Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47617 * 2 1 4 4 C 1.50702 * 109.47178 * 239.99481 * 2 1 3 5 5 C 1.38243 * 119.98936 * 206.18353 * 4 2 1 6 6 C 1.38207 * 120.01447 * 179.72833 * 5 4 2 7 7 C 1.38356 * 119.98585 * 0.54844 * 6 5 4 8 8 Cl 1.73602 * 120.01164 * 179.70205 * 7 6 5 9 9 C 1.38349 * 119.97412 * 359.72856 * 7 6 5 10 10 C 1.38212 * 119.98266 * 359.97438 * 9 7 6 11 11 N 1.46901 * 109.46904 * 119.99838 * 2 1 3 12 12 C 1.46953 * 110.99791 * 289.74642 * 11 2 1 13 13 C 1.53055 * 109.36007 * 183.18699 * 12 11 2 14 14 N 1.46959 * 109.36666 * 301.59417 * 13 12 11 15 15 C 1.46894 * 110.99769 * 183.18993 * 14 13 12 16 16 C 1.52998 * 109.47034 * 170.00380 * 15 14 13 17 17 H 1.09004 * 109.47037 * 55.00206 * 16 15 14 18 18 C 1.47201 * 109.47098 * 295.00070 * 16 15 14 19 19 N 7.05699 * 68.63178 * 120.06102 * 2 1 3 20 20 C 1.52999 * 109.47401 * 174.99839 * 16 15 14 21 21 C 1.50700 * 109.47103 * 185.00223 * 20 16 15 22 22 H 1.07999 * 120.00499 * 359.97438 * 21 20 16 23 23 C 1.37879 * 119.99870 * 179.72697 * 21 20 16 24 24 N 1.31515 * 120.00341 * 0.27379 * 23 21 20 25 25 Si 1.86799 * 120.00242 * 180.27156 * 23 21 20 26 26 H 1.48501 * 109.47096 * 59.99936 * 25 23 21 27 27 H 1.48495 * 109.47519 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47030 * 300.00155 * 25 23 21 29 29 C 1.46952 * 110.87435 * 59.32438 * 14 13 12 30 30 C 1.46959 * 110.99972 * 53.54533 * 11 2 1 31 31 H 1.09007 * 109.46807 * 59.99942 * 1 2 3 32 32 H 1.08996 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47417 * 300.00671 * 1 2 3 34 34 H 1.08006 * 119.98971 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.00801 * 180.27221 * 6 5 4 36 36 H 1.07998 * 120.00811 * 179.97438 * 9 7 6 37 37 H 1.08008 * 119.99043 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.49205 * 63.22329 * 12 11 2 39 39 H 1.09000 * 109.50768 * 303.16074 * 12 11 2 40 40 H 1.09010 * 109.48684 * 181.63071 * 13 12 11 41 41 H 1.09002 * 109.49081 * 61.56708 * 13 12 11 42 42 H 1.08999 * 109.47637 * 50.00621 * 15 14 13 43 43 H 1.09006 * 109.47233 * 290.00183 * 15 14 13 44 44 H 1.09004 * 109.46955 * 65.00035 * 20 16 15 45 45 H 1.08996 * 109.47290 * 305.00018 * 20 16 15 46 46 H 0.97000 * 120.00765 * 179.97438 * 24 23 21 47 47 H 1.09002 * 109.49274 * 60.64890 * 29 14 13 48 48 H 1.08997 * 109.48809 * 180.70747 * 29 14 13 49 49 H 1.09002 * 109.48829 * 296.78058 * 30 11 2 50 50 H 1.09000 * 109.49042 * 56.81866 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 3.2757 -1.3147 -1.2202 6 6 3.7346 -1.9713 -2.3465 7 6 2.9541 -2.0141 -3.4880 8 17 3.5331 -2.8320 -4.9056 9 6 1.7122 -1.4043 -3.4996 10 6 1.2519 -0.7533 -2.3706 11 7 2.0196 -0.6925 1.1995 12 6 1.7581 0.1003 2.4088 13 6 2.3522 -0.6164 3.6237 14 7 1.7591 -1.9561 3.7374 15 6 2.2487 -2.6485 4.9368 16 6 1.4330 -3.9238 5.1582 17 1 1.4666 -4.5375 4.2580 18 6 0.0364 -3.5672 5.4572 19 7 -1.0413 -3.2920 5.6879 20 6 2.0216 -4.7084 6.3324 21 6 1.2961 -6.0218 6.4730 22 1 0.4950 -6.2718 5.7932 23 6 1.6585 -6.9066 7.4664 24 7 2.6336 -6.6021 8.2947 25 14 0.7643 -8.5379 7.6360 26 1 0.9208 -9.3207 6.3838 27 1 1.3396 -9.3020 8.7719 28 1 -0.6779 -8.2881 7.8866 29 6 2.0206 -2.7489 2.5280 30 6 1.4265 -2.0323 1.3131 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.8866 -1.2777 -0.3303 35 1 4.7041 -2.4470 -2.3369 36 1 1.1027 -1.4370 -4.3905 37 1 0.2826 -0.2769 -2.3796 38 1 0.6824 0.2139 2.5438 39 1 2.2175 1.0834 2.3060 40 1 2.1343 -0.0445 4.5258 41 1 3.4317 -0.7057 3.5013 42 1 2.1429 -1.9947 5.8025 43 1 3.2991 -2.9077 4.8034 44 1 1.9074 -4.1302 7.2494 45 1 3.0798 -4.8956 6.1503 46 1 2.8883 -7.2244 8.9938 47 1 3.0963 -2.8625 2.3931 48 1 1.5610 -3.7318 2.6310 49 1 0.3471 -1.9429 1.4355 50 1 1.6441 -2.6040 0.4109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096435798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = 51.349422 kcal Electronic energy + Delta-G solvation = -29638.923801 eV Core-core repulsion = 25691.642150 eV Total energy + Delta-G solvation = -3947.281651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.49755 -39.10730 -37.33544 -36.62253 -35.45275 -33.70243 -32.57091 -31.54733 -31.10492 -30.93747 -29.15599 -27.44370 -25.67430 -24.00264 -23.74282 -22.86901 -22.39803 -21.62993 -20.84919 -19.38958 -17.59531 -16.77719 -16.73924 -16.25963 -15.80964 -15.53744 -15.18548 -14.90333 -14.76516 -14.68393 -14.53122 -14.12232 -13.96911 -13.77145 -13.65922 -13.28970 -12.94022 -12.80024 -12.43990 -12.34373 -12.23449 -12.15747 -11.95219 -11.78384 -11.58952 -11.56514 -11.39197 -11.22622 -11.12443 -11.08262 -11.03236 -10.93552 -10.78162 -10.62062 -10.51776 -10.11585 -9.53872 -9.33065 -9.23917 -8.85897 -8.56627 -8.45889 -8.18790 -6.10088 -4.13332 0.81069 1.00167 1.83790 3.28489 3.30709 3.35021 3.38662 3.62144 3.72231 3.82553 3.97502 4.30656 4.40830 4.47944 4.59160 4.69895 4.85602 4.88164 4.89083 5.03410 5.04664 5.12077 5.18546 5.21738 5.25895 5.27950 5.36108 5.42741 5.45145 5.54409 5.63010 5.66112 5.67762 5.74648 5.82038 5.86054 5.90971 5.94259 5.98700 6.01264 6.08336 6.22398 6.35954 6.49300 6.49996 6.81001 6.81876 7.16279 7.17804 7.41811 7.51970 7.84786 8.22501 8.58263 8.91063 9.52101 11.00726 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.002072 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.082285 B =13507.183750 C =14908.424941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.120 3.880 3 H 0.095 0.905 4 C -0.071 4.071 5 C -0.079 4.079 6 C -0.114 4.114 7 C -0.037 4.037 8 Cl -0.077 7.077 9 C -0.114 4.114 10 C -0.107 4.107 11 N -0.529 5.529 12 C 0.057 3.943 13 C 0.059 3.941 14 N -0.543 5.543 15 C 0.064 3.936 16 C 0.010 3.990 17 H 0.099 0.901 18 C 0.257 3.743 19 N -0.481 5.481 20 C 0.032 3.968 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.277 1.277 29 C 0.053 3.947 30 C 0.054 3.946 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.263 0.737 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.048 0.952 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 15.754 -23.505 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.012 3.988 3 H 0.113 0.887 4 C -0.072 4.072 5 C -0.098 4.098 6 C -0.132 4.132 7 C -0.064 4.064 8 Cl -0.048 7.048 9 C -0.132 4.132 10 C -0.126 4.126 11 N -0.253 5.253 12 C -0.071 4.071 13 C -0.069 4.069 14 N -0.268 5.268 15 C -0.065 4.065 16 C -0.012 4.012 17 H 0.117 0.883 18 C -0.060 4.060 19 N -0.158 5.158 20 C -0.007 4.007 21 C -0.565 4.565 22 H 0.074 0.926 23 C -0.139 4.139 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.200 1.200 27 H -0.212 1.212 28 H -0.202 1.202 29 C -0.075 4.075 30 C -0.074 4.074 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.091 16.031 -23.112 28.205 hybrid contribution -0.029 -1.227 -0.061 1.229 sum 2.062 14.803 -23.173 27.575 Atomic orbital electron populations 1.22535 0.96526 1.03082 1.02515 1.20522 0.93020 0.97427 0.87867 0.88722 1.19912 0.94526 0.98170 0.94589 1.21110 0.95570 0.95403 0.97705 1.21137 1.00137 1.00243 0.91726 1.20985 0.95971 1.00306 0.89130 1.98373 1.88772 1.77946 1.39755 1.20994 0.94560 0.98378 0.99314 1.21089 1.00040 0.99361 0.92100 1.62368 1.58085 1.03112 1.01758 1.22173 0.99704 0.96245 0.88964 1.22108 0.97122 0.90260 0.97452 1.62190 1.59080 1.02743 1.02758 1.22210 0.97098 0.94966 0.92190 1.19250 0.83085 0.95660 1.03181 0.88314 1.28859 0.94527 0.91154 0.91464 1.80977 1.12996 1.11029 1.10780 1.19163 0.96678 0.94110 0.90708 1.21092 1.18234 1.01849 1.15275 0.92605 1.24947 0.94991 0.98447 0.95543 1.69924 1.28504 1.36585 1.18009 0.86660 0.80109 0.83623 0.77731 1.20050 1.21185 1.20229 1.22226 0.99408 0.97160 0.88710 1.22227 0.97709 0.89305 0.98128 0.91756 0.91542 0.91831 0.83906 0.85015 0.85187 0.84999 0.93601 0.90483 0.90336 0.93879 0.90253 0.92734 0.95601 0.94468 0.92735 0.93729 0.89643 0.93420 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 7.63 37.16 0.28 -1.08 16 2 C 0.12 0.90 2.73 -68.86 -0.19 0.71 16 3 H 0.09 0.65 8.02 -51.93 -0.42 0.24 16 4 C -0.07 -0.56 4.60 -104.62 -0.48 -1.04 16 5 C -0.08 -0.66 8.56 -39.59 -0.34 -0.99 16 6 C -0.11 -0.95 9.83 -39.55 -0.39 -1.33 16 7 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16 8 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.16 16 9 C -0.11 -0.88 9.83 -39.55 -0.39 -1.27 16 10 C -0.11 -0.79 9.13 -39.59 -0.36 -1.15 16 11 N -0.53 -4.66 3.74 -227.87 -0.85 -5.51 16 12 C 0.06 0.52 5.34 -3.77 -0.02 0.50 16 13 C 0.06 0.62 5.61 -3.76 -0.02 0.60 16 14 N -0.54 -6.93 4.41 -234.47 -1.03 -7.97 16 15 C 0.06 0.92 4.32 -3.83 -0.02 0.90 16 16 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 17 H 0.10 1.69 6.28 -51.93 -0.33 1.36 16 18 C 0.26 5.31 13.67 -20.76 -0.28 5.03 16 19 N -0.48 -10.84 18.54 42.15 0.78 -10.06 16 20 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 21 C -0.53 -13.92 8.60 -34.44 -0.30 -14.22 16 22 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 25 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.05 0.62 5.41 -3.77 -0.02 0.60 16 30 C 0.05 0.55 4.64 -3.77 -0.02 0.54 16 31 H 0.06 0.37 6.55 -51.93 -0.34 0.03 16 32 H 0.07 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.06 0.50 6.77 -51.93 -0.35 0.14 16 34 H 0.14 1.18 7.52 -52.48 -0.39 0.79 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.76 6.08 -52.48 -0.32 0.44 16 38 H 0.05 0.47 6.77 -51.93 -0.35 0.11 16 39 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 40 H 0.08 0.80 8.07 -51.92 -0.42 0.38 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.16 8.02 -51.93 -0.42 0.74 16 43 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.07 6.25 -51.93 -0.32 0.74 16 49 H 0.05 0.55 6.41 -51.93 -0.33 0.22 16 50 H 0.08 0.78 6.71 -51.93 -0.35 0.43 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -29.71 408.64 -11.53 -41.23 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.58 Total: -2.70 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.21 Total: -10.57 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.37 Total: -48.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.71 -11.53 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.581 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds