Wall clock time and date at job start Tue Mar 31 2020 05:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 120.00157 * 2 1 4 4 C 1.38208 * 120.00085 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00110 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99867 * 359.97438 * 5 4 3 7 7 C 1.38215 * 120.00060 * 179.72688 * 2 1 3 8 8 C 1.50704 * 119.99805 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.46839 * 35.00016 * 8 7 2 10 10 O 1.42902 * 109.46913 * 154.99933 * 8 7 2 11 11 C 1.52995 * 109.47033 * 274.99925 * 8 7 2 12 12 N 1.46501 * 109.46972 * 180.02562 * 11 8 7 13 13 S 1.65602 * 119.99959 * 164.99713 * 12 11 8 14 14 O 1.42099 * 106.40289 * 178.53776 * 13 12 11 15 15 O 1.42097 * 106.40570 * 311.46170 * 13 12 11 16 16 C 1.76206 * 107.21478 * 65.00194 * 13 12 11 17 17 C 1.38632 * 119.74869 * 269.72555 * 16 13 12 18 18 C 1.37617 * 120.24994 * 179.72419 * 17 16 13 19 19 C 1.40717 * 119.74352 * 0.56972 * 18 17 16 20 20 C 1.41394 * 120.24867 * 179.68400 * 19 18 17 21 21 H 1.08000 * 120.00175 * 204.40801 * 20 19 18 22 22 C 1.39948 * 119.99774 * 24.40580 * 20 19 18 23 23 N 1.30827 * 119.99867 * 17.84505 * 22 20 19 24 24 Si 1.86796 * 119.99879 * 197.85027 * 22 20 19 25 25 H 1.48493 * 109.47511 * 60.00143 * 24 22 20 26 26 H 1.48502 * 109.46819 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47380 * 299.99742 * 24 22 20 28 28 C 1.40720 * 119.51152 * 359.70323 * 19 18 17 29 29 C 1.37618 * 119.74203 * 0.02562 * 28 19 18 30 30 H 1.08996 * 109.47447 * 89.99950 * 1 2 3 31 31 H 1.08998 * 109.47301 * 330.00022 * 1 2 3 32 32 H 1.09001 * 109.47042 * 209.99896 * 1 2 3 33 33 H 1.08001 * 120.00016 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.00122 * 180.02562 * 4 3 2 35 35 H 1.07998 * 120.00332 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.00227 * 180.02562 * 6 5 4 37 37 H 0.96695 * 114.00120 * 60.00074 * 10 8 7 38 38 H 1.09002 * 109.47383 * 299.99758 * 11 8 7 39 39 H 1.09002 * 109.47310 * 59.99834 * 11 8 7 40 40 H 0.96999 * 120.00080 * 344.99844 * 12 11 8 41 41 H 1.08001 * 119.87699 * 359.97438 * 17 16 13 42 42 H 1.07995 * 120.13373 * 180.27772 * 18 17 16 43 43 H 0.96999 * 119.99276 * 179.97438 * 23 22 20 44 44 H 1.07999 * 120.13034 * 179.97438 * 28 19 18 45 45 H 1.08001 * 119.87648 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0057 8 6 1.4445 -2.5020 0.0125 9 1 0.5336 -2.3987 -0.5771 10 8 2.2636 -3.5279 -0.5521 11 6 1.0812 -2.8737 1.4515 12 7 0.3492 -4.1427 1.4581 13 16 0.1517 -4.9772 2.8748 14 8 -0.6182 -6.1288 2.5582 15 8 1.4338 -5.0428 3.4841 16 6 -0.8504 -3.9835 3.9300 17 6 -0.2531 -3.0767 4.7919 18 6 -1.0261 -2.2915 5.6164 19 6 -2.4271 -2.4203 5.5909 20 6 -3.2312 -1.6236 6.4383 21 1 -4.2175 -1.9610 6.7207 22 6 -2.7489 -0.3979 6.9111 23 7 -1.7348 0.1785 6.3186 24 14 -3.5529 0.4150 8.3883 25 1 -3.4547 -0.4867 9.5640 26 1 -2.8613 1.6949 8.6863 27 1 -4.9823 0.6836 8.0884 28 6 -3.0221 -3.3481 4.7161 29 6 -2.2297 -4.1189 3.8965 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5138 33 1 1.6583 2.1326 0.0004 34 1 4.1204 2.1326 0.0010 35 1 5.3516 -0.0001 0.0014 36 1 4.1206 -2.1323 0.0010 37 1 3.0930 -3.6749 -0.0773 38 1 1.9921 -2.9770 2.0411 39 1 0.4565 -2.0911 1.8822 40 1 -0.0197 -4.4941 0.6328 41 1 0.8226 -2.9832 4.8135 42 1 -0.5591 -1.5825 6.2839 43 1 -1.4008 1.0282 6.6462 44 1 -4.0964 -3.4555 4.6886 45 1 -2.6840 -4.8320 3.2245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:19 Heat of formation + Delta-G solvation = -96.638985 kcal Electronic energy + Delta-G solvation = -29918.447441 eV Core-core repulsion = 25798.666392 eV Total energy + Delta-G solvation = -4119.781049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.08807 -37.60378 -37.38979 -36.47220 -35.13288 -34.33673 -34.05809 -33.04456 -31.35584 -30.28272 -29.49069 -27.88578 -26.86053 -25.84240 -23.55196 -21.83395 -21.53882 -21.15595 -20.98809 -18.88855 -17.66044 -17.62965 -17.20829 -16.66399 -16.27468 -15.94232 -15.54646 -15.22736 -14.97402 -14.50765 -14.29006 -14.15138 -13.85641 -13.69510 -13.40304 -13.23349 -13.21155 -12.74072 -12.43206 -12.33176 -12.24204 -12.18696 -11.85177 -11.81076 -11.56224 -11.46988 -11.37010 -11.29666 -11.24296 -11.19381 -11.03259 -10.91863 -10.45338 -10.23697 -9.79428 -9.67600 -9.52636 -9.08106 -8.92344 -8.68870 -7.98908 -7.73035 -7.17501 -4.83077 1.12315 1.26237 1.30582 2.23128 2.85794 2.87218 2.89690 2.92923 3.55596 3.63819 3.72215 4.20469 4.27490 4.50283 4.53043 4.68291 4.74481 4.86837 4.91510 5.05099 5.19873 5.21552 5.35901 5.39718 5.52653 5.56528 5.64993 5.73002 5.79658 5.93264 6.03254 6.07768 6.10606 6.13644 6.34422 6.37529 6.48929 6.65286 6.68255 6.86251 6.88933 7.02344 7.27966 7.32174 7.40202 7.46875 7.61025 7.74311 7.94222 8.28960 8.48540 8.62313 9.73786 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008433 B = 0.003523 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.563270 B = 7946.954287 C =10383.888120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.106 4.106 7 C -0.118 4.118 8 C 0.144 3.856 9 H 0.116 0.884 10 O -0.551 6.551 11 C 0.094 3.906 12 N -1.120 6.120 13 S 2.695 3.305 14 O -0.985 6.985 15 O -0.985 6.985 16 C -0.788 4.788 17 C -0.017 4.017 18 C -0.182 4.182 19 C 0.140 3.860 20 C -0.435 4.435 21 H 0.087 0.913 22 C 0.073 3.927 23 N -0.766 5.766 24 Si 0.917 3.083 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.261 1.261 28 C -0.239 4.239 29 C 0.003 3.997 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.375 0.625 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.412 0.588 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 4.539 -10.717 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.068 4.068 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.124 4.124 7 C -0.119 4.119 8 C 0.083 3.917 9 H 0.134 0.866 10 O -0.357 6.357 11 C -0.033 4.033 12 N -0.877 5.877 13 S 2.794 3.206 14 O -0.976 6.976 15 O -0.976 6.976 16 C -0.884 4.884 17 C -0.038 4.038 18 C -0.202 4.202 19 C 0.136 3.864 20 C -0.463 4.463 21 H 0.105 0.895 22 C -0.149 4.149 23 N -0.388 5.388 24 Si 0.740 3.260 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.185 1.185 28 C -0.260 4.260 29 C -0.017 4.017 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.224 0.776 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.246 0.754 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.389 3.947 -10.826 13.689 hybrid contribution -0.393 1.206 0.925 1.570 sum 6.996 5.153 -9.901 13.174 Atomic orbital electron populations 1.20978 0.90847 1.04105 1.02536 1.19758 0.96265 0.92373 0.98431 1.21055 0.94287 0.97527 1.00809 1.21155 0.94345 0.98070 0.99839 1.21071 0.99817 0.92407 1.01010 1.20865 0.93388 0.98370 0.99789 1.20301 0.94339 0.95076 1.02220 1.21005 0.93416 0.83521 0.93736 0.86615 1.86600 1.35392 1.56589 1.57078 1.21870 0.97479 0.86522 0.97424 1.55616 1.70575 1.35070 1.26436 1.01182 0.73667 0.73356 0.72439 1.93492 1.72268 1.47481 1.84341 1.93474 1.41131 1.86756 1.76201 1.29160 1.06941 1.26918 1.25415 1.20254 0.97540 0.92349 0.93623 1.21329 0.93671 1.02211 1.03018 1.17843 0.92421 0.88593 0.87507 1.19924 1.02221 1.01334 1.22792 0.89468 1.26123 0.94347 0.97258 0.97171 1.69807 1.19866 1.14667 1.34451 0.86204 0.80239 0.78552 0.81028 1.18328 1.19885 1.18548 1.21053 0.97766 1.04498 1.02674 1.20164 0.91527 0.94405 0.95626 0.90908 0.90856 0.90576 0.85896 0.86120 0.86052 0.85963 0.77600 0.90100 0.90106 0.75413 0.88005 0.86004 0.89943 0.88205 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.23 36.00 0.33 -1.01 16 2 C -0.07 -0.78 5.88 -104.63 -0.62 -1.39 16 3 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 4 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 5 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 6 C -0.11 -1.11 9.30 -39.59 -0.37 -1.48 16 7 C -0.12 -1.36 5.07 -104.62 -0.53 -1.89 16 8 C 0.14 1.65 2.60 -27.88 -0.07 1.58 16 9 H 0.12 1.26 6.98 -51.93 -0.36 0.89 16 10 O -0.55 -6.27 12.85 -35.23 -0.45 -6.72 16 11 C 0.09 1.28 5.68 -4.04 -0.02 1.26 16 12 N -1.12 -16.52 5.86 -10.61 -0.06 -16.59 16 13 S 2.69 51.23 5.73 -107.50 -0.62 50.61 16 14 O -0.99 -20.77 17.26 -57.17 -0.99 -21.75 16 15 O -0.99 -20.76 16.72 -57.17 -0.96 -21.71 16 16 C -0.79 -17.02 5.97 -39.29 -0.23 -17.26 16 17 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 18 C -0.18 -4.46 8.70 -38.87 -0.34 -4.80 16 19 C 0.14 3.48 5.58 -106.82 -0.60 2.89 16 20 C -0.44 -10.50 9.05 -37.74 -0.34 -10.84 16 21 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 22 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 23 N -0.77 -17.72 10.95 55.55 0.61 -17.11 16 24 Si 0.92 16.74 29.59 -169.99 -5.03 11.71 16 25 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 26 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 27 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 28 C -0.24 -5.57 9.80 -38.87 -0.38 -5.95 16 29 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.08 0.85 5.42 -51.93 -0.28 0.57 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.03 6.40 -52.48 -0.34 0.69 16 37 H 0.38 3.32 7.33 45.56 0.33 3.65 16 38 H 0.08 1.12 7.75 -51.93 -0.40 0.72 16 39 H 0.08 1.15 6.92 -51.93 -0.36 0.79 16 40 H 0.41 5.29 8.65 -34.47 -0.30 4.99 16 41 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 42 H 0.12 3.03 6.15 -52.49 -0.32 2.70 16 43 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 44 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.10 2.07 7.60 -52.49 -0.40 1.68 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -30.67 386.51 -11.77 -42.44 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -4.91 Total: 16.54 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: -5.19 Total: -43.23 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.55 Total: -33.70 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -2.40 Total: -50.19 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 16 Polarization: 51.23 SS G_CDS: -0.62 Total: 50.61 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.67 -11.77 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.200 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds