Wall clock time and date at job start Tue Mar 31 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47189 * 110.99979 * 2 1 4 4 C 1.52963 * 108.73712 * 167.60776 * 3 2 1 5 5 N 1.46005 * 110.05975 * 50.19828 * 4 3 2 6 6 C 1.37101 * 118.52839 * 161.92158 * 5 4 3 7 7 H 1.08003 * 119.99646 * 201.36308 * 6 5 4 8 8 C 1.38948 * 120.00267 * 21.35440 * 6 5 4 9 9 N 1.31412 * 119.99596 * 16.35297 * 8 6 5 10 10 Si 1.86794 * 120.00286 * 196.35003 * 8 6 5 11 11 H 1.48496 * 109.47088 * 90.00325 * 10 8 6 12 12 H 1.48497 * 109.47337 * 209.99919 * 10 8 6 13 13 H 1.48495 * 109.47223 * 330.00197 * 10 8 6 14 14 C 1.33707 * 122.94685 * 341.93382 * 5 4 3 15 15 O 1.21287 * 118.63134 * 181.68894 * 14 5 4 16 16 C 1.46922 * 111.00183 * 237.12799 * 2 1 3 17 17 C 1.53156 * 109.33256 * 53.51333 * 16 2 1 18 18 C 1.53032 * 109.24904 * 182.65035 * 17 16 2 19 19 N 1.46842 * 109.52396 * 59.23619 * 18 17 16 20 20 C 1.46894 * 111.00387 * 174.19146 * 19 18 17 21 21 C 1.50702 * 109.47032 * 294.24034 * 20 19 18 22 22 C 1.38251 * 119.97447 * 269.72519 * 21 20 19 23 23 C 1.38190 * 120.02368 * 179.76596 * 22 21 20 24 24 C 1.38456 * 119.97980 * 0.50581 * 23 22 21 25 25 F 1.35096 * 120.03174 * 179.76632 * 24 23 22 26 26 C 1.38462 * 119.94520 * 359.74662 * 24 23 22 27 27 C 1.38201 * 119.97676 * 0.02562 * 26 24 23 28 28 C 1.46848 * 111.22060 * 298.30361 * 19 18 17 29 29 C 1.53049 * 109.52854 * 61.68869 * 28 19 18 30 30 H 1.09002 * 109.47059 * 182.87147 * 1 2 3 31 31 H 1.09001 * 109.46777 * 62.87176 * 1 2 3 32 32 H 1.09000 * 109.47107 * 302.87356 * 1 2 3 33 33 H 1.09010 * 109.59080 * 287.36435 * 3 2 1 34 34 H 1.08998 * 109.59772 * 47.81619 * 3 2 1 35 35 H 1.09000 * 109.35881 * 290.02217 * 4 3 2 36 36 H 1.09003 * 109.38005 * 170.38528 * 4 3 2 37 37 H 0.97003 * 119.99786 * 180.02562 * 9 8 6 38 38 H 1.09003 * 109.51266 * 302.58283 * 17 16 2 39 39 H 1.09004 * 109.50810 * 62.71937 * 17 16 2 40 40 H 1.08998 * 109.46505 * 299.22057 * 18 17 16 41 41 H 1.09003 * 109.46610 * 179.24965 * 18 17 16 42 42 H 1.09005 * 109.47245 * 54.23615 * 20 19 18 43 43 H 1.09001 * 109.47674 * 174.24076 * 20 19 18 44 44 H 1.08003 * 119.98345 * 0.02562 * 22 21 20 45 45 H 1.08011 * 120.01111 * 180.25672 * 23 22 21 46 46 H 1.08002 * 120.01334 * 179.97438 * 26 24 23 47 47 H 1.07993 * 119.99033 * 180.02562 * 27 26 24 48 48 H 1.08999 * 109.46110 * 301.67299 * 28 19 18 49 49 H 1.08997 * 109.45526 * 181.69970 * 28 19 18 50 50 H 1.08992 * 109.50850 * 180.84929 * 29 28 19 51 51 H 1.08997 * 109.53920 * 60.73374 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9965 1.3741 0.0000 4 6 3.4935 1.3258 0.3109 5 7 4.1539 0.3541 -0.5559 6 6 5.5152 0.4259 -0.7022 7 1 5.9900 -0.0206 -1.5634 8 6 6.2839 1.0732 0.2573 9 7 5.7759 1.3314 1.4415 10 14 8.0393 1.5762 -0.1358 11 1 8.0453 2.9470 -0.7068 12 1 8.8508 1.5545 1.1077 13 1 8.6174 0.6271 -1.1207 14 6 3.4906 -0.6025 -1.2137 15 8 4.1216 -1.3882 -1.8887 16 6 1.9956 -0.7445 -1.1520 17 6 1.3751 -0.1927 -2.4389 18 6 1.8738 -1.0121 -3.6312 19 7 1.4978 -2.4200 -3.4507 20 6 1.8389 -3.2127 -4.6395 21 6 0.9987 -2.7575 -5.8048 22 6 -0.2243 -3.3539 -6.0493 23 6 -0.9977 -2.9340 -7.1147 24 6 -0.5428 -1.9227 -7.9438 25 9 -1.2959 -1.5146 -8.9884 26 6 0.6846 -1.3296 -7.7011 27 6 1.4544 -1.7480 -6.6322 28 6 2.1177 -2.9855 -2.2456 29 6 1.6263 -2.2242 -1.0122 30 1 -0.3633 -1.0264 0.0515 31 1 -0.3633 0.4686 -0.9146 32 1 -0.3633 0.5578 0.8631 33 1 1.8414 1.8252 -0.9802 34 1 1.4838 1.9625 0.7609 35 1 3.6371 1.0379 1.3523 36 1 3.9290 2.3115 0.1467 37 1 6.3124 1.7836 2.1113 38 1 0.2889 -0.2622 -2.3783 39 1 1.6672 0.8498 -2.5660 40 1 2.9587 -0.9318 -3.6988 41 1 1.4238 -0.6307 -4.5478 42 1 2.8939 -3.0759 -4.8769 43 1 1.6447 -4.2668 -4.4414 44 1 -0.5772 -4.1454 -5.4048 45 1 -1.9551 -3.3973 -7.3030 46 1 1.0408 -0.5410 -8.3473 47 1 2.4115 -1.2853 -6.4424 48 1 3.2016 -2.8969 -2.3191 49 1 1.8446 -4.0369 -2.1560 50 1 2.0982 -2.6343 -0.1194 51 1 0.5440 -2.3231 -0.9300 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096050087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:01 Heat of formation + Delta-G solvation = -26.497302 kcal Electronic energy + Delta-G solvation = -34305.497568 eV Core-core repulsion = 29926.503855 eV Total energy + Delta-G solvation = -4378.993713 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.191 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.88329 -42.16865 -40.31972 -38.77311 -38.04372 -36.54317 -33.96598 -33.16547 -32.19368 -31.78933 -31.32769 -30.23119 -28.03228 -26.54454 -25.95524 -24.57902 -23.99235 -23.62457 -22.96115 -22.15936 -21.57567 -19.54015 -18.61176 -18.54846 -17.86101 -17.30937 -17.21209 -16.85253 -16.63453 -16.56704 -16.49679 -16.07384 -15.63439 -15.53198 -15.26255 -15.23132 -14.76074 -14.68532 -14.49438 -14.35664 -14.16644 -13.96481 -13.68139 -13.46936 -13.25244 -13.18150 -12.97247 -12.88058 -12.85542 -12.54124 -12.51046 -12.27862 -12.24939 -12.19007 -11.97209 -11.87360 -11.85190 -11.60532 -11.42265 -10.98283 -10.10598 -10.02374 -9.64180 -9.56962 -9.21829 -9.00207 -8.27249 -5.97717 0.14282 0.30302 1.34668 1.38449 1.50405 2.05114 2.26073 2.53348 2.84813 3.07662 3.09872 3.21364 3.30361 3.68821 3.74590 3.79744 3.87510 3.94753 3.99871 4.12344 4.22632 4.27867 4.34187 4.36363 4.46465 4.49133 4.52260 4.63050 4.66823 4.71874 4.73990 4.76837 4.83894 4.88984 4.96784 5.00060 5.04827 5.07213 5.08778 5.15281 5.17462 5.20807 5.28508 5.42414 5.49920 5.57324 5.60799 5.93627 5.97406 6.08747 6.14757 6.15648 6.20296 6.51122 7.19468 7.57769 8.09813 8.68464 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.002813 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.062720 B = 9952.277336 C =10776.729376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.037 3.963 4 C 0.147 3.853 5 N -0.450 5.450 6 C -0.346 4.346 7 H 0.071 0.929 8 C -0.001 4.001 9 N -0.893 5.893 10 Si 0.986 3.014 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.277 1.277 14 C 0.452 3.548 15 O -0.616 6.616 16 C 0.113 3.887 17 C -0.124 4.124 18 C 0.061 3.939 19 N -0.514 5.514 20 C 0.094 3.906 21 C -0.085 4.085 22 C -0.067 4.067 23 C -0.151 4.151 24 C 0.077 3.923 25 F -0.150 7.150 26 C -0.158 4.158 27 C -0.095 4.095 28 C 0.036 3.964 29 C -0.075 4.075 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.272 0.728 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.102 0.898 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.143 0.857 47 H 0.125 0.875 48 H 0.054 0.946 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.776 -4.532 -10.059 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.091 4.091 4 C 0.024 3.976 5 N -0.167 5.167 6 C -0.474 4.474 7 H 0.089 0.911 8 C -0.203 4.203 9 N -0.531 5.531 10 Si 0.809 3.191 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.202 1.202 14 C 0.241 3.759 15 O -0.504 6.504 16 C 0.020 3.980 17 C -0.164 4.164 18 C -0.067 4.067 19 N -0.239 5.239 20 C -0.034 4.034 21 C -0.086 4.086 22 C -0.085 4.085 23 C -0.170 4.170 24 C 0.058 3.942 25 F -0.128 7.128 26 C -0.176 4.176 27 C -0.114 4.114 28 C -0.091 4.091 29 C -0.114 4.114 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.100 0.900 42 H 0.046 0.954 43 H 0.120 0.880 44 H 0.172 0.828 45 H 0.173 0.827 46 H 0.161 0.839 47 H 0.143 0.857 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.070 0.930 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.778 -5.019 -9.665 19.172 hybrid contribution 1.993 1.131 -0.872 2.452 sum -13.785 -3.888 -10.537 17.781 Atomic orbital electron populations 1.22589 0.85068 1.03430 1.01675 1.62646 1.09985 1.13469 1.40328 1.22685 0.94896 0.90159 1.01336 1.21255 0.89674 0.91389 0.95312 1.43484 1.06635 1.26197 1.40350 1.19608 0.83079 1.37456 1.07293 0.91061 1.26038 1.03509 0.97023 0.93747 1.70100 1.39157 1.40447 1.03427 0.85051 0.77415 0.78780 0.77808 1.19125 1.19916 1.20188 1.20212 0.90178 0.81572 0.83915 1.90328 1.69254 1.44069 1.46731 1.21052 0.89917 0.96773 0.90234 1.22054 1.02029 0.98311 0.93976 1.21981 0.97623 0.89235 0.97896 1.62136 1.58085 1.01442 1.02188 1.21024 0.95722 0.98732 0.87893 1.19879 0.96133 0.96696 0.95867 1.21097 0.92226 0.99363 0.95864 1.21375 1.02297 0.97490 0.95811 1.17932 0.91042 0.97898 0.87340 1.91469 1.75690 1.89838 1.55830 1.21230 0.94031 1.02357 1.00026 1.21045 0.99887 0.96404 0.94018 1.22474 0.99586 0.98072 0.88992 1.21324 1.01907 0.90863 0.97257 0.90092 0.94151 0.89790 0.94314 0.87023 0.91481 0.93383 0.91807 0.88098 0.92830 0.96602 0.90048 0.95378 0.87953 0.82753 0.82721 0.83912 0.85714 0.92783 0.89590 0.93006 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.74 127.69 1.12 1.57 16 2 N -0.54 -17.96 4.69 -876.22 -4.11 -22.07 16 3 C 0.04 1.29 5.49 86.24 0.47 1.76 16 4 C 0.15 6.77 4.93 86.46 0.43 7.20 16 5 N -0.45 -23.70 2.98 -638.80 -1.90 -25.60 16 6 C -0.35 -19.99 9.13 84.04 0.77 -19.22 16 7 H 0.07 4.41 7.25 -2.91 -0.02 4.38 16 8 C 0.00 -0.07 5.04 84.93 0.43 0.36 16 9 N -0.89 -48.18 10.57 21.66 0.23 -47.95 16 10 Si 0.99 43.11 29.58 68.60 2.03 45.14 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.45 22.08 6.02 87.70 0.53 22.60 16 15 O -0.62 -33.32 11.02 -3.05 -0.03 -33.35 16 16 C 0.11 4.13 0.44 2.75 0.00 4.14 16 17 C -0.12 -3.93 4.13 30.66 0.13 -3.80 16 18 C 0.06 1.97 4.90 86.32 0.42 2.39 16 19 N -0.51 -14.54 4.65 -900.94 -4.19 -18.72 16 20 C 0.09 2.27 5.12 85.56 0.44 2.71 16 21 C -0.09 -1.82 4.89 -19.86 -0.10 -1.92 16 22 C -0.07 -1.18 9.70 22.26 0.22 -0.96 16 23 C -0.15 -2.61 10.03 22.31 0.22 -2.39 16 24 C 0.08 1.58 7.30 22.38 0.16 1.75 16 25 F -0.15 -3.26 17.27 44.97 0.78 -2.49 16 26 C -0.16 -3.24 10.03 22.31 0.22 -3.01 16 27 C -0.09 -2.09 7.87 22.26 0.18 -1.91 16 28 C 0.04 1.17 5.19 86.33 0.45 1.62 16 29 C -0.08 -2.46 4.82 30.66 0.15 -2.31 16 30 H 0.08 1.72 6.40 -2.39 -0.02 1.71 16 31 H 0.04 0.86 6.14 -2.39 -0.01 0.85 16 32 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 33 H 0.04 1.29 6.27 -2.38 -0.01 1.28 16 34 H 0.11 3.13 8.00 -2.39 -0.02 3.11 16 35 H 0.07 3.41 6.80 -2.39 -0.02 3.40 16 36 H 0.05 2.30 7.63 -2.39 -0.02 2.28 16 37 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 38 H 0.10 2.69 6.16 -2.39 -0.01 2.68 16 39 H 0.05 1.79 6.56 -2.38 -0.02 1.78 16 40 H 0.02 0.65 6.21 -2.39 -0.01 0.63 16 41 H 0.08 2.34 5.75 -2.39 -0.01 2.33 16 42 H 0.03 0.79 8.07 -2.38 -0.02 0.77 16 43 H 0.10 2.05 7.93 -2.39 -0.02 2.03 16 44 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.16 1.94 8.06 -2.90 -0.02 1.92 16 46 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 47 H 0.12 2.84 7.95 -2.91 -0.02 2.81 16 48 H 0.05 2.27 5.04 -2.40 -0.01 2.26 16 49 H 0.09 2.30 8.02 -2.39 -0.02 2.28 16 50 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.10 2.56 6.42 -2.39 -0.02 2.55 16 Total: -1.00 -67.22 381.15 -0.01 -67.23 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.96 Total: 27.25 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.23 Total: 10.56 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -9.97 Total: -114.34 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.03 Total: -33.35 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.22 -0.01 -67.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.735 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds