Wall clock time and date at job start Tue Mar 31 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35922 * 116.99587 * 2 1 4 4 C 1.38739 * 120.04262 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.95514 * 180.02562 * 4 3 2 6 6 C 1.38389 * 120.04023 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 119.95304 * 180.02562 * 6 5 4 8 8 C 1.38340 * 120.08833 * 359.79103 * 6 5 4 9 9 C 1.38166 * 120.04244 * 0.46546 * 8 6 5 10 10 C 1.50693 * 120.02343 * 179.79049 * 9 8 6 11 11 H 1.09001 * 109.47523 * 144.71888 * 10 9 8 12 12 C 1.53002 * 109.47517 * 264.72191 * 10 9 8 13 13 C 1.53007 * 109.46904 * 293.30909 * 12 10 9 14 14 C 1.52997 * 109.46923 * 293.35859 * 13 12 10 15 15 C 1.53003 * 109.46913 * 173.35715 * 13 12 10 16 16 N 1.46500 * 109.47238 * 24.72134 * 10 9 8 17 17 S 1.65606 * 120.00072 * 141.18091 * 16 10 9 18 18 O 1.42101 * 106.40019 * 179.00919 * 17 16 10 19 19 O 1.42100 * 106.40072 * 311.93116 * 17 16 10 20 20 C 1.76198 * 107.21909 * 65.47274 * 17 16 10 21 21 H 1.08002 * 119.99729 * 5.07625 * 20 17 16 22 22 C 1.37875 * 119.99996 * 185.08212 * 20 17 16 23 23 N 1.31516 * 119.99895 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00012 * 179.97438 * 22 20 17 25 25 H 1.48507 * 109.46969 * 59.99854 * 24 22 20 26 26 H 1.48497 * 109.47333 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47028 * 300.00069 * 24 22 20 28 28 H 1.09004 * 109.46821 * 299.99231 * 1 2 3 29 29 H 1.08997 * 109.47285 * 59.99915 * 1 2 3 30 30 H 1.09008 * 109.46575 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.02612 * 0.04584 * 4 3 2 32 32 H 1.07993 * 119.97878 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.98031 * 180.22704 * 8 6 5 34 34 H 1.09000 * 109.47569 * 173.30656 * 12 10 9 35 35 H 1.09002 * 109.46651 * 53.30468 * 12 10 9 36 36 H 1.09000 * 109.46975 * 53.35450 * 13 12 10 37 37 H 1.09001 * 109.47124 * 173.89273 * 14 13 12 38 38 H 1.09006 * 109.46893 * 293.89010 * 14 13 12 39 39 H 1.09003 * 109.47474 * 53.88972 * 14 13 12 40 40 H 1.08998 * 109.46735 * 179.97438 * 15 13 12 41 41 H 1.08994 * 109.46676 * 299.99748 * 15 13 12 42 42 H 1.08998 * 109.46881 * 59.99665 * 15 13 12 43 43 H 0.96999 * 120.00310 * 321.18077 * 16 10 9 44 44 H 0.97000 * 119.99812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6050 -0.0011 6 6 3.3021 3.6764 -0.0005 7 17 4.0901 5.2233 -0.0005 8 6 4.0565 2.5168 0.0049 9 6 3.4311 1.2848 0.0001 10 6 4.2533 0.0219 0.0012 11 1 3.7461 -0.7414 0.5913 12 6 4.4264 -0.4754 -1.4353 13 6 3.0705 -0.9194 -1.9881 14 6 2.5885 -2.1549 -1.2252 15 6 3.2120 -1.2599 -3.4731 16 7 5.5688 0.2961 0.5848 17 16 6.2857 -0.8227 1.5732 18 8 7.5423 -0.2774 1.9512 19 8 5.2966 -1.2204 2.5128 20 6 6.6350 -2.2412 0.5880 21 1 6.4514 -2.2181 -0.4760 22 6 7.1426 -3.3805 1.1755 23 7 7.3665 -3.4084 2.4712 24 14 7.5123 -4.8846 0.1312 25 1 8.5199 -4.5343 -0.9020 26 1 8.0461 -5.9681 0.9951 27 1 6.2655 -5.3468 -0.5299 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 0.2127 2.3199 -0.0002 32 1 1.3329 4.5114 -0.0011 33 1 5.1349 2.5746 0.0090 34 1 5.1173 -1.3184 -1.4473 35 1 4.8246 0.3296 -2.0529 36 1 2.3473 -0.1129 -1.8675 37 1 1.5768 -2.4066 -1.5434 38 1 3.2539 -2.9928 -1.4333 39 1 2.5915 -1.9455 -0.1555 40 1 2.2462 -1.5765 -3.8668 41 1 3.5553 -0.3796 -4.0165 42 1 3.9353 -2.0663 -3.5936 43 1 6.0199 1.1330 0.3924 44 1 7.7233 -4.2101 2.8846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:02 Heat of formation + Delta-G solvation = -121.560345 kcal Electronic energy + Delta-G solvation = -29840.840595 eV Core-core repulsion = 25717.546025 eV Total energy + Delta-G solvation = -4123.294570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.095 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.65943 -37.85352 -37.14395 -36.09420 -35.15444 -34.09372 -33.90941 -33.03639 -30.79214 -30.10464 -27.82025 -27.31794 -26.78484 -26.08526 -23.83713 -22.28815 -21.23433 -19.56659 -19.01867 -18.20617 -17.42895 -16.65443 -16.45798 -16.12103 -15.88811 -15.09820 -14.79821 -14.67796 -14.57009 -14.08048 -13.95234 -13.75716 -13.53820 -13.46721 -13.22912 -12.61537 -12.49040 -12.02758 -12.00005 -11.93790 -11.78505 -11.69975 -11.49657 -11.37303 -11.18053 -11.06330 -10.81026 -10.78731 -10.72871 -10.60382 -10.30335 -10.26914 -10.24881 -10.11596 -9.94995 -9.20839 -9.13890 -8.87045 -8.53962 -8.08457 -6.66772 -5.28529 1.14881 1.16534 2.13369 2.35742 3.10262 3.14881 3.20027 3.20305 3.52423 4.08037 4.53990 4.60064 4.68020 4.69797 4.93270 5.04852 5.06320 5.16336 5.21713 5.27190 5.31638 5.39494 5.43386 5.56241 5.76646 5.79540 5.88884 5.94141 5.97006 6.04177 6.07250 6.09735 6.17657 6.23810 6.28805 6.41434 6.47869 6.51426 6.61840 6.78313 6.81609 6.93823 7.26529 7.37515 7.89669 8.01329 8.92327 10.27384 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.004232 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.907014 B = 6614.049670 C = 7991.837100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.294 6.294 3 C 0.141 3.859 4 C -0.197 4.197 5 C -0.078 4.078 6 C -0.069 4.069 7 Cl -0.077 7.077 8 C -0.066 4.066 9 C -0.091 4.091 10 C 0.205 3.795 11 H 0.113 0.887 12 C -0.131 4.131 13 C -0.093 4.093 14 C -0.144 4.144 15 C -0.146 4.146 16 N -1.133 6.133 17 S 2.712 3.288 18 O -1.010 7.010 19 O -1.001 7.001 20 C -1.017 5.017 21 H 0.105 0.895 22 C 0.135 3.865 23 N -0.845 5.845 24 Si 0.917 3.083 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.263 1.263 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.399 0.601 44 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 9.243 -9.752 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.207 6.207 3 C 0.095 3.905 4 C -0.216 4.216 5 C -0.097 4.097 6 C -0.096 4.096 7 Cl -0.048 7.048 8 C -0.085 4.085 9 C -0.094 4.094 10 C 0.097 3.903 11 H 0.131 0.869 12 C -0.170 4.170 13 C -0.112 4.112 14 C -0.201 4.201 15 C -0.203 4.203 16 N -0.886 5.886 17 S 2.812 3.188 18 O -1.000 7.000 19 O -0.991 6.991 20 C -1.151 5.151 21 H 0.123 0.877 22 C -0.083 4.083 23 N -0.474 5.474 24 Si 0.741 3.259 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.188 1.188 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.231 0.769 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.291 9.056 -8.582 18.971 hybrid contribution 0.233 -0.368 -1.144 1.224 sum -14.058 8.688 -9.727 19.176 Atomic orbital electron populations 1.23094 0.78838 1.04227 1.01095 1.86356 1.20934 1.25600 1.87789 1.18790 0.91505 0.84767 0.95477 1.21110 1.00161 0.91450 1.08876 1.20734 0.92247 0.97933 0.98777 1.20698 0.92763 0.86497 1.09614 1.98355 1.80798 1.28409 1.97235 1.20701 1.00616 0.89452 0.97721 1.19470 0.90799 0.95764 1.03350 1.19467 0.82493 0.93194 0.95181 0.86890 1.22257 0.97986 1.01985 0.94816 1.21140 0.96949 0.98732 0.94348 1.21866 0.99719 0.97069 1.01422 1.21850 1.01121 1.01170 0.96160 1.56234 1.28319 1.34463 1.69622 1.00518 0.72111 0.73288 0.72916 1.93378 1.43412 1.80626 1.82633 1.93362 1.61769 1.82826 1.61142 1.30567 1.58090 1.17674 1.08746 0.87673 1.24716 0.89732 0.99191 0.94692 1.69900 1.36248 1.31185 1.10108 0.86255 0.79592 0.79794 0.80265 1.18894 1.20222 1.18768 0.92650 0.92739 0.88031 0.84603 0.84991 0.84198 0.89423 0.91921 0.90797 0.93736 0.92914 0.91202 0.93272 0.93274 0.92687 0.76906 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.29 -3.62 5.17 -19.50 -0.10 -3.72 16 3 C 0.14 1.85 5.43 -39.22 -0.21 1.63 16 4 C -0.20 -2.10 9.04 -39.44 -0.36 -2.46 16 5 C -0.08 -0.85 9.82 -39.57 -0.39 -1.24 16 6 C -0.07 -0.87 6.32 -39.49 -0.25 -1.12 16 7 Cl -0.08 -0.90 28.95 -51.86 -1.50 -2.40 16 8 C -0.07 -0.93 9.08 -39.57 -0.36 -1.29 16 9 C -0.09 -1.37 4.83 -104.48 -0.50 -1.88 16 10 C 0.20 3.59 2.37 -69.08 -0.16 3.42 16 11 H 0.11 2.22 5.17 -51.93 -0.27 1.95 16 12 C -0.13 -2.05 4.43 -26.73 -0.12 -2.16 16 13 C -0.09 -1.24 2.36 -90.62 -0.21 -1.45 16 14 C -0.14 -2.02 7.96 37.16 0.30 -1.73 16 15 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 16 N -1.13 -22.46 5.27 -5.88 -0.03 -22.49 16 17 S 2.71 71.49 5.02 -107.50 -0.54 70.95 16 18 O -1.01 -29.63 18.02 -57.17 -1.03 -30.66 16 19 O -1.00 -29.20 17.24 -57.17 -0.99 -30.19 16 20 C -1.02 -27.21 9.63 30.60 0.29 -26.92 16 21 H 0.11 2.53 5.91 -52.49 -0.31 2.22 16 22 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 23 N -0.84 -24.67 13.10 55.43 0.73 -23.95 16 24 Si 0.92 20.29 29.54 -169.99 -5.02 15.27 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 27 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 28 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 31 H 0.14 1.06 6.30 -52.49 -0.33 0.73 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.89 6.09 -52.49 -0.32 1.57 16 34 H 0.09 1.51 6.11 -51.93 -0.32 1.19 16 35 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 36 H 0.07 0.94 4.91 -51.93 -0.26 0.69 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.10 5.10 -51.93 -0.26 0.83 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.40 6.85 6.67 -34.47 -0.23 6.62 16 44 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -34.71 374.31 -9.19 -43.90 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.61 Total: 9.43 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -0.74 Total: -31.78 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.69 Total: -46.43 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -2.12 Total: -64.57 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 71.49 SS G_CDS: -0.54 Total: 70.95 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.71 -9.19 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.660 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds