Wall clock time and date at job start Tue Mar 31 2020 05:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48495 * 109.47205 * 270.00380 * 3 2 1 5 5 H 1.48507 * 109.46761 * 30.00146 * 3 2 1 6 6 H 1.48496 * 109.47111 * 149.99839 * 3 2 1 7 7 C 1.37883 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99436 * 179.97438 * 7 2 1 10 10 S 1.81404 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.76203 * 102.99939 * 180.02562 * 10 9 7 12 12 C 1.38792 * 120.10357 * 359.97438 * 11 10 9 13 13 C 1.38195 * 119.98865 * 180.02562 * 12 11 10 14 14 C 1.38301 * 120.19835 * 0.02562 * 13 12 11 15 15 C 1.38248 * 120.21159 * 359.97438 * 14 13 12 16 16 C 1.38648 * 120.00804 * 0.02562 * 15 14 13 17 17 N 1.40146 * 120.09782 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00216 * 24.80740 * 17 16 15 19 19 O 1.21298 * 119.99946 * 5.52654 * 18 17 16 20 20 C 1.50691 * 120.00335 * 185.52710 * 18 17 16 21 21 O 1.42897 * 109.47397 * 179.97438 * 20 18 17 22 22 C 1.35949 * 117.00070 * 180.02562 * 21 20 18 23 23 C 1.38701 * 120.03025 * 359.71982 * 22 21 20 24 24 C 1.38152 * 119.97181 * 179.79084 * 23 22 21 25 25 C 1.38460 * 120.02606 * 0.49312 * 24 23 22 26 26 F 1.35106 * 119.96491 * 179.72131 * 25 24 23 27 27 C 1.38448 * 120.06272 * 359.73831 * 25 24 23 28 28 C 1.38152 * 120.02975 * 0.02562 * 27 25 24 29 29 H 0.96999 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47110 * 60.00850 * 9 7 2 31 31 H 1.09003 * 109.47645 * 299.99883 * 9 7 2 32 32 H 1.08003 * 120.00012 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.89990 * 180.02562 * 13 12 11 34 34 H 1.08004 * 119.89447 * 180.02562 * 14 13 12 35 35 H 1.08001 * 119.99264 * 179.72588 * 15 14 13 36 36 H 0.97003 * 119.99893 * 204.80005 * 17 16 15 37 37 H 1.09000 * 109.47236 * 300.00267 * 20 18 17 38 38 H 1.09009 * 109.46852 * 60.00170 * 20 18 17 39 39 H 1.08001 * 120.01999 * 0.02562 * 23 22 21 40 40 H 1.07994 * 119.98914 * 180.20710 * 24 23 22 41 41 H 1.08001 * 119.98669 * 180.02562 * 27 25 24 42 42 H 1.07999 * 120.01723 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 16 4.1162 -2.9043 -0.0025 11 6 5.8670 -2.7057 -0.0023 12 6 6.4233 -1.4342 -0.0018 13 6 7.7968 -1.2812 -0.0021 14 6 8.6205 -2.3922 -0.0035 15 6 8.0751 -3.6625 -0.0041 16 6 6.6983 -3.8261 -0.0037 17 7 6.1435 -5.1130 -0.0048 18 6 6.8497 -6.1518 0.4836 19 8 7.9229 -5.9591 1.0149 20 6 6.3061 -7.5526 0.3696 21 8 7.2303 -8.4714 0.9556 22 6 6.8893 -9.7873 0.9354 23 6 5.6872 -10.1842 0.3685 24 6 5.3438 -11.5221 0.3447 25 6 6.1943 -12.4656 0.8957 26 9 5.8547 -13.7731 0.8768 27 6 7.3923 -12.0704 1.4662 28 6 7.7404 -10.7336 1.4869 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 5.7829 -0.5645 -0.0011 33 1 8.2282 -0.2911 -0.0013 34 1 9.6932 -2.2669 -0.0034 35 1 8.7217 -4.5276 -0.0096 36 1 5.2510 -5.2561 -0.3570 37 1 5.3509 -7.6152 0.8910 38 1 6.1632 -7.8024 -0.6818 39 1 5.0217 -9.4481 -0.0576 40 1 4.4095 -11.8318 -0.0996 41 1 8.0550 -12.8074 1.8952 42 1 8.6747 -10.4254 1.9324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:07 Heat of formation + Delta-G solvation = -75.017384 kcal Electronic energy + Delta-G solvation = -27397.105060 eV Core-core repulsion = 23154.801289 eV Total energy + Delta-G solvation = -4242.303771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.82997 -41.88546 -40.97430 -39.43185 -38.10704 -36.00514 -35.24980 -32.41363 -32.29811 -31.63699 -31.28048 -30.44787 -28.73541 -25.11821 -24.37546 -24.10762 -23.61224 -22.94832 -21.54009 -19.62818 -19.49835 -18.94550 -18.42644 -18.22085 -17.87196 -17.54292 -17.33652 -16.65832 -16.55797 -16.11666 -16.04803 -15.74461 -15.64652 -15.27508 -15.06138 -14.93897 -14.77389 -14.63802 -14.38502 -14.25930 -14.03312 -13.99438 -13.40150 -13.37285 -13.14641 -12.79095 -12.67676 -12.21462 -12.12390 -12.00840 -11.91197 -11.78362 -11.61001 -11.02031 -10.96052 -10.91457 -10.60281 -10.20477 -9.36729 -9.17785 -8.40686 -8.23845 -6.51294 0.13612 0.14455 0.16687 0.30630 0.65576 1.30834 1.33495 1.34741 1.39086 1.44330 1.71469 2.26575 2.47281 2.53858 2.75485 2.92725 3.28406 3.35107 3.70262 3.79142 3.84907 3.95870 4.01899 4.13632 4.15655 4.30072 4.34639 4.43108 4.47032 4.53474 4.55440 4.65221 4.84263 4.89470 5.09768 5.10389 5.12886 5.17666 5.23524 5.27588 5.39534 5.54177 5.63662 5.96898 6.01140 6.13809 6.27835 6.52653 6.85568 7.12027 8.74315 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.001958 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.546741 B =14294.104656 C =16316.841719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.244 1.244 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.035 3.965 10 S -0.134 6.134 11 C -0.123 4.123 12 C -0.132 4.132 13 C -0.113 4.113 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.149 3.851 17 N -0.653 5.653 18 C 0.516 3.484 19 O -0.536 6.536 20 C 0.042 3.958 21 O -0.309 6.309 22 C 0.108 3.892 23 C -0.180 4.180 24 C -0.113 4.113 25 C 0.040 3.960 26 F -0.150 7.150 27 C -0.111 4.111 28 C -0.129 4.129 29 H 0.273 0.727 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.423 0.577 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.441 -17.975 -1.149 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.063 0.937 9 C -0.113 4.113 10 S 0.111 5.889 11 C -0.238 4.238 12 C -0.156 4.156 13 C -0.133 4.133 14 C -0.128 4.128 15 C -0.146 4.146 16 C 0.048 3.952 17 N -0.300 5.300 18 C 0.305 3.695 19 O -0.413 6.413 20 C -0.036 4.036 21 O -0.222 6.222 22 C 0.063 3.937 23 C -0.199 4.199 24 C -0.131 4.131 25 C 0.021 3.979 26 F -0.129 7.129 27 C -0.130 4.130 28 C -0.148 4.148 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.262 0.738 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.182 0.818 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.390 -18.769 -0.701 25.596 hybrid contribution -0.380 1.634 -0.174 1.687 sum 17.010 -17.135 -0.875 24.160 Atomic orbital electron populations 1.69989 1.08131 1.28829 1.50289 1.25800 0.95604 1.02964 0.93231 0.85748 0.79669 0.78219 0.79723 1.18487 1.20392 1.16790 1.20568 0.88838 0.94192 1.53418 0.93661 1.21493 0.98585 0.91018 1.00244 1.84876 0.95626 1.16723 1.91692 1.21832 0.97416 0.95968 1.08614 1.21273 0.97033 0.95011 1.02330 1.21357 0.91942 1.00485 0.99539 1.21389 1.01327 0.91011 0.99072 1.21408 0.92411 0.99581 1.01246 1.17289 0.92209 0.82727 1.02926 1.43331 1.20474 1.05074 1.61088 1.20684 0.84810 0.86920 0.77127 1.90701 1.22934 1.85509 1.42121 1.22621 0.93541 0.84492 1.02914 1.86116 1.45696 1.14080 1.76283 1.19250 0.94541 0.82826 0.97100 1.21422 0.96963 0.97262 1.04210 1.21215 1.00524 0.92012 0.99366 1.17875 0.96763 0.78232 1.05002 1.91479 1.92547 1.33722 1.95112 1.21158 0.95842 0.96380 0.99592 1.20481 1.01129 0.90611 1.02551 0.91741 0.93565 0.93398 0.85928 0.82957 0.82611 0.83789 0.73802 0.85611 0.84854 0.81800 0.82525 0.82213 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 2 C 0.03 1.38 5.47 84.66 0.46 1.84 16 3 Si 0.94 40.63 27.47 68.60 1.88 42.52 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.53 -29.01 9.68 25.60 0.25 -28.76 16 8 H 0.05 2.75 7.96 -2.91 -0.02 2.73 16 9 C 0.03 1.54 3.16 71.24 0.23 1.77 16 10 S -0.13 -5.08 20.55 -56.49 -1.16 -6.24 16 11 C -0.12 -4.07 6.12 22.71 0.14 -3.93 16 12 C -0.13 -4.08 9.36 22.39 0.21 -3.87 16 13 C -0.11 -2.77 10.04 22.27 0.22 -2.55 16 14 C -0.11 -2.49 10.04 22.29 0.22 -2.27 16 15 C -0.12 -3.43 8.71 22.37 0.19 -3.23 16 16 C 0.15 4.41 6.44 38.22 0.25 4.66 16 17 N -0.65 -15.85 5.17 -303.02 -1.57 -17.42 16 18 C 0.52 12.03 7.71 87.66 0.68 12.71 16 19 O -0.54 -16.51 13.67 15.95 0.22 -16.29 16 20 C 0.04 0.62 5.22 71.23 0.37 0.99 16 21 O -0.31 -6.09 9.67 -73.94 -0.71 -6.81 16 22 C 0.11 1.78 6.69 22.49 0.15 1.93 16 23 C -0.18 -2.27 9.04 22.36 0.20 -2.07 16 24 C -0.11 -1.48 10.02 22.30 0.22 -1.25 16 25 C 0.04 0.63 7.30 22.37 0.16 0.80 16 26 F -0.15 -2.65 17.27 44.97 0.78 -1.88 16 27 C -0.11 -1.53 10.02 22.30 0.22 -1.31 16 28 C -0.13 -1.98 9.99 22.36 0.22 -1.75 16 29 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.05 2.03 6.81 -2.39 -0.02 2.01 16 31 H 0.05 2.04 7.18 -2.39 -0.02 2.02 16 32 H 0.12 3.91 5.88 -2.91 -0.02 3.90 16 33 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.14 4.00 5.80 -2.91 -0.02 3.99 16 36 H 0.42 8.82 7.65 -92.71 -0.71 8.11 16 37 H 0.13 1.25 7.65 -2.39 -0.02 1.23 16 38 H 0.13 1.08 7.67 -2.38 -0.02 1.06 16 39 H 0.16 1.16 6.30 -2.91 -0.02 1.14 16 40 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.36 375.00 4.46 -66.89 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.32 Total: 20.51 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 4.41 Total: -26.31 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.27 Total: -72.39 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.50 Total: -23.10 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.88 Total: 42.52 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.16 Total: -6.24 kcal Total: -71.36 4.46 -66.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.125 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds