Wall clock time and date at job start Tue Mar 31 2020 05:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35917 * 116.99932 * 2 1 4 4 C 1.38752 * 120.04246 * 0.27860 * 3 2 1 5 5 C 1.38119 * 119.95373 * 180.27070 * 4 3 2 6 6 C 1.38389 * 120.04744 * 359.72414 * 5 4 3 7 7 Cl 1.73604 * 119.95625 * 180.02562 * 6 5 4 8 8 C 1.38343 * 120.08336 * 359.97438 * 6 5 4 9 9 C 1.38167 * 120.04096 * 0.04017 * 8 6 5 10 10 C 1.50701 * 120.01857 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47117 * 216.19844 * 10 9 8 12 12 C 1.53001 * 109.47151 * 96.19857 * 10 9 8 13 13 C 1.53000 * 109.47274 * 175.56825 * 12 10 9 14 14 C 1.52998 * 109.47086 * 173.80436 * 13 12 10 15 15 C 1.53004 * 109.47126 * 293.80654 * 13 12 10 16 16 N 1.46500 * 109.47411 * 336.19884 * 10 9 8 17 17 S 1.65597 * 120.00207 * 263.43276 * 16 10 9 18 18 O 1.42102 * 106.40482 * 179.32898 * 17 16 10 19 19 O 1.42104 * 106.40121 * 312.24944 * 17 16 10 20 20 C 1.76205 * 107.21967 * 65.78698 * 17 16 10 21 21 H 1.07999 * 119.99811 * 0.02562 * 20 17 16 22 22 C 1.37878 * 120.00145 * 180.02562 * 20 17 16 23 23 N 1.31517 * 119.99790 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 119.99879 * 180.02562 * 22 20 17 25 25 H 1.48508 * 109.47279 * 90.00095 * 24 22 20 26 26 H 1.48503 * 109.47282 * 209.99648 * 24 22 20 27 27 H 1.48497 * 109.47457 * 329.99585 * 24 22 20 28 28 H 1.09001 * 109.47204 * 60.00115 * 1 2 3 29 29 H 1.09006 * 109.46579 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47214 * 299.99404 * 1 2 3 31 31 H 1.07996 * 120.01682 * 359.97438 * 4 3 2 32 32 H 1.08008 * 119.97594 * 179.75028 * 5 4 3 33 33 H 1.07996 * 119.97503 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.46793 * 55.56568 * 12 10 9 35 35 H 1.08999 * 109.46973 * 295.56771 * 12 10 9 36 36 H 1.09003 * 109.46797 * 53.80625 * 13 12 10 37 37 H 1.08994 * 109.47308 * 60.00282 * 14 13 12 38 38 H 1.08997 * 109.47075 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47019 * 299.99766 * 14 13 12 40 40 H 1.08997 * 109.46977 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.46588 * 299.99575 * 15 13 12 42 42 H 1.08995 * 109.46858 * 59.99760 * 15 13 12 43 43 H 0.96999 * 120.00136 * 83.42674 * 16 10 9 44 44 H 0.97002 * 119.99629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2912 2.3753 0.0058 5 6 1.9201 3.6049 0.0002 6 6 3.3021 3.6764 -0.0055 7 17 4.0901 5.2233 -0.0120 8 6 4.0565 2.5167 -0.0051 9 6 3.4310 1.2848 0.0003 10 6 4.2533 0.0218 0.0002 11 1 3.7542 -0.7366 -0.6030 12 6 4.4065 -0.4871 1.4349 13 6 5.1460 -1.8265 1.4248 14 6 5.4356 -2.2600 2.8632 15 6 4.2779 -2.8832 0.7385 16 7 5.5767 0.3007 -0.5629 17 16 5.8804 -0.0154 -2.1598 18 8 7.2268 0.3726 -2.3967 19 8 5.3944 -1.3273 -2.4087 20 6 4.8738 1.0763 -3.1083 21 1 4.2204 1.7777 -2.6107 22 6 4.9203 1.0352 -4.4857 23 7 5.7163 0.1815 -5.0915 24 14 3.8536 2.1931 -5.4911 25 1 4.5980 3.4516 -5.7513 26 1 3.5044 1.5486 -6.7826 27 1 2.6105 2.4998 -4.7389 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.2126 2.3198 0.0100 32 1 1.3328 4.5114 0.0006 33 1 5.1349 2.5746 -0.0091 34 1 3.4206 -0.6197 1.8806 35 1 4.9746 0.2372 2.0186 36 1 6.0849 -1.7189 0.8817 37 1 4.4967 -2.3676 3.4063 38 1 5.9628 -3.2140 2.8560 39 1 6.0541 -1.5072 3.3521 40 1 4.8050 -3.8372 0.7309 41 1 3.3391 -2.9906 1.2817 42 1 4.0717 -2.5742 -0.2862 43 1 6.2750 0.6705 -0.0004 44 1 5.7493 0.1529 -6.0606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:57 Heat of formation + Delta-G solvation = -153.082270 kcal Electronic energy + Delta-G solvation = -29957.340178 eV Core-core repulsion = 25832.678715 eV Total energy + Delta-G solvation = -4124.661463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.095 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.41497 -38.95255 -38.28744 -37.32681 -37.01029 -36.10548 -35.25839 -35.08541 -31.96895 -30.98437 -29.03721 -28.22030 -28.01894 -27.90855 -25.00351 -23.11272 -22.16206 -21.02033 -20.77748 -19.47516 -19.01275 -18.27271 -17.47814 -17.43346 -17.01822 -16.60857 -16.29672 -15.96143 -15.82925 -15.59001 -15.34407 -15.10330 -14.74418 -14.54832 -14.20901 -13.99707 -13.68651 -13.52066 -13.26389 -13.07362 -13.03914 -12.96703 -12.80010 -12.77848 -12.50120 -12.47343 -12.34447 -12.31812 -12.28637 -12.13425 -11.83108 -11.65897 -11.51932 -11.46005 -11.40847 -11.24607 -10.95778 -10.28868 -9.85846 -9.01105 -8.73866 -7.42815 0.22549 0.27337 0.39912 1.24019 1.29396 1.30561 1.45321 2.19241 2.40107 2.59652 2.60132 3.00319 3.53323 3.75210 3.85759 3.98210 4.04240 4.09794 4.19483 4.27604 4.39293 4.45144 4.48637 4.52082 4.55267 4.60913 4.79834 4.83016 4.84864 4.90845 4.94386 4.96051 5.06407 5.11174 5.18655 5.21240 5.25226 5.30923 5.39265 5.43514 5.58049 5.62168 5.67764 5.96073 6.39730 6.43166 6.82503 8.22856 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.006789 B = 0.006267 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4123.128300 B = 4466.807412 C = 6249.422421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.133 3.867 4 C -0.193 4.193 5 C -0.072 4.072 6 C -0.084 4.084 7 Cl -0.076 7.076 8 C -0.066 4.066 9 C -0.129 4.129 10 C 0.205 3.795 11 H 0.085 0.915 12 C -0.098 4.098 13 C -0.102 4.102 14 C -0.137 4.137 15 C -0.151 4.151 16 N -1.112 6.112 17 S 2.719 3.281 18 O -1.048 7.048 19 O -1.036 7.036 20 C -1.026 5.026 21 H 0.117 0.883 22 C 0.077 3.923 23 N -0.895 5.895 24 Si 0.974 3.026 25 H -0.256 1.256 26 H -0.261 1.261 27 H -0.250 1.250 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.415 0.585 44 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 3.940 15.723 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.087 3.913 4 C -0.212 4.212 5 C -0.091 4.091 6 C -0.111 4.111 7 Cl -0.048 7.048 8 C -0.085 4.085 9 C -0.132 4.132 10 C 0.097 3.903 11 H 0.103 0.897 12 C -0.137 4.137 13 C -0.121 4.121 14 C -0.194 4.194 15 C -0.209 4.209 16 N -0.870 5.870 17 S 2.819 3.181 18 O -1.038 7.038 19 O -1.026 7.026 20 C -1.160 5.160 21 H 0.135 0.865 22 C -0.135 4.135 23 N -0.527 5.527 24 Si 0.793 3.207 25 H -0.180 1.180 26 H -0.185 1.185 27 H -0.173 1.173 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.177 0.823 33 H 0.152 0.848 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.225 3.010 15.161 19.708 hybrid contribution -0.149 1.233 -0.943 1.560 sum -12.374 4.243 14.218 19.320 Atomic orbital electron populations 1.23427 0.76291 1.05734 1.02578 1.86120 1.23594 1.26115 1.88030 1.18966 0.91272 0.85601 0.95494 1.21434 1.01622 0.90491 1.07610 1.21085 0.91721 0.99158 0.97104 1.20870 0.93596 0.86332 1.10261 1.98342 1.81020 1.28125 1.97269 1.20753 1.00766 0.89873 0.97139 1.19702 0.91600 0.95783 1.06080 1.19512 0.80764 0.92590 0.97423 0.89698 1.21828 1.02223 0.96706 0.92909 1.21135 0.98566 0.94725 0.97660 1.21770 1.02127 1.01295 0.94248 1.21897 1.00301 0.98485 1.00181 1.55471 1.20091 1.82338 1.29077 0.99932 0.72906 0.74003 0.71211 1.93311 1.40365 1.85171 1.84973 1.93310 1.82462 1.42159 1.84643 1.30855 1.42610 1.38643 1.03847 0.86539 1.25831 0.94049 0.95099 0.98553 1.69992 1.35196 1.34222 1.13249 0.85352 0.79206 0.78471 0.77655 1.18002 1.18519 1.17280 0.92094 0.86557 0.90306 0.81365 0.82346 0.84784 0.89198 0.89941 0.93012 0.91446 0.92583 0.91965 0.92889 0.91006 0.94550 0.75067 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.58 9.65 -92.62 -0.89 -9.48 16 3 C 0.13 3.78 6.66 22.50 0.15 3.93 16 4 C -0.19 -4.37 9.04 22.36 0.20 -4.17 16 5 C -0.07 -1.70 9.82 22.28 0.22 -1.48 16 6 C -0.08 -2.40 6.32 22.33 0.14 -2.26 16 7 Cl -0.08 -2.06 28.95 -2.72 -0.08 -2.14 16 8 C -0.07 -2.12 8.37 22.28 0.19 -1.94 16 9 C -0.13 -4.18 4.62 -19.77 -0.09 -4.27 16 10 C 0.20 7.10 2.11 44.25 0.09 7.19 16 11 H 0.09 3.44 5.32 -2.39 -0.01 3.42 16 12 C -0.10 -2.58 4.26 30.59 0.13 -2.45 16 13 C -0.10 -2.79 2.86 -10.79 -0.03 -2.83 16 14 C -0.14 -2.77 9.19 71.98 0.66 -2.11 16 15 C -0.15 -4.46 8.97 71.98 0.65 -3.82 16 16 N -1.11 -44.15 3.63 -172.52 -0.63 -44.78 16 17 S 2.72 148.06 5.00 -56.49 -0.28 147.77 16 18 O -1.05 -63.93 18.02 -128.00 -2.31 -66.23 16 19 O -1.04 -62.11 17.33 -128.00 -2.22 -64.33 16 20 C -1.03 -57.16 9.73 67.73 0.66 -56.50 16 21 H 0.12 6.00 6.58 -2.91 -0.02 5.98 16 22 C 0.08 4.39 5.46 84.65 0.46 4.85 16 23 N -0.89 -54.32 13.19 21.45 0.28 -54.04 16 24 Si 0.97 42.57 29.54 68.60 2.03 44.59 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 28 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 29 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.08 0.85 7.65 -2.39 -0.02 0.83 16 31 H 0.17 2.54 6.30 -2.91 -0.02 2.52 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.13 4.34 7.05 -2.91 -0.02 4.32 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.65 7.57 -2.39 -0.02 1.63 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.33 6.51 -2.39 -0.02 1.32 16 43 H 0.41 14.04 8.57 -96.75 -0.83 13.21 16 44 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -79.02 388.60 0.65 -78.38 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.20 Total: 34.77 kcal Atomic # 6 Polarization: -69.05 SS G_CDS: 4.54 Total: -64.51 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -0.34 Total: -98.82 kcal Atomic # 8 Polarization: -134.62 SS G_CDS: -5.42 Total: -140.04 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 148.06 SS G_CDS: -0.28 Total: 147.77 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -79.02 0.65 -78.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.706 kcal (2) G-P(sol) polarization free energy of solvation -79.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds