Wall clock time and date at job start Tue Mar 31 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46964 * 2 1 4 4 C 1.50697 * 109.47332 * 120.00119 * 2 1 3 5 5 C 1.38247 * 119.98676 * 260.00541 * 4 2 1 6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2 7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5 9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5 10 10 C 1.38219 * 119.98927 * 359.42057 * 9 7 6 11 11 N 1.46903 * 109.47249 * 240.00143 * 2 1 3 12 12 C 1.46956 * 110.99718 * 183.79842 * 11 2 1 13 13 C 1.53058 * 109.36417 * 176.81069 * 12 11 2 14 14 N 1.46954 * 109.36029 * 58.40242 * 13 12 11 15 15 C 1.46903 * 110.99800 * 176.81346 * 14 13 12 16 16 C 1.52995 * 109.47155 * 293.79922 * 15 14 13 17 17 H 1.08997 * 109.47135 * 54.99671 * 16 15 14 18 18 C 1.47196 * 109.47011 * 294.99964 * 16 15 14 19 19 N 7.05700 * 130.64129 * 281.05835 * 2 1 3 20 20 C 1.53000 * 109.47477 * 175.00092 * 16 15 14 21 21 C 1.50694 * 109.47576 * 184.99994 * 20 16 15 22 22 H 1.08000 * 119.99560 * 359.97438 * 21 20 16 23 23 C 1.37872 * 120.00377 * 179.97438 * 21 20 16 24 24 N 1.31518 * 119.99813 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46977 * 60.00505 * 25 23 21 27 27 H 1.48508 * 109.47106 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47449 * 300.00312 * 25 23 21 29 29 C 1.46956 * 110.88171 * 300.67716 * 14 13 12 30 30 C 1.46954 * 110.99800 * 60.00065 * 11 2 1 31 31 H 1.09002 * 109.46855 * 60.00215 * 1 2 3 32 32 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47435 * 299.99619 * 1 2 3 34 34 H 1.08003 * 119.99321 * 359.97223 * 5 4 2 35 35 H 1.08003 * 120.00776 * 179.97438 * 6 5 4 36 36 H 1.08000 * 120.00645 * 179.69150 * 9 7 6 37 37 H 1.07997 * 119.99421 * 180.29781 * 10 9 7 38 38 H 1.09004 * 109.49508 * 296.77768 * 12 11 2 39 39 H 1.09004 * 109.49495 * 56.84637 * 12 11 2 40 40 H 1.09005 * 109.48534 * 298.43631 * 13 12 11 41 41 H 1.08995 * 109.48619 * 178.37012 * 13 12 11 42 42 H 1.09007 * 109.46779 * 53.79757 * 15 14 13 43 43 H 1.09000 * 109.47139 * 173.79410 * 15 14 13 44 44 H 1.09008 * 109.46875 * 304.99782 * 20 16 15 45 45 H 1.09004 * 109.47211 * 64.99314 * 20 16 15 46 46 H 0.97005 * 119.99592 * 180.02562 * 24 23 21 47 47 H 1.09000 * 109.49066 * 299.35612 * 29 14 13 48 48 H 1.09004 * 109.48972 * 179.29004 * 29 14 13 49 49 H 1.08992 * 109.48786 * 303.14999 * 30 11 2 50 50 H 1.08997 * 109.49370 * 63.22671 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4586 0.0197 2.3242 6 6 2.9190 -0.6312 3.4532 7 6 2.9537 -2.0139 3.4883 8 17 3.5312 -2.8322 4.9063 9 6 2.5329 -2.7439 2.3911 10 6 2.0670 -2.0920 1.2649 11 7 2.0197 -0.6925 -1.1995 12 6 3.4859 -0.7912 -1.1888 13 6 3.9499 -1.5864 -2.4115 14 7 3.4787 -0.9200 -3.6335 15 6 3.9684 -1.6125 -4.8330 16 6 5.4904 -1.4789 -4.9133 17 1 5.9365 -1.8439 -3.9882 18 6 5.8493 -0.0645 -5.1064 19 7 6.1263 1.0271 -5.2554 20 6 6.0133 -2.3032 -6.0915 21 6 7.5199 -2.2715 -6.0975 22 1 8.0513 -1.7183 -5.3372 23 6 8.2199 -2.9485 -7.0734 24 7 7.5727 -3.6217 -7.9995 25 14 10.0874 -2.9086 -7.0812 26 1 10.6000 -3.4804 -5.8102 27 1 10.5949 -3.7087 -8.2247 28 1 10.5520 -1.5045 -7.2152 29 6 2.0125 -0.8212 -3.6442 30 6 1.5485 -0.0260 -2.4215 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 2.4319 1.0991 2.2965 35 1 3.2524 -0.0607 4.3075 36 1 2.5645 -3.8232 2.4160 37 1 1.7340 -2.6618 0.4101 38 1 3.9181 0.2090 -1.2200 39 1 3.8096 -1.2993 -0.2803 40 1 3.5397 -2.5953 -2.3662 41 1 5.0387 -1.6362 -2.4211 42 1 3.6985 -2.6672 -4.7792 43 1 3.5172 -1.1668 -5.7195 44 1 5.6720 -3.3338 -5.9937 45 1 5.6373 -1.8829 -7.0243 46 1 8.0652 -4.0983 -8.6860 47 1 1.5804 -1.8214 -3.6130 48 1 1.6889 -0.3131 -4.5527 49 1 0.4597 0.0237 -2.4119 50 1 1.9586 0.9828 -2.4669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096435794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:38 Heat of formation + Delta-G solvation = 33.461088 kcal Electronic energy + Delta-G solvation = -29577.974883 eV Core-core repulsion = 25629.917536 eV Total energy + Delta-G solvation = -3948.057347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.11980 -39.92759 -38.40541 -37.45960 -36.60168 -35.46927 -33.91100 -32.46932 -32.10492 -31.88831 -30.00368 -28.77447 -26.87140 -24.84070 -24.21152 -23.91286 -23.63209 -23.03356 -21.42500 -20.59239 -18.56306 -18.17257 -18.09461 -17.50442 -16.67316 -16.64198 -16.12950 -15.78668 -15.75557 -15.65068 -15.33648 -15.26051 -14.89360 -14.59672 -14.40763 -14.33867 -14.21555 -14.00225 -13.76652 -13.68761 -13.38961 -13.18067 -13.01714 -12.83051 -12.73363 -12.58159 -12.52953 -12.42411 -12.36947 -12.30786 -12.15488 -12.04089 -11.84432 -11.74618 -11.63658 -11.46045 -11.31848 -11.03355 -10.54515 -9.94796 -9.49940 -9.37651 -9.15885 -8.19180 -6.27303 0.16487 0.37932 1.19376 1.40847 1.42543 1.49480 2.06173 2.13832 2.41458 2.63160 2.88871 2.96017 3.16238 3.35514 3.64857 3.88102 3.94590 4.01090 4.02322 4.20396 4.26383 4.29866 4.33958 4.44070 4.49991 4.53099 4.55480 4.58654 4.61923 4.74296 4.74960 4.80730 4.87069 4.87478 4.98938 5.02096 5.04192 5.07249 5.10037 5.18212 5.28198 5.32688 5.37750 5.46685 5.56656 5.62059 5.79229 5.87028 6.00695 6.03270 6.17903 6.24381 6.25752 6.83100 6.93213 7.41102 8.91464 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.002135 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.555675 B =13109.166999 C =14825.274646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.121 3.879 3 H 0.048 0.952 4 C -0.076 4.076 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.048 4.048 8 Cl -0.080 7.080 9 C -0.119 4.119 10 C -0.082 4.082 11 N -0.528 5.528 12 C 0.066 3.934 13 C 0.054 3.946 14 N -0.556 5.556 15 C 0.075 3.925 16 C 0.021 3.979 17 H 0.113 0.887 18 C 0.267 3.733 19 N -0.515 5.515 20 C 0.039 3.961 21 C -0.539 4.539 22 H 0.052 0.948 23 C 0.013 3.987 24 N -0.922 5.922 25 Si 0.946 3.054 26 H -0.263 1.263 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.059 3.941 30 C 0.061 3.939 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.023 0.977 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.002 0.998 46 H 0.264 0.736 47 H 0.051 0.949 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 2.754 23.573 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.066 0.934 4 C -0.077 4.077 5 C -0.125 4.125 6 C -0.135 4.135 7 C -0.075 4.075 8 Cl -0.051 7.051 9 C -0.138 4.138 10 C -0.101 4.101 11 N -0.253 5.253 12 C -0.063 4.063 13 C -0.074 4.074 14 N -0.281 5.281 15 C -0.054 4.054 16 C 0.000 4.000 17 H 0.131 0.869 18 C -0.049 4.049 19 N -0.193 5.193 20 C 0.000 4.000 21 C -0.577 4.577 22 H 0.070 0.930 23 C -0.187 4.187 24 N -0.562 5.562 25 Si 0.772 3.228 26 H -0.188 1.188 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.068 4.068 30 C -0.067 4.067 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.122 0.878 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.195 4.224 23.325 29.883 hybrid contribution 1.407 -0.495 -0.232 1.510 sum -16.788 3.729 23.093 28.793 Atomic orbital electron populations 1.21844 0.91823 1.03079 1.02663 1.20559 0.96713 0.94546 0.86834 0.93392 1.19954 0.98463 0.94117 0.95162 1.21186 0.98218 1.00909 0.92210 1.21182 1.00432 0.92171 0.99716 1.21123 1.03444 0.93305 0.89594 1.98371 1.87542 1.79400 1.39761 1.21261 0.99405 1.01039 0.92096 1.21094 0.97564 0.94039 0.97359 1.62252 1.09588 1.51715 1.01727 1.22067 0.87633 0.98631 0.97928 1.22218 1.00231 0.96297 0.88636 1.62146 1.11276 1.52657 1.02029 1.22016 0.91609 0.98500 0.93246 1.19194 0.96522 0.81935 1.02395 0.86912 1.29343 0.90379 0.94716 0.90463 1.80975 1.11760 1.14831 1.11694 1.18979 0.94535 0.94984 0.91464 1.21504 0.93151 1.30958 1.12128 0.92956 1.25692 1.02608 0.95106 0.95251 1.70023 1.37156 1.33339 1.15690 0.85781 0.80969 0.77822 0.78206 1.18757 1.20665 1.20762 1.22172 0.86219 1.00085 0.98374 1.22210 1.01063 0.95129 0.88308 0.91268 0.91653 0.91273 0.83845 0.83923 0.84231 0.84011 0.95848 0.89761 0.92983 0.90694 0.91317 0.90381 0.94673 0.97992 0.92694 0.93121 0.90020 0.87837 0.95341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.94 71.98 0.64 -0.81 16 2 C 0.12 1.67 2.27 44.17 0.10 1.77 16 3 H 0.05 0.71 8.00 -2.38 -0.02 0.69 16 4 C -0.08 -1.10 3.73 -19.86 -0.07 -1.17 16 5 C -0.11 -1.43 9.67 22.27 0.22 -1.22 16 6 C -0.12 -1.66 9.83 22.29 0.22 -1.44 16 7 C -0.05 -0.77 6.32 22.32 0.14 -0.63 16 8 Cl -0.08 -1.29 28.96 -2.72 -0.08 -1.37 16 9 C -0.12 -1.83 9.83 22.29 0.22 -1.61 16 10 C -0.08 -1.23 8.11 22.27 0.18 -1.04 16 11 N -0.53 -8.68 3.92 -874.85 -3.43 -12.10 16 12 C 0.07 1.31 5.20 86.31 0.45 1.76 16 13 C 0.05 1.21 5.42 86.31 0.47 1.68 16 14 N -0.56 -13.69 4.41 -895.68 -3.95 -17.64 16 15 C 0.08 2.09 4.32 86.30 0.37 2.47 16 16 C 0.02 0.76 2.14 -12.60 -0.03 0.74 16 17 H 0.11 3.77 6.28 -2.39 -0.02 3.76 16 18 C 0.27 11.07 13.67 89.44 1.22 12.29 16 19 N -0.51 -23.38 18.54 20.01 0.37 -23.01 16 20 C 0.04 1.80 4.42 29.85 0.13 1.93 16 21 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16 22 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 23 C 0.01 0.69 5.46 84.65 0.46 1.15 16 24 N -0.92 -52.82 13.29 21.45 0.28 -52.54 16 25 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 29 C 0.06 1.15 5.61 86.31 0.48 1.63 16 30 C 0.06 1.01 5.32 86.31 0.46 1.47 16 31 H 0.07 0.65 6.34 -2.39 -0.02 0.64 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.14 1.43 8.04 -2.91 -0.02 1.41 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.14 2.08 7.72 -2.91 -0.02 2.05 16 38 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.08 1.62 6.05 -2.39 -0.01 1.61 16 40 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 41 H 0.07 1.82 6.25 -2.39 -0.01 1.81 16 42 H 0.07 1.74 8.12 -2.38 -0.02 1.72 16 43 H 0.08 2.21 8.02 -2.39 -0.02 2.19 16 44 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.00 0.08 8.14 -2.38 -0.02 0.07 16 46 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.08 1.54 8.07 -2.38 -0.02 1.52 16 49 H 0.10 1.29 6.14 -2.39 -0.01 1.28 16 50 H 0.03 0.56 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -63.08 415.00 2.04 -61.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.93 Total: 9.52 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.89 Total: -9.38 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -6.72 Total: -105.29 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -63.08 2.04 -61.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.498 kcal (2) G-P(sol) polarization free energy of solvation -63.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds