Wall clock time and date at job start Tue Mar 31 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46964 * 2 1 4 4 C 1.50697 * 109.47332 * 120.00119 * 2 1 3 5 5 C 1.38247 * 119.98676 * 260.00541 * 4 2 1 6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2 7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5 9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5 10 10 C 1.38219 * 119.98927 * 359.42057 * 9 7 6 11 11 N 1.46903 * 109.47249 * 240.00143 * 2 1 3 12 12 C 1.46956 * 110.99718 * 183.79842 * 11 2 1 13 13 C 1.53058 * 109.36417 * 176.81069 * 12 11 2 14 14 N 1.46954 * 109.36029 * 58.40242 * 13 12 11 15 15 C 1.46903 * 110.99800 * 176.81346 * 14 13 12 16 16 C 1.52995 * 109.47155 * 293.79922 * 15 14 13 17 17 H 1.08997 * 109.47135 * 54.99671 * 16 15 14 18 18 C 1.47196 * 109.47011 * 294.99964 * 16 15 14 19 19 N 7.05700 * 130.64129 * 281.05835 * 2 1 3 20 20 C 1.53000 * 109.47477 * 175.00092 * 16 15 14 21 21 C 1.50694 * 109.47576 * 184.99994 * 20 16 15 22 22 H 1.08000 * 119.99560 * 359.97438 * 21 20 16 23 23 C 1.37872 * 120.00377 * 179.97438 * 21 20 16 24 24 N 1.31518 * 119.99813 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46977 * 60.00505 * 25 23 21 27 27 H 1.48508 * 109.47106 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47449 * 300.00312 * 25 23 21 29 29 C 1.46956 * 110.88171 * 300.67716 * 14 13 12 30 30 C 1.46954 * 110.99800 * 60.00065 * 11 2 1 31 31 H 1.09002 * 109.46855 * 60.00215 * 1 2 3 32 32 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47435 * 299.99619 * 1 2 3 34 34 H 1.08003 * 119.99321 * 359.97223 * 5 4 2 35 35 H 1.08003 * 120.00776 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.00645 * 179.69150 * 9 7 6 37 37 H 1.07997 * 119.99421 * 180.29781 * 10 9 7 38 38 H 1.09004 * 109.49508 * 296.77768 * 12 11 2 39 39 H 1.09004 * 109.49495 * 56.84637 * 12 11 2 40 40 H 1.09005 * 109.48534 * 298.43631 * 13 12 11 41 41 H 1.08995 * 109.48619 * 178.37012 * 13 12 11 42 42 H 1.09007 * 109.46779 * 53.79757 * 15 14 13 43 43 H 1.09000 * 109.47139 * 173.79410 * 15 14 13 44 44 H 1.09008 * 109.46875 * 304.99782 * 20 16 15 45 45 H 1.09004 * 109.47211 * 64.99314 * 20 16 15 46 46 H 0.97005 * 119.99592 * 180.02562 * 24 23 21 47 47 H 1.09000 * 109.49066 * 299.35612 * 29 14 13 48 48 H 1.09004 * 109.48972 * 179.29004 * 29 14 13 49 49 H 1.08992 * 109.48786 * 303.14999 * 30 11 2 50 50 H 1.08997 * 109.49370 * 63.22671 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4586 0.0197 2.3242 6 6 2.9190 -0.6312 3.4532 7 6 2.9537 -2.0139 3.4883 8 17 3.5312 -2.8322 4.9063 9 6 2.5329 -2.7439 2.3911 10 6 2.0670 -2.0920 1.2649 11 7 2.0197 -0.6925 -1.1995 12 6 3.4859 -0.7912 -1.1888 13 6 3.9499 -1.5864 -2.4115 14 7 3.4787 -0.9200 -3.6335 15 6 3.9684 -1.6125 -4.8330 16 6 5.4904 -1.4789 -4.9133 17 1 5.9365 -1.8439 -3.9882 18 6 5.8493 -0.0645 -5.1064 19 7 6.1263 1.0271 -5.2554 20 6 6.0133 -2.3032 -6.0915 21 6 7.5199 -2.2715 -6.0975 22 1 8.0513 -1.7183 -5.3372 23 6 8.2199 -2.9485 -7.0734 24 7 7.5727 -3.6217 -7.9995 25 14 10.0874 -2.9086 -7.0812 26 1 10.6000 -3.4804 -5.8102 27 1 10.5949 -3.7087 -8.2247 28 1 10.5520 -1.5045 -7.2152 29 6 2.0125 -0.8212 -3.6442 30 6 1.5485 -0.0260 -2.4215 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.4319 1.0991 2.2965 35 1 3.2524 -0.0607 4.3075 36 1 2.5645 -3.8232 2.4160 37 1 1.7340 -2.6618 0.4101 38 1 3.9181 0.2090 -1.2200 39 1 3.8096 -1.2993 -0.2803 40 1 3.5397 -2.5953 -2.3662 41 1 5.0387 -1.6362 -2.4211 42 1 3.6985 -2.6672 -4.7792 43 1 3.5172 -1.1668 -5.7195 44 1 5.6720 -3.3338 -5.9937 45 1 5.6373 -1.8829 -7.0243 46 1 8.0652 -4.0983 -8.6860 47 1 1.5804 -1.8214 -3.6130 48 1 1.6889 -0.3131 -4.5527 49 1 0.4597 0.0237 -2.4119 50 1 1.9586 0.9828 -2.4669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096435794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:39 Heat of formation + Delta-G solvation = 48.537353 kcal Electronic energy + Delta-G solvation = -29577.321127 eV Core-core repulsion = 25629.917536 eV Total energy + Delta-G solvation = -3947.403591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41903 -39.08006 -37.28719 -36.61632 -35.42533 -33.69918 -32.55246 -31.50434 -31.17480 -31.13055 -29.28722 -27.40600 -25.59632 -23.93833 -23.43642 -23.01953 -22.38134 -21.61902 -20.73585 -19.76202 -17.49824 -16.93727 -16.63265 -16.36837 -16.00019 -15.40646 -14.97347 -14.84214 -14.77278 -14.59697 -14.47276 -14.25511 -13.95545 -13.80542 -13.68296 -13.15332 -12.95505 -12.82417 -12.62108 -12.39737 -12.15987 -12.09094 -11.91835 -11.81085 -11.66385 -11.42733 -11.40343 -11.28956 -11.19959 -11.11653 -11.02900 -10.90799 -10.78870 -10.60099 -10.51247 -10.10871 -9.53415 -9.35266 -9.23494 -8.87826 -8.59027 -8.45602 -8.18754 -6.09849 -4.13036 0.77994 0.97255 1.82150 3.25231 3.30983 3.35237 3.38981 3.60308 3.72696 3.83038 3.97970 4.26359 4.41131 4.46482 4.57086 4.77621 4.85322 4.87417 4.89606 5.02166 5.05219 5.12776 5.21032 5.28224 5.28289 5.29800 5.36171 5.38012 5.44396 5.54998 5.63597 5.65610 5.66612 5.73688 5.82207 5.87627 5.88642 5.93304 5.96172 6.00813 6.07152 6.19447 6.36393 6.46330 6.49781 6.81866 6.82782 7.16860 7.18344 7.42060 7.52326 7.85140 8.22881 8.58771 8.91374 9.52415 11.00987 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.002135 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.555675 B =13109.166999 C =14825.274646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.120 3.880 3 H 0.051 0.949 4 C -0.072 4.072 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.036 4.036 8 Cl -0.076 7.076 9 C -0.113 4.113 10 C -0.079 4.079 11 N -0.531 5.531 12 C 0.056 3.944 13 C 0.054 3.946 14 N -0.543 5.543 15 C 0.064 3.936 16 C 0.010 3.990 17 H 0.099 0.901 18 C 0.257 3.743 19 N -0.481 5.481 20 C 0.032 3.968 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.277 1.277 29 C 0.059 3.941 30 C 0.056 3.944 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.808 2.743 22.377 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.069 0.931 4 C -0.073 4.073 5 C -0.123 4.123 6 C -0.131 4.131 7 C -0.063 4.063 8 Cl -0.047 7.047 9 C -0.132 4.132 10 C -0.098 4.098 11 N -0.256 5.256 12 C -0.072 4.072 13 C -0.074 4.074 14 N -0.268 5.268 15 C -0.065 4.065 16 C -0.012 4.012 17 H 0.117 0.883 18 C -0.060 4.060 19 N -0.158 5.158 20 C -0.007 4.007 21 C -0.564 4.564 22 H 0.074 0.926 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.202 1.202 29 C -0.069 4.069 30 C -0.072 4.072 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.318 4.212 22.109 28.399 hybrid contribution 1.163 -0.510 0.116 1.275 sum -16.155 3.702 22.226 27.725 Atomic orbital electron populations 1.21876 0.93115 1.03002 1.01916 1.20525 0.95792 0.94960 0.87575 0.93142 1.19879 0.98375 0.94091 0.94946 1.20989 0.98709 1.00069 0.92523 1.20986 1.00670 0.92278 0.99155 1.20975 1.02919 0.92864 0.89521 1.98375 1.87462 1.79286 1.39566 1.21133 0.99425 1.00529 0.92102 1.21074 0.97406 0.93905 0.97368 1.62230 1.10718 1.51491 1.01207 1.22215 0.86662 0.99878 0.98424 1.22217 1.00803 0.95783 0.88605 1.62196 1.09556 1.52664 1.02419 1.22212 0.94561 0.97407 0.92282 1.19249 0.93746 0.84255 1.03927 0.88312 1.28861 0.91399 0.94313 0.91434 1.80979 1.10494 1.13636 1.10679 1.19164 0.96271 0.94534 0.90687 1.21092 0.91151 1.31675 1.12530 0.92603 1.24946 0.98552 0.95118 0.95310 1.69930 1.35695 1.32389 1.15011 0.86661 0.85616 0.78208 0.77641 1.20038 1.21183 1.20235 1.22107 0.87904 0.99408 0.97490 1.22217 0.99892 0.96243 0.88818 0.91885 0.91448 0.92114 0.85346 0.85095 0.84936 0.84062 0.94071 0.90156 0.93671 0.89620 0.92727 0.90250 0.94467 0.95595 0.92742 0.93853 0.90334 0.90038 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.94 37.16 0.33 -0.59 16 2 C 0.12 0.94 2.27 -68.87 -0.16 0.78 16 3 H 0.05 0.42 8.00 -51.93 -0.42 0.00 16 4 C -0.07 -0.58 3.73 -104.62 -0.39 -0.97 16 5 C -0.10 -0.79 9.67 -39.59 -0.38 -1.17 16 6 C -0.11 -0.88 9.83 -39.55 -0.39 -1.27 16 7 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 8 Cl -0.08 -0.64 28.96 -51.86 -1.50 -2.14 16 9 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 10 C -0.08 -0.65 8.11 -39.59 -0.32 -0.97 16 11 N -0.53 -4.85 3.92 -227.87 -0.89 -5.74 16 12 C 0.06 0.60 5.20 -3.76 -0.02 0.58 16 13 C 0.05 0.64 5.42 -3.76 -0.02 0.62 16 14 N -0.54 -7.07 4.41 -234.45 -1.03 -8.10 16 15 C 0.06 0.93 4.32 -3.82 -0.02 0.91 16 16 C 0.01 0.19 2.14 -93.41 -0.20 -0.01 16 17 H 0.10 1.70 6.28 -51.93 -0.33 1.38 16 18 C 0.26 5.35 13.67 -20.76 -0.28 5.07 16 19 N -0.48 -10.92 18.54 42.16 0.78 -10.14 16 20 C 0.03 0.74 4.42 -27.89 -0.12 0.61 16 21 C -0.53 -13.96 8.60 -34.45 -0.30 -14.25 16 22 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 25 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.06 0.63 5.61 -3.76 -0.02 0.61 16 30 C 0.06 0.52 5.32 -3.76 -0.02 0.50 16 31 H 0.06 0.38 6.34 -51.93 -0.33 0.05 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.13 0.77 8.04 -52.48 -0.42 0.35 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 1.15 7.72 -52.49 -0.40 0.74 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.82 6.05 -51.93 -0.31 0.51 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 1.09 6.25 -51.93 -0.32 0.76 16 42 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.08 1.16 8.02 -51.93 -0.42 0.75 16 44 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 49 H 0.08 0.62 6.14 -51.93 -0.32 0.31 16 50 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 415.00 15.07 6.25 6.25 Total: -1.00 -29.88 415.00 -11.59 -41.47 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.87 Total: -3.39 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.04 Total: -9.78 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.41 Total: -48.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.88 -11.59 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.011 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds