Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46790 * 2 1 4 4 C 1.52998 * 109.46817 * 119.99624 * 2 1 3 5 5 C 1.50704 * 109.46978 * 175.00356 * 4 2 1 6 6 C 1.35263 * 119.50402 * 94.99869 * 5 4 2 7 7 C 1.41145 * 119.87368 * 179.72204 * 6 5 4 8 8 C 1.48452 * 120.54020 * 180.02562 * 7 6 5 9 9 O 1.21476 * 120.00224 * 179.97438 * 8 7 6 10 10 N 1.34781 * 120.00205 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00187 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47147 * 179.97438 * 11 10 8 13 13 C 1.53039 * 109.46063 * 295.03175 * 12 11 10 14 14 C 1.53195 * 109.30941 * 178.59837 * 13 12 11 15 15 N 1.46922 * 108.76467 * 54.65613 * 14 13 12 16 16 C 1.36937 * 120.63300 * 126.40742 * 15 14 13 17 17 H 1.08001 * 119.99653 * 331.82330 * 16 15 14 18 18 C 1.38811 * 120.00345 * 151.82236 * 16 15 14 19 19 N 1.31624 * 119.99893 * 343.07589 * 18 16 15 20 20 Si 1.86800 * 120.00016 * 163.06964 * 18 16 15 21 21 H 1.48507 * 109.46941 * 90.00564 * 20 18 16 22 22 H 1.48504 * 109.47029 * 209.99986 * 20 18 16 23 23 H 1.48496 * 109.47307 * 330.00302 * 20 18 16 24 24 C 1.46929 * 118.74096 * 306.37862 * 15 14 13 25 25 C 1.53040 * 109.46150 * 174.97282 * 12 11 10 26 26 C 1.38302 * 118.92045 * 359.97438 * 7 6 5 27 27 C 1.40958 * 119.01481 * 0.02562 * 26 7 6 28 28 O 1.22009 * 119.95838 * 179.97438 * 27 26 7 29 29 N 1.34595 * 120.07448 * 359.97438 * 27 26 7 30 30 H 0.96997 * 119.44376 * 180.02562 * 29 27 26 31 31 H 1.08997 * 109.47393 * 300.00274 * 1 2 3 32 32 H 1.09004 * 109.46971 * 60.00396 * 1 2 3 33 33 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47393 * 239.99726 * 2 1 3 35 35 H 1.08996 * 109.46905 * 299.99838 * 3 2 1 36 36 H 1.09003 * 109.46983 * 59.99914 * 3 2 1 37 37 H 1.09006 * 109.46441 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.47253 * 55.00452 * 4 2 1 39 39 H 1.08992 * 109.47454 * 295.00140 * 4 2 1 40 40 H 1.07997 * 120.06127 * 359.74595 * 6 5 4 41 41 H 0.97002 * 119.99419 * 359.97438 * 10 8 7 42 42 H 1.08994 * 109.46950 * 300.00160 * 11 10 8 43 43 H 1.09000 * 109.47009 * 60.00042 * 11 10 8 44 44 H 1.09007 * 109.45808 * 55.00322 * 12 11 10 45 45 H 1.08996 * 109.49663 * 298.56244 * 13 12 11 46 46 H 1.09003 * 109.50103 * 58.66229 * 13 12 11 47 47 H 1.09000 * 109.60133 * 294.86212 * 14 13 12 48 48 H 1.09003 * 109.70074 * 174.50493 * 14 13 12 49 49 H 0.97004 * 119.99519 * 180.02562 * 19 18 16 50 50 H 1.08998 * 109.58709 * 293.82689 * 24 15 14 51 51 H 1.08994 * 109.70525 * 173.46751 * 24 15 14 52 52 H 1.09004 * 109.49721 * 301.33818 * 25 12 11 53 53 H 1.08997 * 109.49395 * 61.40384 * 25 12 11 54 54 H 1.07998 * 120.48973 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.3022 0.1031 1.8073 7 6 5.7095 0.0062 1.7608 8 6 6.5582 1.0209 2.4345 9 8 7.7685 0.9277 2.3887 10 7 5.9859 2.0450 3.0980 11 6 6.8234 3.0460 3.7634 12 6 5.9315 4.0914 4.4362 13 6 5.1519 4.8605 3.3672 14 6 4.2343 5.8821 4.0462 15 7 5.0446 6.7314 4.9299 16 6 5.0010 8.0955 4.8189 17 1 4.7714 8.5528 3.8677 18 6 5.2519 8.8906 5.9287 19 7 5.2018 8.3696 7.1364 20 14 5.6609 10.6999 5.7082 21 1 4.4080 11.4968 5.7302 22 1 6.5497 11.1445 6.8117 23 1 6.3500 10.8968 4.4076 24 6 5.9021 6.0892 5.9354 25 6 6.8008 5.0651 5.2352 26 6 6.2850 -1.0501 1.0782 27 6 5.4487 -1.9954 0.4506 28 8 5.9381 -2.9337 -0.1566 29 7 4.1110 -1.8640 0.5204 30 1 3.5441 -2.5200 0.0855 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6053 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1369 40 1 3.8333 0.9199 2.3358 41 1 5.0194 2.1192 3.1350 42 1 7.4437 2.5588 4.5156 43 1 7.4616 3.5336 3.0265 44 1 5.2321 3.5937 5.1081 45 1 5.8502 5.3787 2.7100 46 1 4.5508 4.1635 2.7832 47 1 3.4779 5.3609 4.6331 48 1 3.7489 6.4995 3.2904 49 1 5.3768 8.9254 7.9119 50 1 5.2818 5.5849 6.6763 51 1 6.5192 6.8415 6.4265 52 1 7.3735 4.5136 5.9810 53 1 7.4838 5.5808 4.5603 54 1 7.3592 -1.1491 1.0268 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095992090.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = -69.856576 kcal Electronic energy + Delta-G solvation = -32679.587036 eV Core-core repulsion = 28422.173429 eV Total energy + Delta-G solvation = -4257.413607 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.52180 -40.85380 -39.32987 -38.83071 -36.64723 -36.47025 -34.93055 -34.34094 -32.49556 -31.60600 -31.35863 -28.83348 -28.05905 -27.65384 -26.48089 -25.19446 -23.79233 -23.62522 -22.59310 -21.79836 -21.11798 -20.63624 -19.44979 -18.85507 -18.47464 -18.37982 -16.97557 -16.85967 -16.77180 -16.67901 -16.29853 -15.91105 -15.69167 -15.31484 -15.26239 -15.09574 -15.00771 -14.91917 -14.70086 -14.23141 -14.00234 -13.84493 -13.54459 -13.43703 -13.27703 -13.06653 -12.96650 -12.92053 -12.80327 -12.58761 -12.53108 -12.24191 -12.00429 -11.90713 -11.79936 -11.70959 -11.65475 -11.57261 -11.51020 -11.46426 -11.23459 -11.07512 -10.96245 -10.50105 -10.15884 -9.09405 -8.62394 -7.84791 -5.28678 -0.70892 0.53026 1.46712 1.49462 1.57998 1.68665 1.77596 1.96260 2.53318 2.57832 3.26437 3.30139 3.44403 3.73178 3.75862 3.85707 3.95134 3.97876 4.01438 4.03231 4.11762 4.13949 4.37964 4.48476 4.55242 4.59203 4.73429 4.73915 4.76694 4.82391 4.87262 4.92831 4.97134 4.98154 5.02169 5.05069 5.07541 5.13276 5.16508 5.17596 5.30149 5.33765 5.36863 5.37346 5.48268 5.51640 5.54261 5.59190 5.60268 5.69943 5.80423 5.83915 6.42024 6.43576 6.82644 7.05596 7.19442 7.92824 8.42263 9.21137 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.002121 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.066660 B =13198.547750 C =14905.226465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.162 4.162 4 C -0.087 4.087 5 C 0.195 3.805 6 C -0.217 4.217 7 C -0.008 4.008 8 C 0.549 3.451 9 O -0.570 6.570 10 N -0.695 5.695 11 C 0.133 3.867 12 C -0.077 4.077 13 C -0.116 4.116 14 C 0.140 3.860 15 N -0.612 5.612 16 C -0.259 4.259 17 H 0.064 0.936 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.961 3.039 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.273 1.273 24 C 0.177 3.823 25 C -0.124 4.124 26 C -0.214 4.214 27 C 0.517 3.483 28 O -0.595 6.595 29 N -0.581 5.581 30 H 0.428 0.572 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.179 0.821 41 H 0.417 0.583 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.022 0.978 48 H 0.051 0.949 49 H 0.249 0.751 50 H 0.001 0.999 51 H 0.048 0.952 52 H 0.068 0.932 53 H 0.048 0.952 54 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.945 -20.416 -12.260 26.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.219 4.219 4 C -0.124 4.124 5 C 0.085 3.915 6 C -0.239 4.239 7 C -0.015 4.015 8 C 0.336 3.664 9 O -0.450 6.450 10 N -0.348 5.348 11 C 0.009 3.991 12 C -0.096 4.096 13 C -0.154 4.154 14 C 0.015 3.985 15 N -0.336 5.336 16 C -0.389 4.389 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.789 3.211 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.051 3.949 25 C -0.163 4.163 26 C -0.237 4.237 27 C 0.319 3.681 28 O -0.481 6.481 29 N -0.213 5.213 30 H 0.269 0.731 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.142 0.858 40 H 0.196 0.804 41 H 0.256 0.744 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.019 0.981 51 H 0.067 0.933 52 H 0.087 0.913 53 H 0.067 0.933 54 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.673 -20.828 -12.439 26.504 hybrid contribution 0.137 1.095 0.107 1.109 sum -10.537 -19.733 -12.332 25.544 Atomic orbital electron populations 1.21835 0.93553 1.02567 1.02530 1.21078 0.96738 0.96290 0.96671 1.22032 1.01149 0.95917 1.02819 1.21256 0.84694 1.04850 1.01628 1.20863 0.97052 0.85390 0.88241 1.20743 0.90217 1.03822 1.09121 1.20393 0.94702 0.92834 0.93575 1.18608 0.87217 0.81795 0.78830 1.90782 1.15987 1.76356 1.61864 1.45795 1.11577 1.24914 1.52477 1.21392 0.93160 0.88347 0.96180 1.21155 0.97037 0.94339 0.97091 1.21957 0.98713 0.97779 0.96998 1.21083 0.92415 0.92360 0.92629 1.44329 1.47814 1.01787 1.39680 1.19475 1.42882 0.83066 0.93509 0.91829 1.25728 1.02413 1.01527 0.94960 1.70167 1.53960 1.36480 0.97421 0.85383 0.77657 0.81028 0.77024 1.21101 1.22096 1.19814 1.20554 0.91495 0.93160 0.89646 1.21985 0.98048 0.97076 0.99204 1.22462 1.01384 0.96311 1.03543 1.16926 0.82147 0.86649 0.82377 1.90987 1.74108 1.35642 1.47374 1.43429 1.08265 1.24818 1.44748 0.73146 0.91653 0.92809 0.91670 0.91393 0.93018 0.90963 0.92933 0.87259 0.85803 0.80422 0.74362 0.91493 0.92220 0.89838 0.93325 0.89156 0.95957 0.93078 0.94225 0.98129 0.93339 0.91332 0.93314 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.19 71.98 0.66 0.26 16 2 C -0.09 -0.29 2.91 -10.79 -0.03 -0.32 16 3 C -0.16 -0.99 8.82 71.98 0.64 -0.36 16 4 C -0.09 -0.07 4.91 29.85 0.15 0.07 16 5 C 0.20 1.41 5.51 41.27 0.23 1.64 16 6 C -0.22 -2.14 7.70 22.30 0.17 -1.96 16 7 C -0.01 -0.15 5.91 -19.83 -0.12 -0.26 16 8 C 0.55 12.84 7.80 86.97 0.68 13.52 16 9 O -0.57 -18.61 16.39 -3.64 -0.06 -18.67 16 10 N -0.70 -12.91 5.23 -465.39 -2.43 -15.35 16 11 C 0.13 3.10 5.06 86.38 0.44 3.54 16 12 C -0.08 -2.00 2.19 -10.77 -0.02 -2.03 16 13 C -0.12 -3.08 5.25 30.67 0.16 -2.92 16 14 C 0.14 5.05 6.52 86.36 0.56 5.61 16 15 N -0.61 -28.91 2.99 -699.10 -2.09 -31.00 16 16 C -0.26 -13.80 9.58 84.03 0.81 -12.99 16 17 H 0.06 3.32 7.89 -2.91 -0.02 3.29 16 18 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 19 N -0.93 -54.12 11.19 21.65 0.24 -53.88 16 20 Si 0.96 44.19 29.59 68.60 2.03 46.22 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 C 0.18 8.05 5.30 86.36 0.46 8.50 16 25 C -0.12 -4.19 5.36 30.67 0.16 -4.03 16 26 C -0.21 -4.94 9.61 22.95 0.22 -4.72 16 27 C 0.52 11.37 7.70 84.94 0.65 12.02 16 28 O -0.59 -18.13 17.93 -5.34 -0.10 -18.22 16 29 N -0.58 -6.69 5.22 -307.51 -1.61 -8.30 16 30 H 0.43 2.87 8.75 -92.71 -0.81 2.06 16 31 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 34 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 36 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.05 0.42 6.50 -2.38 -0.02 0.40 16 38 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.12 -0.24 8.01 -2.39 -0.02 -0.26 16 40 H 0.18 0.68 6.47 -2.91 -0.02 0.66 16 41 H 0.42 4.95 5.76 -92.71 -0.53 4.41 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 1.65 7.15 -2.39 -0.02 1.63 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 49 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.05 2.57 6.06 -2.39 -0.01 2.56 16 52 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 53 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 54 H 0.14 3.79 7.69 -2.91 -0.02 3.77 16 Total: -1.00 -78.40 426.77 1.78 -76.62 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -0.44 Total: 9.37 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.23 Total: 13.20 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -5.89 Total: -108.52 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.16 Total: -36.89 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -78.40 1.78 -76.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095992090.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.767 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds