Wall clock time and date at job start Tue Mar 31 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48490 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46895 * 300.00163 * 3 2 1 6 6 H 1.48507 * 109.46800 * 59.99806 * 3 2 1 7 7 C 1.37873 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00093 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00125 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10682 * 359.95629 * 11 10 9 13 13 C 1.38191 * 119.99201 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38254 * 120.20737 * 0.02728 * 14 13 12 16 16 C 1.38648 * 120.00935 * 359.97261 * 15 14 13 17 17 N 1.40134 * 120.10201 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00068 * 24.81560 * 17 16 15 19 19 O 1.21297 * 119.99760 * 5.53391 * 18 17 16 20 20 C 1.50694 * 120.00342 * 185.53129 * 18 17 16 21 21 O 1.42901 * 109.47439 * 180.02562 * 20 18 17 22 22 C 1.35894 * 117.00177 * 179.97438 * 21 20 18 23 23 C 1.38770 * 120.04295 * 359.72643 * 22 21 20 24 24 C 1.38138 * 119.99489 * 179.75037 * 23 22 21 25 25 C 1.38249 * 120.07645 * 0.51970 * 24 23 22 26 26 C 1.38474 * 120.09039 * 359.75249 * 25 24 23 27 27 F 1.35096 * 120.00143 * 179.97438 * 26 25 24 28 28 C 1.38387 * 120.00247 * 359.97438 * 26 25 24 29 29 H 0.96998 * 119.99750 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47597 * 60.00006 * 9 7 2 31 31 H 1.09002 * 109.47181 * 299.99979 * 9 7 2 32 32 H 1.08006 * 120.00413 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 34 34 H 1.07995 * 119.89742 * 180.02562 * 14 13 12 35 35 H 1.08003 * 119.99544 * 180.02562 * 15 14 13 36 36 H 0.97000 * 120.00215 * 204.82117 * 17 16 15 37 37 H 1.09003 * 109.47333 * 300.00350 * 20 18 17 38 38 H 1.09001 * 109.47396 * 60.00192 * 20 18 17 39 39 H 1.08001 * 120.00117 * 359.97438 * 23 22 21 40 40 H 1.07996 * 119.95926 * 180.27562 * 24 23 22 41 41 H 1.08005 * 119.95484 * 179.76874 * 25 24 23 42 42 H 1.08000 * 120.04464 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0021 11 6 1.3827 -5.2948 0.0027 12 6 0.0034 -5.1410 0.0029 13 6 -0.8157 -6.2539 0.0039 14 6 -0.2655 -7.5228 0.0041 15 6 1.1075 -7.6856 0.0040 16 6 1.9374 -6.5750 0.0030 17 7 3.3293 -6.7378 0.0022 18 6 3.8753 -7.8685 -0.4874 19 8 3.1713 -8.7014 -1.0184 20 6 5.3604 -8.0981 -0.3753 21 8 5.6936 -9.3572 -0.9634 22 6 7.0034 -9.7190 -0.9460 23 6 7.9494 -8.8765 -0.3795 24 6 9.2799 -9.2475 -0.3578 25 6 9.6720 -10.4530 -0.9095 26 6 8.7316 -11.2937 -1.4808 27 9 9.1170 -12.4710 -2.0199 28 6 7.3971 -10.9280 -1.4994 29 1 -0.4850 0.8400 0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 -0.4297 -4.1516 0.0031 33 1 -1.8889 -6.1327 -0.0005 34 1 -0.9102 -8.3892 0.0045 35 1 1.5335 -8.6780 0.0037 36 1 3.8998 -6.0367 0.3542 37 1 5.8916 -7.3019 -0.8968 38 1 5.6495 -8.0999 0.6757 39 1 7.6450 -7.9324 0.0476 40 1 10.0150 -8.5935 0.0873 41 1 10.7133 -10.7394 -0.8948 42 1 6.6630 -11.5834 -1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:04 Heat of formation + Delta-G solvation = -63.069853 kcal Electronic energy + Delta-G solvation = -27375.489588 eV Core-core repulsion = 23133.703900 eV Total energy + Delta-G solvation = -4241.785687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.30467 -40.96964 -40.13693 -38.32509 -37.41456 -34.85034 -33.33796 -31.63309 -30.84943 -30.55147 -29.95366 -28.68556 -27.97702 -23.76382 -23.41678 -23.04496 -22.79277 -21.97207 -20.45770 -19.08968 -18.29084 -17.40502 -16.94684 -16.82621 -16.74678 -16.47991 -16.31464 -16.10799 -15.95074 -15.13054 -15.09580 -14.86892 -14.42660 -14.24919 -14.12376 -13.78706 -13.36556 -13.17798 -13.08191 -13.04519 -12.70454 -12.45918 -12.32253 -12.30876 -11.86265 -11.57416 -11.48795 -11.30318 -11.03331 -10.82489 -10.54525 -10.17300 -9.82790 -9.75876 -9.33846 -9.31695 -9.25573 -8.77738 -8.72086 -8.11882 -6.70018 -6.35018 -4.41255 0.67290 0.82991 1.36671 1.60225 2.03791 2.33234 2.39877 3.13261 3.15325 3.20941 3.23319 3.27278 3.50212 3.94099 4.00444 4.15405 4.22215 4.37497 4.45100 4.55531 4.59494 4.62115 4.86298 4.93103 5.02804 5.18109 5.26619 5.48423 5.49490 5.62189 5.67324 5.72265 5.74911 5.85419 6.09882 6.20980 6.34729 6.45373 6.60432 6.77828 6.80580 6.85768 6.89305 7.18850 7.26528 7.57380 7.79846 7.87848 8.59811 9.23333 10.76075 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.001977 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.040764 B =14159.434183 C =16433.884772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.078 3.922 10 S -0.172 6.172 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.654 5.654 18 C 0.515 3.485 19 O -0.499 6.499 20 C 0.041 3.959 21 O -0.284 6.284 22 C 0.162 3.838 23 C -0.221 4.221 24 C -0.048 4.048 25 C -0.193 4.193 26 C 0.139 3.861 27 F -0.134 7.134 28 C -0.187 4.187 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.472 -18.312 1.456 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.068 4.068 10 S 0.074 5.926 11 C -0.209 4.209 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.143 4.143 15 C -0.138 4.138 16 C 0.048 3.952 17 N -0.300 5.300 18 C 0.301 3.699 19 O -0.373 6.373 20 C -0.037 4.037 21 O -0.195 6.195 22 C 0.115 3.885 23 C -0.240 4.240 24 C -0.066 4.066 25 C -0.212 4.212 26 C 0.120 3.880 27 F -0.112 7.112 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.253 0.747 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.973 -18.776 0.976 23.425 hybrid contribution -0.626 1.249 0.154 1.405 sum 13.346 -17.527 1.130 22.059 Atomic orbital electron populations 1.69947 1.06152 1.27570 1.48830 1.24957 0.95014 0.99365 0.94324 0.86262 0.79987 0.82325 0.77893 1.19395 1.20602 1.20610 1.20631 0.93472 0.88469 1.53396 0.91291 1.21384 0.94073 0.90374 1.01002 1.84962 1.18550 0.98342 1.90724 1.21796 0.97517 0.95936 1.05639 1.21242 0.91501 1.00129 1.01016 1.21065 0.99622 0.92257 1.00616 1.20961 0.94347 0.97128 1.01843 1.21210 0.93166 0.98257 1.01177 1.17135 0.81637 0.92358 1.04038 1.43260 1.06183 1.19497 1.61082 1.19990 0.89211 0.82083 0.78637 1.90728 1.62186 1.43828 1.40525 1.22504 0.94175 0.86450 1.00593 1.86148 1.21952 1.36104 1.75325 1.18627 0.82833 0.92968 0.94044 1.21399 0.93891 1.01717 1.06978 1.20812 0.95354 0.94964 0.95503 1.21084 0.99960 0.95977 1.04181 1.17272 0.92208 0.82366 0.96176 1.91525 1.91541 1.44593 1.83575 1.20267 0.95259 0.97736 1.07367 0.92290 0.93631 0.93647 0.84594 0.85984 0.85996 0.83926 0.74704 0.88020 0.88084 0.84438 0.84407 0.84507 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.52 -13.64 9.13 -34.44 -0.31 -13.95 16 8 H 0.07 1.79 7.71 -52.48 -0.40 1.38 16 9 C 0.08 1.88 4.09 36.00 0.15 2.03 16 10 S -0.17 -3.37 20.55 -107.50 -2.21 -5.58 16 11 C -0.09 -1.69 6.12 -38.90 -0.24 -1.93 16 12 C -0.11 -2.02 9.36 -39.40 -0.37 -2.39 16 13 C -0.12 -1.73 10.04 -39.57 -0.40 -2.12 16 14 C -0.12 -1.73 10.04 -39.55 -0.40 -2.12 16 15 C -0.12 -1.81 8.72 -39.42 -0.34 -2.16 16 16 C 0.15 2.41 6.44 -83.43 -0.54 1.87 16 17 N -0.65 -8.70 5.17 -9.71 -0.05 -8.75 16 18 C 0.52 6.60 7.71 -10.99 -0.08 6.52 16 19 O -0.50 -8.20 13.67 -14.37 -0.20 -8.40 16 20 C 0.04 0.36 5.22 36.00 0.19 0.55 16 21 O -0.28 -3.15 9.67 -39.32 -0.38 -3.53 16 22 C 0.16 1.53 6.69 -39.22 -0.26 1.27 16 23 C -0.22 -1.59 9.04 -39.42 -0.36 -1.95 16 24 C -0.05 -0.30 10.04 -39.61 -0.40 -0.70 16 25 C -0.19 -1.38 10.02 -39.49 -0.40 -1.77 16 26 C 0.14 1.24 7.30 -39.44 -0.29 0.95 16 27 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 28 C -0.19 -1.79 9.97 -39.37 -0.39 -2.18 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 31 H 0.05 1.14 7.75 -51.92 -0.40 0.73 16 32 H 0.14 2.55 5.88 -52.48 -0.31 2.24 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.14 2.21 5.79 -52.48 -0.30 1.90 16 36 H 0.42 4.76 7.65 -40.82 -0.31 4.44 16 37 H 0.10 0.66 7.65 -51.93 -0.40 0.26 16 38 H 0.10 0.59 7.67 -51.93 -0.40 0.19 16 39 H 0.14 0.68 6.30 -52.49 -0.33 0.35 16 40 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 42 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -31.11 378.60 -10.42 -41.53 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.51 Total: 5.17 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -4.54 Total: -16.36 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.69 Total: -32.48 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.58 Total: -11.93 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.21 Total: -5.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.11 -10.42 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.540 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds