Wall clock time and date at job start Tue Mar 31 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48490 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46895 * 300.00163 * 3 2 1 6 6 H 1.48507 * 109.46800 * 59.99806 * 3 2 1 7 7 C 1.37873 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00093 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00125 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10682 * 359.95629 * 11 10 9 13 13 C 1.38191 * 119.99201 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38254 * 120.20737 * 0.02728 * 14 13 12 16 16 C 1.38648 * 120.00935 * 359.97261 * 15 14 13 17 17 N 1.40134 * 120.10201 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00068 * 24.81560 * 17 16 15 19 19 O 1.21297 * 119.99760 * 5.53391 * 18 17 16 20 20 C 1.50694 * 120.00342 * 185.53129 * 18 17 16 21 21 O 1.42901 * 109.47439 * 180.02562 * 20 18 17 22 22 C 1.35894 * 117.00177 * 179.97438 * 21 20 18 23 23 C 1.38770 * 120.04295 * 359.72643 * 22 21 20 24 24 C 1.38138 * 119.99489 * 179.75037 * 23 22 21 25 25 C 1.38249 * 120.07645 * 0.51970 * 24 23 22 26 26 C 1.38474 * 120.09039 * 359.75249 * 25 24 23 27 27 F 1.35096 * 120.00143 * 179.97438 * 26 25 24 28 28 C 1.38387 * 120.00247 * 359.97438 * 26 25 24 29 29 H 0.96998 * 119.99750 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47597 * 60.00006 * 9 7 2 31 31 H 1.09002 * 109.47181 * 299.99979 * 9 7 2 32 32 H 1.08006 * 120.00413 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 34 34 H 1.07995 * 119.89742 * 180.02562 * 14 13 12 35 35 H 1.08003 * 119.99544 * 180.02562 * 15 14 13 36 36 H 0.97000 * 120.00215 * 204.82117 * 17 16 15 37 37 H 1.09003 * 109.47333 * 300.00350 * 20 18 17 38 38 H 1.09001 * 109.47396 * 60.00192 * 20 18 17 39 39 H 1.08001 * 120.00117 * 359.97438 * 23 22 21 40 40 H 1.07996 * 119.95926 * 180.27562 * 24 23 22 41 41 H 1.08005 * 119.95484 * 179.76874 * 25 24 23 42 42 H 1.08000 * 120.04464 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0021 11 6 1.3827 -5.2948 0.0027 12 6 0.0034 -5.1410 0.0029 13 6 -0.8157 -6.2539 0.0039 14 6 -0.2655 -7.5228 0.0041 15 6 1.1075 -7.6856 0.0040 16 6 1.9374 -6.5750 0.0030 17 7 3.3293 -6.7378 0.0022 18 6 3.8753 -7.8685 -0.4874 19 8 3.1713 -8.7014 -1.0184 20 6 5.3604 -8.0981 -0.3753 21 8 5.6936 -9.3572 -0.9634 22 6 7.0034 -9.7190 -0.9460 23 6 7.9494 -8.8765 -0.3795 24 6 9.2799 -9.2475 -0.3578 25 6 9.6720 -10.4530 -0.9095 26 6 8.7316 -11.2937 -1.4808 27 9 9.1170 -12.4710 -2.0199 28 6 7.3971 -10.9280 -1.4994 29 1 -0.4850 0.8400 0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 -0.4297 -4.1516 0.0031 33 1 -1.8889 -6.1327 -0.0005 34 1 -0.9102 -8.3892 0.0045 35 1 1.5335 -8.6780 0.0037 36 1 3.8998 -6.0367 0.3542 37 1 5.8916 -7.3019 -0.8968 38 1 5.6495 -8.0999 0.6757 39 1 7.6450 -7.9324 0.0476 40 1 10.0150 -8.5935 0.0873 41 1 10.7133 -10.7394 -0.8948 42 1 6.6630 -11.5834 -1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:03 Heat of formation + Delta-G solvation = -78.767487 kcal Electronic energy + Delta-G solvation = -27376.170288 eV Core-core repulsion = 23133.703900 eV Total energy + Delta-G solvation = -4242.466388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.98632 -41.89855 -40.98472 -39.43262 -38.14396 -36.01559 -35.32317 -32.32453 -32.15044 -31.37071 -30.77468 -30.59480 -28.85925 -25.48916 -24.29495 -24.03911 -23.83820 -22.97131 -21.53225 -19.77520 -19.49503 -18.63359 -18.17389 -17.99142 -17.56852 -17.44757 -17.14568 -16.88180 -16.77547 -16.66680 -16.08742 -16.03279 -15.70162 -15.32100 -14.87102 -14.76077 -14.73078 -14.69662 -14.42126 -14.24730 -13.95696 -13.70196 -13.35965 -13.14914 -12.86812 -12.79171 -12.72948 -12.54056 -12.15770 -12.09444 -11.92847 -11.63273 -11.59840 -11.00519 -10.96145 -10.84469 -10.53679 -9.93956 -9.39247 -9.35592 -8.35806 -8.20642 -6.49999 0.08620 0.14029 0.24738 0.30198 0.73452 1.27183 1.37771 1.41075 1.42295 1.55412 1.77065 2.35185 2.39111 2.56212 2.74801 3.00050 3.29696 3.36411 3.75124 3.85815 3.91759 4.00888 4.02532 4.09906 4.12801 4.25281 4.34908 4.39707 4.44778 4.46733 4.83101 4.86368 4.90798 4.99034 5.06510 5.10438 5.19170 5.24139 5.32412 5.38931 5.52071 5.54919 5.64473 5.81577 5.96346 6.13066 6.27282 6.57655 6.85969 7.19139 8.76329 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.001977 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.040764 B =14159.434183 C =16433.884772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.079 3.921 10 S -0.146 6.146 11 C -0.120 4.120 12 C -0.131 4.131 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.150 3.850 17 N -0.650 5.650 18 C 0.515 3.485 19 O -0.539 6.539 20 C 0.045 3.955 21 O -0.312 6.312 22 C 0.144 3.856 23 C -0.216 4.216 24 C -0.043 4.043 25 C -0.190 4.190 26 C 0.121 3.879 27 F -0.144 7.144 28 C -0.207 4.207 29 H 0.271 0.729 30 H 0.020 0.980 31 H 0.023 0.977 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.424 0.576 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.172 0.828 41 H 0.157 0.843 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.630 -18.284 2.286 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.089 0.911 9 C -0.068 4.068 10 S 0.099 5.901 11 C -0.235 4.235 12 C -0.156 4.156 13 C -0.135 4.135 14 C -0.128 4.128 15 C -0.147 4.147 16 C 0.049 3.951 17 N -0.297 5.297 18 C 0.303 3.697 19 O -0.415 6.415 20 C -0.033 4.033 21 O -0.225 6.225 22 C 0.099 3.901 23 C -0.234 4.234 24 C -0.061 4.061 25 C -0.209 4.209 26 C 0.101 3.899 27 F -0.123 7.123 28 C -0.227 4.227 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.183 0.817 40 H 0.190 0.810 41 H 0.174 0.826 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.153 -18.766 1.815 24.827 hybrid contribution -1.326 1.068 -0.107 1.706 sum 14.828 -17.697 1.708 23.151 Atomic orbital electron populations 1.70062 1.07744 1.28619 1.49646 1.25908 0.95856 1.03086 0.93684 0.85210 0.78998 0.77720 0.78020 1.18381 1.20173 1.19976 1.20982 0.93712 0.89693 1.53355 0.91149 1.21025 0.94677 0.92435 0.98694 1.84474 1.16823 0.97156 1.91645 1.21796 0.97588 0.95806 1.08350 1.21237 0.91970 1.00200 1.02178 1.21329 1.00743 0.91655 0.99799 1.21375 0.94318 0.97911 0.99187 1.21419 0.93868 0.98109 1.01319 1.17258 0.83257 0.91649 1.02925 1.43289 1.05190 1.20187 1.61031 1.20745 0.90913 0.80908 0.77116 1.90705 1.63609 1.44987 1.42246 1.22651 0.90925 0.86633 1.03079 1.86088 1.23130 1.37171 1.76135 1.18753 0.82682 0.93439 0.95236 1.21744 0.93779 1.02111 1.05786 1.21243 0.95689 0.94742 0.94399 1.21411 1.00549 0.95882 1.03059 1.17493 0.92475 0.82642 0.97267 1.91494 1.91574 1.45274 1.83921 1.20338 0.95612 0.98365 1.08374 0.92035 0.96200 0.95843 0.86796 0.83370 0.82525 0.83624 0.73670 0.85160 0.84469 0.81740 0.81018 0.82559 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.15 13.29 21.45 0.28 -51.87 16 2 C 0.02 0.86 5.46 84.65 0.46 1.32 16 3 Si 0.98 41.38 29.54 68.60 2.03 43.41 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.54 -28.79 9.13 25.60 0.23 -28.56 16 8 H 0.07 3.65 7.71 -2.91 -0.02 3.63 16 9 C 0.08 3.97 4.09 71.23 0.29 4.26 16 10 S -0.15 -5.80 20.55 -56.49 -1.16 -6.96 16 11 C -0.12 -4.39 6.12 22.71 0.14 -4.25 16 12 C -0.13 -4.75 9.36 22.39 0.21 -4.54 16 13 C -0.12 -3.34 10.04 22.27 0.22 -3.11 16 14 C -0.11 -2.83 10.04 22.29 0.22 -2.61 16 15 C -0.13 -3.76 8.72 22.37 0.20 -3.57 16 16 C 0.15 4.77 6.44 38.22 0.25 5.02 16 17 N -0.65 -16.48 5.17 -303.01 -1.57 -18.05 16 18 C 0.51 12.52 7.71 87.66 0.68 13.19 16 19 O -0.54 -17.50 13.67 15.95 0.22 -17.28 16 20 C 0.04 0.67 5.22 71.23 0.37 1.04 16 21 O -0.31 -6.60 9.67 -73.33 -0.71 -7.31 16 22 C 0.14 2.56 6.69 22.50 0.15 2.71 16 23 C -0.22 -2.41 9.04 22.37 0.20 -2.21 16 24 C -0.04 -0.38 10.04 22.25 0.22 -0.16 16 25 C -0.19 -2.29 10.02 22.33 0.22 -2.06 16 26 C 0.12 2.10 7.30 22.36 0.16 2.26 16 27 F -0.14 -2.81 17.27 44.97 0.78 -2.03 16 28 C -0.21 -4.02 9.97 22.41 0.22 -3.80 16 29 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.02 1.07 7.75 -2.39 -0.02 1.05 16 31 H 0.02 1.24 7.75 -2.39 -0.02 1.23 16 32 H 0.11 4.58 5.88 -2.91 -0.02 4.56 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.15 4.35 5.79 -2.91 -0.02 4.34 16 36 H 0.42 9.00 7.65 -92.71 -0.71 8.29 16 37 H 0.13 1.22 7.65 -2.39 -0.02 1.20 16 38 H 0.14 1.06 7.67 -2.39 -0.02 1.04 16 39 H 0.17 0.85 6.30 -2.91 -0.02 0.84 16 40 H 0.17 0.38 8.06 -2.91 -0.02 0.35 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -70.59 378.60 4.70 -65.89 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.38 Total: 19.25 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 4.46 Total: -25.05 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.28 Total: -69.91 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.49 Total: -24.59 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -5.80 SS G_CDS: -1.16 Total: -6.96 kcal Total: -70.59 4.70 -65.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.878 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds