Wall clock time and date at job start Tue Mar 31 2020 05:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35922 * 116.99587 * 2 1 4 4 C 1.38739 * 120.04262 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.95514 * 180.02562 * 4 3 2 6 6 C 1.38389 * 120.04023 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 119.95304 * 180.02562 * 6 5 4 8 8 C 1.38340 * 120.08833 * 359.79103 * 6 5 4 9 9 C 1.38166 * 120.04244 * 0.46546 * 8 6 5 10 10 C 1.50693 * 120.02343 * 179.79049 * 9 8 6 11 11 H 1.09001 * 109.47523 * 144.71888 * 10 9 8 12 12 C 1.53002 * 109.47517 * 264.72191 * 10 9 8 13 13 C 1.53007 * 109.46904 * 293.30909 * 12 10 9 14 14 C 1.52997 * 109.46923 * 293.35859 * 13 12 10 15 15 C 1.53003 * 109.46913 * 173.35715 * 13 12 10 16 16 N 1.46500 * 109.47238 * 24.72134 * 10 9 8 17 17 S 1.65606 * 120.00072 * 141.18091 * 16 10 9 18 18 O 1.42101 * 106.40019 * 179.00919 * 17 16 10 19 19 O 1.42100 * 106.40072 * 311.93116 * 17 16 10 20 20 C 1.76198 * 107.21909 * 65.47274 * 17 16 10 21 21 H 1.08002 * 119.99729 * 5.07625 * 20 17 16 22 22 C 1.37875 * 119.99996 * 185.08212 * 20 17 16 23 23 N 1.31516 * 119.99895 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00012 * 179.97438 * 22 20 17 25 25 H 1.48507 * 109.46969 * 59.99854 * 24 22 20 26 26 H 1.48497 * 109.47333 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47028 * 300.00069 * 24 22 20 28 28 H 1.09004 * 109.46821 * 299.99231 * 1 2 3 29 29 H 1.08997 * 109.47285 * 59.99915 * 1 2 3 30 30 H 1.09008 * 109.46575 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.02612 * 0.04584 * 4 3 2 32 32 H 1.07993 * 119.97878 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.98031 * 180.22704 * 8 6 5 34 34 H 1.09000 * 109.47569 * 173.30656 * 12 10 9 35 35 H 1.09002 * 109.46651 * 53.30468 * 12 10 9 36 36 H 1.09000 * 109.46975 * 53.35450 * 13 12 10 37 37 H 1.09001 * 109.47124 * 173.89273 * 14 13 12 38 38 H 1.09006 * 109.46893 * 293.89010 * 14 13 12 39 39 H 1.09003 * 109.47474 * 53.88972 * 14 13 12 40 40 H 1.08998 * 109.46735 * 179.97438 * 15 13 12 41 41 H 1.08994 * 109.46676 * 299.99748 * 15 13 12 42 42 H 1.08998 * 109.46881 * 59.99665 * 15 13 12 43 43 H 0.96999 * 120.00310 * 321.18077 * 16 10 9 44 44 H 0.97000 * 119.99812 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6050 -0.0011 6 6 3.3021 3.6764 -0.0005 7 17 4.0901 5.2233 -0.0005 8 6 4.0565 2.5168 0.0049 9 6 3.4311 1.2848 0.0001 10 6 4.2533 0.0219 0.0012 11 1 3.7461 -0.7414 0.5913 12 6 4.4264 -0.4754 -1.4353 13 6 3.0705 -0.9194 -1.9881 14 6 2.5885 -2.1549 -1.2252 15 6 3.2120 -1.2599 -3.4731 16 7 5.5688 0.2961 0.5848 17 16 6.2857 -0.8227 1.5732 18 8 7.5423 -0.2774 1.9512 19 8 5.2966 -1.2204 2.5128 20 6 6.6350 -2.2412 0.5880 21 1 6.4514 -2.2181 -0.4760 22 6 7.1426 -3.3805 1.1755 23 7 7.3665 -3.4084 2.4712 24 14 7.5123 -4.8846 0.1312 25 1 8.5199 -4.5343 -0.9020 26 1 8.0461 -5.9681 0.9951 27 1 6.2655 -5.3468 -0.5299 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 0.2127 2.3199 -0.0002 32 1 1.3329 4.5114 -0.0011 33 1 5.1349 2.5746 0.0090 34 1 5.1173 -1.3184 -1.4473 35 1 4.8246 0.3296 -2.0529 36 1 2.3473 -0.1129 -1.8675 37 1 1.5768 -2.4066 -1.5434 38 1 3.2539 -2.9928 -1.4333 39 1 2.5915 -1.9455 -0.1555 40 1 2.2462 -1.5765 -3.8668 41 1 3.5553 -0.3796 -4.0165 42 1 3.9353 -2.0663 -3.5936 43 1 6.0199 1.1330 0.3924 44 1 7.7233 -4.2101 2.8846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095439711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:01 Heat of formation + Delta-G solvation = -145.862274 kcal Electronic energy + Delta-G solvation = -29841.894406 eV Core-core repulsion = 25717.546025 eV Total energy + Delta-G solvation = -4124.348381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.095 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.62792 -38.80986 -38.27207 -37.36950 -37.03434 -36.14457 -35.43361 -35.06601 -31.95057 -31.03569 -29.03548 -28.21040 -28.02850 -27.83230 -24.94967 -23.23723 -22.37169 -21.10518 -20.53193 -19.57568 -18.98191 -18.30146 -17.63943 -17.37155 -16.98018 -16.75640 -16.32510 -15.95847 -15.71483 -15.53546 -15.40495 -14.90822 -14.81279 -14.59391 -14.33598 -13.99971 -13.66667 -13.48496 -13.27008 -13.07937 -12.97346 -12.84342 -12.73839 -12.69377 -12.61028 -12.51072 -12.44034 -12.35805 -12.29374 -12.07400 -11.82862 -11.69946 -11.55703 -11.35266 -11.21071 -11.13788 -10.92592 -10.30253 -9.93331 -9.03683 -8.72676 -7.44746 0.16770 0.21146 0.37156 1.19674 1.35171 1.37415 1.49801 2.22111 2.40140 2.55781 2.61227 2.93802 3.51896 3.67723 3.80240 4.04621 4.08283 4.13440 4.16797 4.21837 4.32565 4.46687 4.49377 4.52639 4.54524 4.67390 4.76965 4.81881 4.86056 4.91177 4.96841 5.00166 5.10495 5.14762 5.19135 5.21879 5.26698 5.33021 5.42711 5.44408 5.59991 5.66183 5.73189 5.97953 6.31604 6.44230 6.81540 8.23932 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.004232 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.907014 B = 6614.049670 C = 7991.837100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.137 3.863 4 C -0.186 4.186 5 C -0.068 4.068 6 C -0.079 4.079 7 Cl -0.073 7.073 8 C -0.080 4.080 9 C -0.118 4.118 10 C 0.204 3.796 11 H 0.086 0.914 12 C -0.129 4.129 13 C -0.086 4.086 14 C -0.142 4.142 15 C -0.142 4.142 16 N -1.119 6.119 17 S 2.715 3.285 18 O -1.050 7.050 19 O -1.039 7.039 20 C -1.030 5.030 21 H 0.126 0.874 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.985 3.015 25 H -0.251 1.251 26 H -0.266 1.266 27 H -0.247 1.247 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.411 0.589 44 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.990 9.638 -12.219 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.228 6.228 3 C 0.091 3.909 4 C -0.205 4.205 5 C -0.086 4.086 6 C -0.106 4.106 7 Cl -0.044 7.044 8 C -0.099 4.099 9 C -0.120 4.120 10 C 0.097 3.903 11 H 0.104 0.896 12 C -0.169 4.169 13 C -0.105 4.105 14 C -0.199 4.199 15 C -0.200 4.200 16 N -0.877 5.877 17 S 2.817 3.183 18 O -1.040 7.040 19 O -1.029 7.029 20 C -1.164 5.164 21 H 0.144 0.856 22 C -0.140 4.140 23 N -0.526 5.526 24 Si 0.803 3.197 25 H -0.175 1.175 26 H -0.190 1.190 27 H -0.170 1.170 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.189 0.811 32 H 0.179 0.821 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.246 0.754 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.705 9.481 -11.044 22.157 hybrid contribution 0.863 -0.386 -0.354 1.009 sum -15.842 9.094 -11.398 21.531 Atomic orbital electron populations 1.23426 0.76595 1.05615 1.02710 1.86342 1.23320 1.25517 1.87586 1.18888 0.90943 0.85977 0.95120 1.21463 1.01734 0.90242 1.07055 1.21121 0.91601 0.99238 0.96681 1.20797 0.93584 0.86161 1.10045 1.98355 1.80949 1.27846 1.97239 1.20697 1.00591 0.89979 0.98604 1.19270 0.91757 0.94601 1.06410 1.19527 0.81000 0.94326 0.95464 0.89629 1.22234 0.99186 1.01445 0.93985 1.21105 0.95573 0.98586 0.95236 1.21843 1.00905 0.96928 1.00240 1.21820 1.02029 1.01341 0.94766 1.55610 1.29424 1.33761 1.68953 1.00013 0.71215 0.73810 0.73296 1.93311 1.45411 1.81375 1.83924 1.93304 1.62507 1.83787 1.63287 1.30859 1.57864 1.17858 1.09812 0.85649 1.25968 0.89070 1.02982 0.95961 1.70006 1.37657 1.32665 1.12278 0.85231 0.80336 0.75450 0.78637 1.17519 1.19011 1.17009 0.91634 0.90378 0.86985 0.81077 0.82058 0.84861 0.91673 0.90650 0.89663 0.91224 0.94404 0.93438 0.91423 0.92412 0.93446 0.75411 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -7.28 5.17 -92.67 -0.48 -7.76 16 3 C 0.14 3.38 5.43 22.50 0.12 3.50 16 4 C -0.19 -3.36 9.04 22.36 0.20 -3.15 16 5 C -0.07 -1.26 9.82 22.28 0.22 -1.04 16 6 C -0.08 -1.86 6.32 22.33 0.14 -1.72 16 7 Cl -0.07 -1.61 28.95 -2.72 -0.08 -1.68 16 8 C -0.08 -2.22 9.08 22.28 0.20 -2.02 16 9 C -0.12 -3.53 4.83 -19.77 -0.10 -3.62 16 10 C 0.20 7.35 2.37 44.24 0.10 7.45 16 11 H 0.09 3.55 5.17 -2.39 -0.01 3.54 16 12 C -0.13 -4.05 4.43 30.60 0.14 -3.91 16 13 C -0.09 -2.20 2.36 -10.79 -0.03 -2.22 16 14 C -0.14 -3.92 7.96 71.98 0.57 -3.35 16 15 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 16 N -1.12 -46.36 5.27 -172.53 -0.91 -47.27 16 17 S 2.72 150.03 5.02 -56.49 -0.28 149.74 16 18 O -1.05 -64.58 18.02 -128.00 -2.31 -66.89 16 19 O -1.04 -63.95 17.24 -128.00 -2.21 -66.16 16 20 C -1.03 -56.58 9.63 67.73 0.65 -55.93 16 21 H 0.13 6.14 5.91 -2.91 -0.02 6.12 16 22 C 0.07 4.07 5.46 84.65 0.46 4.54 16 23 N -0.89 -53.92 13.10 21.45 0.28 -53.64 16 24 Si 0.99 41.31 29.54 68.60 2.03 43.34 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 27 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 28 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 29 H 0.08 0.65 7.66 -2.39 -0.02 0.64 16 30 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.17 1.82 6.30 -2.92 -0.02 1.80 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.13 3.71 6.09 -2.91 -0.02 3.69 16 34 H 0.06 2.29 6.11 -2.39 -0.01 2.28 16 35 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16 36 H 0.09 2.01 4.91 -2.39 -0.01 2.00 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 1.53 5.10 -2.39 -0.01 1.52 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.41 14.84 6.67 -96.75 -0.65 14.19 16 44 H 0.30 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -78.70 374.31 0.92 -77.78 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.40 Total: 35.12 kcal Atomic # 6 Polarization: -67.05 SS G_CDS: 4.47 Total: -62.59 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -0.63 Total: -100.91 kcal Atomic # 8 Polarization: -135.81 SS G_CDS: -4.99 Total: -140.81 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 150.03 SS G_CDS: -0.28 Total: 149.74 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.68 kcal Total: -78.70 0.92 -77.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.079 kcal (2) G-P(sol) polarization free energy of solvation -78.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds