Wall clock time and date at job start Tue Mar 31 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46834 * 2 1 4 4 N 1.46495 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00228 * 265.55961 * 4 3 2 6 6 H 1.07994 * 120.00461 * 145.67075 * 5 4 3 7 7 C 1.38949 * 119.99705 * 325.67604 * 5 4 3 8 8 N 1.31416 * 120.00150 * 338.40084 * 7 5 4 9 9 Si 1.86803 * 120.00043 * 158.40984 * 7 5 4 10 10 H 1.48503 * 109.47006 * 89.99680 * 9 7 5 11 11 H 1.48501 * 109.47112 * 209.99674 * 9 7 5 12 12 H 1.48495 * 109.46897 * 329.99767 * 9 7 5 13 13 C 1.34778 * 119.99964 * 85.56195 * 4 3 2 14 14 O 1.21288 * 119.99942 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99937 * 179.97438 * 13 4 3 16 16 C 1.50703 * 109.47210 * 179.97438 * 15 13 4 17 17 C 1.38235 * 119.99216 * 90.00168 * 16 15 13 18 18 C 1.38240 * 119.99718 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99693 * 359.97438 * 18 17 16 20 20 S 1.76205 * 119.99679 * 179.97438 * 19 18 17 21 21 O 1.42104 * 104.27541 * 206.07334 * 20 19 18 22 22 O 1.42095 * 104.27885 * 333.92921 * 20 19 18 23 23 C 1.81394 * 104.44978 * 90.00295 * 20 19 18 24 24 F 1.39902 * 109.47134 * 299.99639 * 23 20 19 25 25 F 1.39897 * 109.47215 * 59.99694 * 23 20 19 26 26 C 1.38229 * 120.00297 * 0.25680 * 19 18 17 27 27 C 1.38233 * 120.00509 * 270.02663 * 16 15 13 28 28 H 1.09005 * 109.47358 * 60.00607 * 1 2 3 29 29 H 1.09000 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47698 * 300.00049 * 1 2 3 31 31 H 1.08997 * 109.47471 * 240.00447 * 2 1 3 32 32 H 1.08996 * 109.46817 * 119.99234 * 2 1 3 33 33 H 1.08996 * 109.47018 * 59.99534 * 3 2 1 34 34 H 1.09003 * 109.47120 * 300.00053 * 3 2 1 35 35 H 0.96996 * 120.00054 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47320 * 59.99972 * 15 13 4 37 37 H 1.08996 * 109.47280 * 300.00228 * 15 13 4 38 38 H 1.08002 * 120.00617 * 359.97438 * 17 16 15 39 39 H 1.07992 * 120.00198 * 179.97438 * 18 17 16 40 40 H 1.09001 * 109.47328 * 179.97438 * 23 20 19 41 41 H 1.08003 * 120.00197 * 179.72617 * 26 19 18 42 42 H 1.08004 * 119.99753 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5348 1.1846 6 1 5.1288 1.0153 1.3072 7 6 3.6762 2.2965 2.2270 8 7 2.8015 3.2452 1.9785 9 14 4.2290 1.9720 3.9816 10 1 5.4187 2.8064 4.2880 11 1 3.1292 2.3150 4.9186 12 1 4.5788 0.5368 4.1329 13 6 4.1793 1.3522 -1.1628 14 8 3.5733 1.2702 -2.2102 15 6 5.6863 1.3528 -1.1622 16 6 6.1892 1.2419 -2.5785 17 6 6.4194 2.3846 -3.3215 18 6 6.8803 2.2830 -4.6209 19 6 7.1114 1.0387 -5.1768 20 16 7.6982 0.9092 -6.8333 21 8 7.2452 -0.3660 -7.2668 22 8 7.2433 2.1003 -7.4604 23 6 9.5053 0.9229 -6.6757 24 9 9.9115 2.1167 -6.0696 25 9 9.9132 -0.1609 -5.8908 26 6 6.8767 -0.1041 -4.4354 27 6 6.4199 -0.0024 -3.1347 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 2.4431 3.7772 2.7061 36 1 6.0498 0.5056 -0.5806 37 1 6.0490 2.2801 -0.7190 38 1 6.2385 3.3568 -2.8873 39 1 7.0598 3.1757 -5.2015 40 1 9.9569 0.8452 -7.6647 41 1 7.0531 -1.0764 -4.8713 42 1 6.2400 -0.8951 -2.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096418255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:22 Heat of formation + Delta-G solvation = -183.009408 kcal Electronic energy + Delta-G solvation = -30156.738131 eV Core-core repulsion = 25478.982249 eV Total energy + Delta-G solvation = -4677.755881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.35198 -48.51815 -40.97844 -39.83787 -38.58793 -37.47248 -37.02613 -34.67801 -33.93439 -33.11007 -32.06989 -29.31260 -28.66320 -27.48276 -26.14632 -23.91676 -23.43483 -22.27595 -20.99658 -20.77961 -19.59934 -19.30155 -18.79823 -18.78223 -18.18888 -17.85577 -17.16906 -16.75490 -16.35085 -16.16528 -15.94596 -15.67332 -15.50996 -15.46459 -15.34185 -15.31472 -14.77400 -14.60152 -14.54111 -14.15947 -13.90877 -13.81046 -13.58997 -13.46578 -13.43014 -13.24411 -13.13956 -12.99515 -12.76945 -12.60965 -12.38462 -12.15164 -12.07969 -12.06513 -11.97375 -11.59881 -11.52715 -11.01531 -10.55175 -10.07076 -10.02383 -9.49404 -8.30754 -6.05203 -1.71744 -0.25053 0.32998 1.22430 1.42185 1.50556 1.60914 2.00726 2.12163 2.31976 2.40788 2.56090 2.80800 3.00652 3.08251 3.14905 3.30116 3.73679 3.74211 3.90880 4.14592 4.23565 4.30731 4.33091 4.40372 4.56175 4.59173 4.64436 4.78093 4.86943 4.95882 4.96577 4.99981 5.07478 5.13228 5.20296 5.35324 5.45047 5.52421 5.57344 5.83264 6.00078 6.41589 7.11760 7.57621 8.01798 8.71197 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002465 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.621152 B =11355.592381 C =12217.139621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.114 3.886 4 N -0.448 5.448 5 C -0.358 4.358 6 H 0.104 0.896 7 C 0.005 3.995 8 N -0.890 5.890 9 Si 0.981 3.019 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.458 3.542 14 O -0.631 6.631 15 C -0.087 4.087 16 C -0.002 4.002 17 C -0.145 4.145 18 C -0.020 4.020 19 C -0.679 4.679 20 S 2.503 3.497 21 O -0.913 6.913 22 O -0.915 6.915 23 C -0.194 4.194 24 F -0.171 7.171 25 F -0.170 7.170 26 C -0.019 4.019 27 C -0.141 4.141 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.027 0.973 35 H 0.272 0.728 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.160 0.840 40 H 0.210 0.790 41 H 0.164 0.836 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.989 -5.233 -11.452 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C -0.009 4.009 4 N -0.165 5.165 5 C -0.486 4.486 6 H 0.122 0.878 7 C -0.198 4.198 8 N -0.527 5.527 9 Si 0.804 3.196 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.248 3.752 14 O -0.520 6.520 15 C -0.126 4.126 16 C -0.002 4.002 17 C -0.164 4.164 18 C -0.039 4.039 19 C -0.768 4.768 20 S 2.675 3.325 21 O -0.910 6.910 22 O -0.912 6.912 23 C -0.332 4.332 24 F -0.152 7.152 25 F -0.151 7.151 26 C -0.038 4.038 27 C -0.160 4.160 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.227 0.773 41 H 0.181 0.819 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.162 -5.175 -12.541 18.220 hybrid contribution 0.311 0.383 1.929 1.991 sum 12.472 -4.792 -10.612 17.063 Atomic orbital electron populations 1.21614 0.93813 1.02336 1.01656 1.21710 0.97149 0.96892 1.00443 1.21427 0.81581 0.96289 1.01651 1.43749 1.05173 1.62307 1.05284 1.19817 1.08460 1.30133 0.90146 0.87808 1.26164 0.96815 0.92888 1.03973 1.70032 1.31082 1.17384 1.34214 0.85129 0.77914 0.79308 0.77225 1.19637 1.20947 1.18405 1.20816 0.90299 0.80812 0.83271 1.90533 1.71346 1.57533 1.32560 1.20536 0.92334 1.05907 0.93814 1.20076 0.90752 0.94353 0.95050 1.21329 1.01022 0.98945 0.95097 1.21093 0.91870 0.96591 0.94333 1.30151 1.21891 1.00116 1.24601 1.06173 0.76920 0.74707 0.74676 1.93621 1.75889 1.41566 1.79927 1.93622 1.75849 1.47917 1.73795 1.32945 1.23862 0.75853 1.00564 1.93096 1.92453 1.44439 1.85232 1.93093 1.92400 1.53121 1.76526 1.21131 0.91737 0.98014 0.92922 1.21342 1.00855 0.97525 0.96277 0.93154 0.90889 0.92495 0.94234 0.92424 0.88745 0.95465 0.91794 0.87110 0.87803 0.84810 0.82231 0.77325 0.81900 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.91 71.98 0.71 -3.77 16 2 C -0.12 -5.04 6.23 30.60 0.19 -4.85 16 3 C 0.11 5.52 4.92 86.38 0.42 5.95 16 4 N -0.45 -22.07 2.55 -635.55 -1.62 -23.69 16 5 C -0.36 -17.13 8.70 84.04 0.73 -16.39 16 6 H 0.10 4.56 6.98 -2.91 -0.02 4.54 16 7 C 0.00 0.24 4.94 84.93 0.42 0.66 16 8 N -0.89 -45.69 11.31 21.66 0.24 -45.45 16 9 Si 0.98 37.33 29.60 68.60 2.03 39.36 16 10 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 11 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 13 C 0.46 21.77 7.60 87.66 0.67 22.43 16 14 O -0.63 -33.49 15.69 -3.05 -0.05 -33.54 16 15 C -0.09 -3.23 4.49 29.10 0.13 -3.10 16 16 C 0.00 -0.06 4.37 -19.87 -0.09 -0.14 16 17 C -0.15 -4.66 9.70 22.27 0.22 -4.44 16 18 C -0.02 -0.55 9.47 22.27 0.21 -0.34 16 19 C -0.68 -17.31 5.65 22.27 0.13 -17.18 16 20 S 2.50 46.91 5.39 -56.49 -0.30 46.60 16 21 O -0.91 -20.68 17.12 -127.65 -2.19 -22.86 16 22 O -0.91 -21.19 17.13 -127.65 -2.19 -23.37 16 23 C -0.19 -2.37 5.94 113.37 0.67 -1.69 16 24 F -0.17 -2.78 17.37 44.97 0.78 -2.00 16 25 F -0.17 -2.70 17.37 44.97 0.78 -1.92 16 26 C -0.02 -0.51 9.47 22.27 0.21 -0.30 16 27 C -0.14 -4.30 9.70 22.27 0.22 -4.08 16 28 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 4.82 5.34 -2.39 -0.01 4.81 16 34 H 0.03 1.40 7.56 -2.39 -0.02 1.38 16 35 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 36 H 0.11 3.67 7.59 -2.38 -0.02 3.65 16 37 H 0.10 3.79 8.04 -2.39 -0.02 3.77 16 38 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 39 H 0.16 3.57 7.57 -2.91 -0.02 3.55 16 40 H 0.21 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.16 3.38 7.56 -2.91 -0.02 3.36 16 42 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -70.81 379.87 3.39 -67.42 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 1.05 Total: 26.70 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.84 Total: -27.26 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.38 Total: -69.13 kcal Atomic # 8 Polarization: -75.36 SS G_CDS: -4.42 Total: -79.78 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.56 Total: -3.92 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Atomic # 16 Polarization: 46.91 SS G_CDS: -0.30 Total: 46.60 kcal Total: -70.81 3.39 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096418255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.588 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds