Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47398 * 2 1 4 4 H 1.08997 * 109.47317 * 54.99337 * 3 2 1 5 5 C 1.53000 * 109.46670 * 294.99529 * 3 2 1 6 6 C 1.53001 * 109.47109 * 174.99913 * 3 2 1 7 7 H 1.09008 * 109.47087 * 179.97438 * 6 3 2 8 8 N 1.46496 * 109.47239 * 59.99716 * 6 3 2 9 9 C 1.34778 * 120.00349 * 85.00181 * 8 6 3 10 10 O 1.21551 * 119.99688 * 359.97438 * 9 8 6 11 11 C 1.47881 * 120.00246 * 179.97438 * 9 8 6 12 12 C 1.39918 * 120.02560 * 359.73251 * 11 9 8 13 13 C 1.38331 * 120.35951 * 179.71694 * 12 11 9 14 14 C 1.37758 * 120.40735 * 0.55099 * 13 12 11 15 15 C 1.40745 * 120.04342 * 359.72243 * 14 13 12 16 16 C 1.41437 * 120.18148 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99527 * 24.43370 * 16 15 14 18 18 C 1.39936 * 120.00258 * 204.43668 * 16 15 14 19 19 N 1.30826 * 120.00152 * 17.88632 * 18 16 15 20 20 Si 1.86799 * 119.99644 * 197.89365 * 18 16 15 21 21 H 1.48497 * 109.47344 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47442 * 120.00003 * 20 18 16 23 23 H 1.48504 * 109.46656 * 239.99605 * 20 18 16 24 24 C 1.38999 * 120.02464 * 179.97438 * 11 9 8 25 25 C 1.50696 * 109.47081 * 299.99158 * 6 3 2 26 26 O 1.20832 * 119.99932 * 120.00005 * 25 6 3 27 27 O 1.34222 * 120.00384 * 300.00504 * 25 6 3 28 28 C 1.45202 * 117.00372 * 179.97438 * 27 25 6 29 29 C 1.52998 * 109.47130 * 59.99518 * 28 27 25 30 30 C 1.52998 * 109.47257 * 180.02562 * 28 27 25 31 31 C 1.53003 * 109.47028 * 299.99854 * 28 27 25 32 32 H 1.09001 * 109.46467 * 60.00387 * 1 2 3 33 33 H 1.08998 * 109.46886 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47489 * 300.00809 * 1 2 3 35 35 H 1.08995 * 109.47489 * 239.99191 * 2 1 3 36 36 H 1.09005 * 109.46919 * 119.99816 * 2 1 3 37 37 H 1.09008 * 109.47015 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.47698 * 60.00290 * 5 3 2 39 39 H 1.09004 * 109.47457 * 300.00035 * 5 3 2 40 40 H 0.96997 * 120.00013 * 264.99720 * 8 6 3 41 41 H 1.08001 * 119.81714 * 359.96715 * 12 11 9 42 42 H 1.07995 * 119.79371 * 180.24938 * 13 12 11 43 43 H 1.07997 * 119.97428 * 179.74555 * 14 13 12 44 44 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.20127 * 359.97438 * 24 11 9 46 46 H 1.09007 * 109.46566 * 60.00303 * 29 28 27 47 47 H 1.08994 * 109.47457 * 179.97438 * 29 28 27 48 48 H 1.08996 * 109.47667 * 300.00661 * 29 28 27 49 49 H 1.08998 * 109.47388 * 59.99991 * 30 28 27 50 50 H 1.09007 * 109.47159 * 179.97438 * 30 28 27 51 51 H 1.08998 * 109.47025 * 299.99195 * 30 28 27 52 52 H 1.09006 * 109.47038 * 59.99694 * 31 28 27 53 53 H 1.08998 * 109.47310 * 179.97438 * 31 28 27 54 54 H 1.09000 * 109.47406 * 300.00425 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.9284 2.4719 0.1253 8 7 4.1490 0.7197 -1.0056 9 6 4.3737 1.3580 -2.1712 10 8 4.0911 2.5349 -2.2838 11 6 4.9638 0.6267 -3.3130 12 6 5.2945 -0.7265 -3.1822 13 6 5.8415 -1.4188 -4.2476 14 6 6.0775 -0.7814 -5.4458 15 6 5.7567 0.5809 -5.5945 16 6 5.9973 1.2381 -6.8236 17 1 6.0434 0.6689 -7.7402 18 6 6.1756 2.6258 -6.8520 19 7 6.4690 3.2702 -5.7519 20 14 5.9945 3.5579 -8.4606 21 1 5.6628 2.6052 -9.5502 22 1 4.9074 4.5612 -8.3317 23 1 7.2702 4.2485 -8.7787 24 6 5.1952 1.2845 -4.5155 25 6 3.9635 0.7706 1.4135 26 8 4.6637 -0.2138 1.3888 27 8 3.5407 1.2641 2.5879 28 6 3.9630 0.5638 3.7877 29 6 5.4909 0.5646 3.8676 30 6 3.3870 1.2672 5.0183 31 6 3.4555 -0.8789 3.7415 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.9992 3.1540 -1.3077 38 1 0.5491 2.1252 -1.3971 39 1 2.0700 1.5873 -2.1492 40 1 4.3742 -0.2195 -0.9158 41 1 5.1179 -1.2344 -2.2455 42 1 6.0895 -2.4641 -4.1378 43 1 6.5086 -1.3275 -6.2718 44 1 6.5923 4.2322 -5.7715 45 1 4.9448 2.3299 -4.6198 46 1 5.8524 1.5924 3.9006 47 1 5.8080 0.0393 4.7684 48 1 5.9009 0.0632 2.9909 49 1 2.2985 1.2662 4.9612 50 1 3.7037 0.7411 5.9190 51 1 3.7483 2.2950 5.0516 52 1 3.8655 -1.3803 2.8647 53 1 3.7729 -1.4048 4.6419 54 1 2.3670 -0.8795 3.6845 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095440376.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = -134.913169 kcal Electronic energy + Delta-G solvation = -34026.068722 eV Core-core repulsion = 29733.541298 eV Total energy + Delta-G solvation = -4292.527424 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.36558 -41.02395 -39.15278 -38.26036 -37.47856 -35.65248 -35.07887 -34.73867 -32.25411 -31.31170 -30.68468 -28.97320 -28.38788 -28.29431 -27.17557 -25.04192 -24.53674 -23.09008 -22.74021 -21.73048 -20.84879 -20.38369 -19.67378 -18.52290 -17.87659 -17.56355 -17.33384 -17.09856 -16.69340 -16.43641 -16.36907 -15.74345 -15.45176 -15.33793 -15.24624 -15.00110 -14.59257 -14.50822 -14.41275 -14.28655 -13.84236 -13.50466 -13.46242 -13.38854 -13.11505 -13.00045 -12.96022 -12.89328 -12.88526 -12.79853 -12.58906 -12.51133 -12.46730 -12.24545 -12.17388 -12.13461 -11.86809 -11.63507 -11.60825 -11.51167 -11.43161 -11.07838 -11.03807 -10.80155 -10.19046 -9.49472 -9.39564 -8.66802 -6.37784 0.36299 0.99251 1.00005 1.28307 1.37239 1.46596 1.53270 2.08392 2.19682 2.25937 2.77895 3.35996 3.58061 3.69190 3.72395 3.76290 3.80035 3.93957 3.95703 4.04123 4.30973 4.41639 4.49371 4.50365 4.56666 4.57854 4.60551 4.63345 4.72938 4.76214 4.80322 4.86151 4.88359 4.89109 4.94325 5.07358 5.08974 5.10183 5.13909 5.16615 5.18377 5.25699 5.27928 5.29256 5.32440 5.42061 5.44946 5.48273 5.52080 5.84809 5.91955 6.04728 6.27188 6.43553 6.60399 6.65608 6.88047 6.93637 7.24016 8.30149 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.002507 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.823249 B =11164.651637 C =11415.255809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.085 4.085 4 H 0.110 0.890 5 C -0.134 4.134 6 C 0.153 3.847 7 H 0.111 0.889 8 N -0.703 5.703 9 C 0.573 3.427 10 O -0.564 6.564 11 C -0.136 4.136 12 C -0.201 4.201 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.495 4.495 17 H 0.083 0.917 18 C 0.031 3.969 19 N -0.823 5.823 20 Si 0.982 3.018 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.124 4.124 25 C 0.477 3.523 26 O -0.511 6.511 27 O -0.345 6.345 28 C 0.106 3.894 29 C -0.184 4.184 30 C -0.136 4.136 31 C -0.180 4.180 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.412 0.588 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.287 0.713 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.067 0.933 52 H 0.061 0.939 53 H 0.091 0.909 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 -5.070 20.368 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.128 0.872 5 C -0.191 4.191 6 C 0.047 3.953 7 H 0.129 0.871 8 N -0.358 5.358 9 C 0.364 3.636 10 O -0.444 6.444 11 C -0.139 4.139 12 C -0.221 4.221 13 C -0.114 4.114 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.524 4.524 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.448 5.448 20 Si 0.802 3.198 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.190 1.190 24 C -0.145 4.145 25 C 0.319 3.681 26 O -0.399 6.399 27 O -0.261 6.261 28 C 0.071 3.929 29 C -0.241 4.241 30 C -0.193 4.193 31 C -0.237 4.237 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.251 0.749 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.119 0.881 51 H 0.086 0.914 52 H 0.080 0.920 53 H 0.110 0.890 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.327 -4.314 20.463 22.898 hybrid contribution 0.667 0.172 -0.874 1.113 sum -8.660 -4.142 19.589 21.815 Atomic orbital electron populations 1.21751 0.93759 1.02309 1.02476 1.21565 0.97861 0.94744 1.01418 1.21543 0.90247 0.98305 1.00300 0.87220 1.21828 1.01305 1.00073 0.95942 1.20576 0.96339 0.97046 0.81349 0.87132 1.45513 1.64892 1.14943 1.10465 1.18464 0.76402 0.86053 0.82710 1.90695 1.53017 1.17168 1.83538 1.19696 1.05124 0.95264 0.93841 1.20790 1.08948 0.92757 0.99582 1.20879 0.98382 0.99450 0.92659 1.21390 1.08219 0.95582 0.98498 1.17955 0.89631 0.92558 0.93370 1.19868 1.44958 0.92990 0.94564 0.89863 1.26835 0.91223 0.98786 1.01609 1.69888 1.32925 1.10856 1.31143 0.85163 0.78896 0.78159 0.77558 1.17539 1.19386 1.18953 1.21433 1.00454 0.99733 0.92855 1.23234 0.76541 0.82267 0.86016 1.90589 1.35516 1.26038 1.87777 1.86533 1.69127 1.55903 1.14562 1.22590 0.95091 0.92939 0.82309 1.22496 0.94327 1.02976 1.04307 1.21882 1.02208 1.01226 0.93972 1.22465 1.02056 0.94710 1.04441 0.92610 0.91984 0.91370 0.92875 0.92266 0.93281 0.90796 0.94997 0.74873 0.85736 0.84781 0.87373 0.90247 0.87787 0.92107 0.88791 0.92284 0.90767 0.88115 0.91430 0.92025 0.89026 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.67 71.98 0.70 -1.87 16 2 C -0.12 -2.58 5.01 30.59 0.15 -2.43 16 3 C -0.08 -2.04 2.21 -10.79 -0.02 -2.06 16 4 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 5 C -0.13 -3.92 7.47 71.98 0.54 -3.38 16 6 C 0.15 4.37 2.52 44.25 0.11 4.48 16 7 H 0.11 3.45 7.58 -2.38 -0.02 3.43 16 8 N -0.70 -23.63 4.12 -448.94 -1.85 -25.48 16 9 C 0.57 24.76 6.13 86.80 0.53 25.29 16 10 O -0.56 -27.32 13.45 -3.87 -0.05 -27.38 16 11 C -0.14 -6.49 5.87 -20.13 -0.12 -6.61 16 12 C -0.20 -8.32 9.55 22.70 0.22 -8.10 16 13 C -0.10 -3.95 10.01 22.18 0.22 -3.73 16 14 C -0.22 -10.33 9.78 22.77 0.22 -10.10 16 15 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 16 C -0.49 -26.94 9.05 23.47 0.21 -26.72 16 17 H 0.08 4.30 7.91 -2.91 -0.02 4.27 16 18 C 0.03 1.60 5.14 85.25 0.44 2.03 16 19 N -0.82 -45.56 10.96 21.82 0.24 -45.32 16 20 Si 0.98 39.52 29.60 68.60 2.03 41.55 16 21 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 C -0.12 -6.86 8.24 23.01 0.19 -6.68 16 25 C 0.48 12.31 5.29 71.23 0.38 12.69 16 26 O -0.51 -14.63 11.34 21.95 0.25 -14.38 16 27 O -0.34 -7.54 9.79 -51.34 -0.50 -8.04 16 28 C 0.11 1.81 1.13 -10.79 -0.01 1.80 16 29 C -0.18 -3.33 8.37 71.98 0.60 -2.73 16 30 C -0.14 -1.49 8.85 71.98 0.64 -0.85 16 31 C -0.18 -2.84 8.37 71.98 0.60 -2.24 16 32 H 0.05 1.04 6.56 -2.39 -0.02 1.02 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.35 7.76 -2.39 -0.02 1.33 16 36 H 0.06 1.24 7.05 -2.38 -0.02 1.22 16 37 H 0.05 1.58 7.53 -2.38 -0.02 1.57 16 38 H 0.07 1.79 6.57 -2.39 -0.02 1.78 16 39 H 0.03 1.13 5.77 -2.38 -0.01 1.12 16 40 H 0.41 13.03 5.81 -92.71 -0.54 12.49 16 41 H 0.12 4.26 6.38 -2.91 -0.02 4.24 16 42 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 43 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 45 H 0.10 6.32 5.74 -2.91 -0.02 6.31 16 46 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.41 5.89 -2.39 -0.01 1.39 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.06 1.29 5.89 -2.38 -0.01 1.28 16 53 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 54 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -66.14 421.03 5.96 -60.18 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: 0.37 Total: 46.54 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 5.48 Total: -27.66 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.61 Total: -70.80 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.31 Total: -49.80 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -66.14 5.96 -60.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095440376.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.738 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds