Wall clock time and date at job start Tue Mar 31 2020 05:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48495 * 109.47205 * 270.00380 * 3 2 1 5 5 H 1.48507 * 109.46761 * 30.00146 * 3 2 1 6 6 H 1.48496 * 109.47111 * 149.99839 * 3 2 1 7 7 C 1.37883 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99436 * 179.97438 * 7 2 1 10 10 S 1.81404 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.76203 * 102.99939 * 180.02562 * 10 9 7 12 12 C 1.38792 * 120.10357 * 359.97438 * 11 10 9 13 13 C 1.38195 * 119.98865 * 180.02562 * 12 11 10 14 14 C 1.38301 * 120.19835 * 0.02562 * 13 12 11 15 15 C 1.38248 * 120.21159 * 359.97438 * 14 13 12 16 16 C 1.38648 * 120.00804 * 0.02562 * 15 14 13 17 17 N 1.40146 * 120.09782 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00216 * 24.80740 * 17 16 15 19 19 O 1.21298 * 119.99946 * 5.52654 * 18 17 16 20 20 C 1.50691 * 120.00335 * 185.52710 * 18 17 16 21 21 O 1.42897 * 109.47397 * 179.97438 * 20 18 17 22 22 C 1.35949 * 117.00070 * 180.02562 * 21 20 18 23 23 C 1.38701 * 120.03025 * 359.71982 * 22 21 20 24 24 C 1.38152 * 119.97181 * 179.79084 * 23 22 21 25 25 C 1.38460 * 120.02606 * 0.49312 * 24 23 22 26 26 F 1.35106 * 119.96491 * 179.72131 * 25 24 23 27 27 C 1.38448 * 120.06272 * 359.73831 * 25 24 23 28 28 C 1.38152 * 120.02975 * 0.02562 * 27 25 24 29 29 H 0.96999 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47110 * 60.00850 * 9 7 2 31 31 H 1.09003 * 109.47645 * 299.99883 * 9 7 2 32 32 H 1.08003 * 120.00012 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.89990 * 180.02562 * 13 12 11 34 34 H 1.08004 * 119.89447 * 180.02562 * 14 13 12 35 35 H 1.08001 * 119.99264 * 179.72588 * 15 14 13 36 36 H 0.97003 * 119.99893 * 204.80005 * 17 16 15 37 37 H 1.09000 * 109.47236 * 300.00267 * 20 18 17 38 38 H 1.09009 * 109.46852 * 60.00170 * 20 18 17 39 39 H 1.08001 * 120.01999 * 0.02562 * 23 22 21 40 40 H 1.07994 * 119.98914 * 180.20710 * 24 23 22 41 41 H 1.08001 * 119.98669 * 180.02562 * 27 25 24 42 42 H 1.07999 * 120.01723 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 16 4.1162 -2.9043 -0.0025 11 6 5.8670 -2.7057 -0.0023 12 6 6.4233 -1.4342 -0.0018 13 6 7.7968 -1.2812 -0.0021 14 6 8.6205 -2.3922 -0.0035 15 6 8.0751 -3.6625 -0.0041 16 6 6.6983 -3.8261 -0.0037 17 7 6.1435 -5.1130 -0.0048 18 6 6.8497 -6.1518 0.4836 19 8 7.9229 -5.9591 1.0149 20 6 6.3061 -7.5526 0.3696 21 8 7.2303 -8.4714 0.9556 22 6 6.8893 -9.7873 0.9354 23 6 5.6872 -10.1842 0.3685 24 6 5.3438 -11.5221 0.3447 25 6 6.1943 -12.4656 0.8957 26 9 5.8547 -13.7731 0.8768 27 6 7.3923 -12.0704 1.4662 28 6 7.7404 -10.7336 1.4869 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 5.7829 -0.5645 -0.0011 33 1 8.2282 -0.2911 -0.0013 34 1 9.6932 -2.2669 -0.0034 35 1 8.7217 -4.5276 -0.0096 36 1 5.2510 -5.2561 -0.3570 37 1 5.3509 -7.6152 0.8910 38 1 6.1632 -7.8024 -0.6818 39 1 5.0217 -9.4481 -0.0576 40 1 4.4095 -11.8318 -0.0996 41 1 8.0550 -12.8074 1.8952 42 1 8.6747 -10.4254 1.9324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:07 Heat of formation + Delta-G solvation = -58.132898 kcal Electronic energy + Delta-G solvation = -27396.372894 eV Core-core repulsion = 23154.801289 eV Total energy + Delta-G solvation = -4241.571605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.17530 -40.99577 -40.17999 -38.40611 -37.39995 -34.92476 -33.24490 -31.80239 -31.04601 -30.77977 -29.70882 -29.43042 -27.93359 -23.87334 -23.34926 -22.90355 -22.71246 -21.94652 -20.53356 -18.90450 -18.35862 -17.76175 -17.44912 -16.93033 -16.84406 -16.74235 -16.52366 -15.88537 -15.22352 -15.13990 -15.05630 -14.84524 -14.35838 -14.17993 -14.09736 -13.78328 -13.49568 -13.43547 -13.38447 -13.34585 -12.84327 -12.72722 -12.60710 -12.53898 -11.96651 -11.45083 -11.38791 -11.31700 -10.96547 -10.72222 -10.50134 -10.35657 -9.92502 -9.84637 -9.65347 -9.40537 -9.37096 -8.85402 -8.55345 -8.22829 -6.82973 -6.34103 -4.38816 0.69372 0.77086 1.26510 1.47608 2.00151 2.22901 2.33851 3.10099 3.11999 3.16013 3.18526 3.22799 3.33977 3.88655 3.89733 4.11729 4.16899 4.29398 4.32411 4.50563 4.58943 4.68548 4.85563 4.97073 5.04052 5.09207 5.15052 5.37127 5.41461 5.57141 5.59086 5.66234 5.70601 5.74623 5.96693 6.18344 6.24765 6.33298 6.34489 6.44740 6.48648 6.65660 6.81228 7.07197 7.18683 7.22038 7.81961 8.10543 8.64921 9.20335 10.77395 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.001958 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.546741 B =14294.104656 C =16316.841719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.034 3.966 10 S -0.132 6.132 11 C -0.102 4.102 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.152 3.848 17 N -0.656 5.656 18 C 0.516 3.484 19 O -0.499 6.499 20 C 0.040 3.960 21 O -0.285 6.285 22 C 0.123 3.877 23 C -0.182 4.182 24 C -0.110 4.110 25 C 0.058 3.942 26 F -0.142 7.142 27 C -0.112 4.112 28 C -0.119 4.119 29 H 0.270 0.730 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.416 0.584 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -18.283 -0.764 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.122 4.122 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.103 0.897 9 C -0.113 4.113 10 S 0.115 5.885 11 C -0.217 4.217 12 C -0.143 4.143 13 C -0.136 4.136 14 C -0.141 4.141 15 C -0.136 4.136 16 C 0.052 3.948 17 N -0.302 5.302 18 C 0.302 3.698 19 O -0.372 6.372 20 C -0.038 4.038 21 O -0.197 6.197 22 C 0.077 3.923 23 C -0.201 4.201 24 C -0.129 4.129 25 C 0.038 3.962 26 F -0.120 7.120 27 C -0.131 4.131 28 C -0.138 4.138 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.254 0.746 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.242 -19.048 -0.307 24.398 hybrid contribution 0.195 1.867 -0.301 1.901 sum 15.437 -17.182 -0.607 23.106 Atomic orbital electron populations 1.69843 1.06151 1.27595 1.48619 1.24826 0.94773 0.98776 0.93809 0.86833 0.80408 0.83530 0.79001 1.19664 1.20570 1.18921 1.20372 0.86414 0.95508 1.53876 0.89693 1.21734 1.01397 0.88195 0.99997 1.85078 0.93249 1.19622 1.90592 1.21894 0.99150 0.94813 1.05853 1.21139 0.95730 0.95604 1.01802 1.21047 0.93076 0.98778 1.00669 1.20968 0.99607 0.91892 1.01637 1.21229 0.92760 0.98709 1.00874 1.17116 0.91893 0.82113 1.03687 1.43284 1.20103 1.05609 1.61185 1.20011 0.85511 0.85749 0.78502 1.90725 1.21233 1.84812 1.40457 1.22483 0.93519 0.87217 1.00621 1.86165 1.44652 1.13254 1.75626 1.19058 0.93643 0.83378 0.96244 1.21184 0.97274 0.96804 1.04830 1.20968 1.00038 0.92107 0.99803 1.17607 0.96026 0.78342 1.04178 1.91501 1.92433 1.33123 1.94969 1.20978 0.95833 0.96246 1.00057 1.20309 1.00755 0.90371 1.02325 0.91966 0.93740 0.94233 0.85207 0.85998 0.85883 0.83798 0.74640 0.88069 0.88170 0.84141 0.84219 0.83921 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.96 55.43 0.77 -24.72 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 19.87 27.47 -169.99 -4.67 15.20 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.52 -13.91 9.68 -34.44 -0.33 -14.25 16 8 H 0.09 2.46 7.96 -52.49 -0.42 2.04 16 9 C 0.03 0.77 3.16 36.01 0.11 0.88 16 10 S -0.13 -2.50 20.55 -107.50 -2.21 -4.71 16 11 C -0.10 -1.73 6.12 -38.90 -0.24 -1.97 16 12 C -0.12 -1.93 9.36 -39.39 -0.37 -2.30 16 13 C -0.12 -1.59 10.04 -39.57 -0.40 -1.99 16 14 C -0.12 -1.58 10.04 -39.55 -0.40 -1.98 16 15 C -0.11 -1.67 8.71 -39.43 -0.34 -2.01 16 16 C 0.15 2.34 6.44 -83.43 -0.54 1.80 16 17 N -0.66 -8.31 5.17 -9.71 -0.05 -8.36 16 18 C 0.52 6.33 7.71 -10.99 -0.08 6.24 16 19 O -0.50 -7.84 13.67 -14.37 -0.20 -8.04 16 20 C 0.04 0.34 5.22 36.00 0.19 0.53 16 21 O -0.28 -3.00 9.67 -39.49 -0.38 -3.38 16 22 C 0.12 1.09 6.69 -39.24 -0.26 0.83 16 23 C -0.18 -1.34 9.04 -39.44 -0.36 -1.69 16 24 C -0.11 -0.82 10.02 -39.53 -0.40 -1.21 16 25 C 0.06 0.48 7.30 -39.42 -0.29 0.19 16 26 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 27 C -0.11 -0.83 10.02 -39.54 -0.40 -1.22 16 28 C -0.12 -0.96 9.99 -39.44 -0.39 -1.35 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.04 0.99 6.81 -51.93 -0.35 0.64 16 31 H 0.04 0.86 7.18 -51.92 -0.37 0.48 16 32 H 0.13 2.18 5.88 -52.48 -0.31 1.87 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.14 2.10 5.80 -52.49 -0.30 1.80 16 36 H 0.42 4.55 7.65 -40.82 -0.31 4.24 16 37 H 0.10 0.63 7.65 -51.93 -0.40 0.24 16 38 H 0.10 0.56 7.67 -51.92 -0.40 0.16 16 39 H 0.14 0.72 6.30 -52.49 -0.33 0.39 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -31.89 375.00 -10.11 -42.00 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.48 Total: 4.94 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -4.59 Total: -17.32 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.72 Total: -33.08 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.58 Total: -11.41 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.21 Total: -4.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.89 -10.11 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.132 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds