Wall clock time and date at job start Tue Mar 31 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 N 1.46495 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00228 * 265.55961 * 4 3 2 6 6 H 1.07994 * 120.00461 * 145.67075 * 5 4 3 7 7 C 1.38949 * 119.99705 * 325.67604 * 5 4 3 8 8 N 1.31416 * 120.00150 * 338.40084 * 7 5 4 9 9 Si 1.86803 * 120.00043 * 158.40984 * 7 5 4 10 10 H 1.48503 * 109.47006 * 89.99680 * 9 7 5 11 11 H 1.48501 * 109.47112 * 209.99674 * 9 7 5 12 12 H 1.48495 * 109.46897 * 329.99767 * 9 7 5 13 13 C 1.34778 * 119.99964 * 85.56195 * 4 3 2 14 14 O 1.21288 * 119.99942 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99937 * 179.97438 * 13 4 3 16 16 C 1.50703 * 109.47210 * 179.97438 * 15 13 4 17 17 C 1.38235 * 119.99216 * 90.00168 * 16 15 13 18 18 C 1.38240 * 119.99718 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99693 * 359.97438 * 18 17 16 20 20 S 1.76205 * 119.99679 * 179.97438 * 19 18 17 21 21 O 1.42104 * 104.27541 * 206.07334 * 20 19 18 22 22 O 1.42095 * 104.27885 * 333.92921 * 20 19 18 23 23 C 1.81394 * 104.44978 * 90.00295 * 20 19 18 24 24 F 1.39902 * 109.47134 * 299.99639 * 23 20 19 25 25 F 1.39897 * 109.47215 * 59.99694 * 23 20 19 26 26 C 1.38229 * 120.00297 * 0.25680 * 19 18 17 27 27 C 1.38233 * 120.00509 * 270.02663 * 16 15 13 28 28 H 1.09005 * 109.47358 * 60.00607 * 1 2 3 29 29 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47698 * 300.00049 * 1 2 3 31 31 H 1.08997 * 109.47471 * 240.00447 * 2 1 3 32 32 H 1.08996 * 109.46817 * 119.99234 * 2 1 3 33 33 H 1.08996 * 109.47018 * 59.99534 * 3 2 1 34 34 H 1.09003 * 109.47120 * 300.00053 * 3 2 1 35 35 H 0.96996 * 120.00054 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47320 * 59.99972 * 15 13 4 37 37 H 1.08996 * 109.47280 * 300.00228 * 15 13 4 38 38 H 1.08002 * 120.00617 * 359.97438 * 17 16 15 39 39 H 1.07992 * 120.00198 * 179.97438 * 18 17 16 40 40 H 1.09001 * 109.47328 * 179.97438 * 23 20 19 41 41 H 1.08003 * 120.00197 * 179.72617 * 26 19 18 42 42 H 1.08004 * 119.99753 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5348 1.1846 6 1 5.1288 1.0153 1.3072 7 6 3.6762 2.2965 2.2270 8 7 2.8015 3.2452 1.9785 9 14 4.2290 1.9720 3.9816 10 1 5.4187 2.8064 4.2880 11 1 3.1292 2.3150 4.9186 12 1 4.5788 0.5368 4.1329 13 6 4.1793 1.3522 -1.1628 14 8 3.5733 1.2702 -2.2102 15 6 5.6863 1.3528 -1.1622 16 6 6.1892 1.2419 -2.5785 17 6 6.4194 2.3846 -3.3215 18 6 6.8803 2.2830 -4.6209 19 6 7.1114 1.0387 -5.1768 20 16 7.6982 0.9092 -6.8333 21 8 7.2452 -0.3660 -7.2668 22 8 7.2433 2.1003 -7.4604 23 6 9.5053 0.9229 -6.6757 24 9 9.9115 2.1167 -6.0696 25 9 9.9132 -0.1609 -5.8908 26 6 6.8767 -0.1041 -4.4354 27 6 6.4199 -0.0024 -3.1347 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 2.4431 3.7772 2.7061 36 1 6.0498 0.5056 -0.5806 37 1 6.0490 2.2801 -0.7190 38 1 6.2385 3.3568 -2.8873 39 1 7.0598 3.1757 -5.2015 40 1 9.9569 0.8452 -7.6647 41 1 7.0531 -1.0764 -4.8713 42 1 6.2400 -0.8951 -2.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096418255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:22 Heat of formation + Delta-G solvation = -163.353197 kcal Electronic energy + Delta-G solvation = -30155.885774 eV Core-core repulsion = 25478.982249 eV Total energy + Delta-G solvation = -4676.903524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -49.62460 -47.78362 -39.56357 -38.31162 -37.67362 -36.55395 -35.22491 -33.07402 -32.51199 -31.35120 -30.95659 -28.04707 -27.83604 -25.76566 -24.45861 -22.79597 -22.17397 -20.69014 -19.93260 -19.16840 -18.74054 -18.53107 -18.05293 -17.47407 -16.93332 -16.15771 -16.08217 -15.24876 -15.09118 -14.83431 -14.69261 -14.58215 -14.45305 -14.15909 -14.04357 -13.90992 -13.85301 -13.43870 -13.21322 -13.04775 -12.67449 -12.62172 -12.52999 -12.48839 -12.01181 -11.68708 -11.60439 -11.40191 -11.27348 -11.14072 -11.01990 -10.89162 -10.71352 -10.67153 -10.45695 -10.32806 -9.79356 -9.24413 -9.07615 -8.89846 -8.46843 -7.62153 -6.48325 -4.16683 -0.87659 0.87573 1.46862 2.11497 2.99603 3.02672 3.14465 3.17468 3.20041 3.34582 3.67173 3.69048 3.79010 4.02014 4.10417 4.67913 4.81615 4.90969 4.94044 5.08873 5.40665 5.47082 5.74444 5.76896 5.78489 5.85192 5.95863 6.09419 6.15107 6.18688 6.23951 6.33373 6.48653 6.51686 6.64520 6.74372 6.78753 6.95808 7.07407 7.26909 7.42388 7.82146 8.26100 8.96329 9.40426 9.84198 10.52257 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002465 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.621152 B =11355.592381 C =12217.139621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.435 5.435 5 C -0.345 4.345 6 H 0.091 0.909 7 C 0.045 3.955 8 N -0.855 5.855 9 Si 0.912 3.088 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.470 3.530 14 O -0.599 6.599 15 C -0.099 4.099 16 C 0.026 3.974 17 C -0.127 4.127 18 C -0.013 4.013 19 C -0.668 4.668 20 S 2.477 3.523 21 O -0.893 6.893 22 O -0.893 6.893 23 C -0.213 4.213 24 F -0.164 7.164 25 F -0.165 7.165 26 C -0.014 4.014 27 C -0.130 4.130 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.271 0.729 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.068 -4.079 -10.948 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.152 5.152 5 C -0.473 4.473 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.491 5.491 9 Si 0.738 3.262 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.258 3.742 14 O -0.485 6.485 15 C -0.139 4.139 16 C 0.025 3.975 17 C -0.146 4.146 18 C -0.032 4.032 19 C -0.760 4.760 20 S 2.649 3.351 21 O -0.891 6.891 22 O -0.890 6.890 23 C -0.347 4.347 24 F -0.146 7.146 25 F -0.146 7.146 26 C -0.033 4.033 27 C -0.149 4.149 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.284 -4.018 -12.074 16.361 hybrid contribution 0.843 -0.002 1.909 2.087 sum 11.127 -4.020 -10.166 15.598 Atomic orbital electron populations 1.21654 0.96565 1.00461 1.01407 1.21827 0.94758 0.99432 1.01231 1.21478 0.81188 0.94590 1.03684 1.43468 1.04870 1.62241 1.04635 1.19426 1.07842 1.29924 0.90122 0.89173 1.25333 0.96862 0.93479 1.00442 1.69925 1.29684 1.16366 1.33091 0.86176 0.78528 0.79187 0.82271 1.20168 1.20645 1.19285 1.20034 0.88247 0.81827 0.84056 1.90575 1.70116 1.56282 1.31575 1.20673 0.95915 1.05288 0.92025 1.20099 0.88672 0.93172 0.95523 1.21168 1.00340 0.99082 0.94050 1.20819 0.92348 0.95253 0.94809 1.29554 1.22846 1.00587 1.22978 1.06812 0.75858 0.75785 0.76635 1.93644 1.74084 1.40992 1.80350 1.93646 1.73990 1.47254 1.74117 1.33132 1.26976 0.76493 0.98094 1.93093 1.92742 1.43896 1.84839 1.93089 1.92699 1.52791 1.76029 1.20796 0.92446 0.96640 0.93405 1.21125 1.00772 0.97726 0.95259 0.93129 0.93619 0.92989 0.92929 0.92407 0.87425 0.92987 0.91875 0.88708 0.87839 0.84794 0.84243 0.83228 0.84286 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.69 6.23 -26.73 -0.17 -2.86 16 3 C 0.11 2.65 4.92 -4.04 -0.02 2.63 16 4 N -0.43 -10.40 2.55 -114.82 -0.29 -10.69 16 5 C -0.35 -8.19 8.70 -14.93 -0.13 -8.32 16 6 H 0.09 2.00 6.98 -52.49 -0.37 1.63 16 7 C 0.05 1.08 4.94 -17.47 -0.09 0.99 16 8 N -0.85 -21.50 11.31 55.50 0.63 -20.87 16 9 Si 0.91 18.36 29.60 -169.99 -5.03 13.32 16 10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 C 0.47 10.79 7.60 -10.99 -0.08 10.71 16 14 O -0.60 -15.25 15.69 5.55 0.09 -15.16 16 15 C -0.10 -1.81 4.49 -29.03 -0.13 -1.94 16 16 C 0.03 0.44 4.37 -104.62 -0.46 -0.02 16 17 C -0.13 -2.00 9.70 -39.58 -0.38 -2.38 16 18 C -0.01 -0.18 9.47 -39.58 -0.37 -0.56 16 19 C -0.67 -8.85 5.65 -39.59 -0.22 -9.07 16 20 S 2.48 25.87 5.39 -107.50 -0.58 25.29 16 21 O -0.89 -11.02 17.12 -57.54 -0.98 -12.01 16 22 O -0.89 -11.12 17.13 -57.54 -0.99 -12.10 16 23 C -0.21 -1.69 5.94 101.05 0.60 -1.09 16 24 F -0.16 -1.60 17.37 2.25 0.04 -1.56 16 25 F -0.16 -1.58 17.37 2.25 0.04 -1.54 16 26 C -0.01 -0.19 9.47 -39.59 -0.37 -0.56 16 27 C -0.13 -1.97 9.70 -39.58 -0.38 -2.36 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.11 2.65 5.34 -51.93 -0.28 2.37 16 34 H 0.05 1.27 7.56 -51.93 -0.39 0.88 16 35 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.09 1.56 7.59 -51.93 -0.39 1.17 16 37 H 0.10 1.83 8.04 -51.93 -0.42 1.41 16 38 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 39 H 0.14 1.60 7.57 -52.49 -0.40 1.21 16 40 H 0.15 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.14 1.55 7.56 -52.48 -0.40 1.16 16 42 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -32.04 379.87 -8.36 -40.40 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.16 Total: 6.04 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.85 Total: -16.84 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.33 Total: -31.56 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.88 Total: -39.27 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: 25.87 SS G_CDS: -0.58 Total: 25.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.04 -8.36 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096418255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.953 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds