Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46870 * 2 1 4 4 C 1.50706 * 109.47006 * 120.00171 * 2 1 3 5 5 C 1.38241 * 119.98555 * 259.99798 * 4 2 1 6 6 C 1.38213 * 120.01262 * 179.97438 * 5 4 2 7 7 C 1.38352 * 119.98717 * 0.02565 * 6 5 4 8 8 Cl 1.73594 * 120.01355 * 180.02562 * 7 6 5 9 9 C 1.38359 * 119.97113 * 0.27509 * 7 6 5 10 10 C 1.38209 * 119.98497 * 359.42615 * 9 7 6 11 11 N 1.46899 * 109.47163 * 240.00288 * 2 1 3 12 12 C 1.46956 * 111.00009 * 183.80221 * 11 2 1 13 13 C 1.53048 * 109.36881 * 176.81128 * 12 11 2 14 14 N 1.46960 * 109.36159 * 58.39505 * 13 12 11 15 15 C 1.46904 * 110.99800 * 176.81185 * 14 13 12 16 16 C 1.52998 * 109.46982 * 189.87963 * 15 14 13 17 17 H 1.09000 * 109.47328 * 303.82424 * 16 15 14 18 18 C 1.47201 * 109.47094 * 63.83144 * 16 15 14 19 19 N 7.02179 * 119.58361 * 284.01118 * 2 1 3 20 20 C 1.53009 * 109.47036 * 183.82744 * 16 15 14 21 21 C 1.50699 * 109.47110 * 175.00239 * 20 16 15 22 22 H 1.07997 * 120.00011 * 359.97438 * 21 20 16 23 23 C 1.37877 * 119.99848 * 180.02562 * 21 20 16 24 24 N 1.31513 * 120.00238 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99771 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47073 * 89.99801 * 25 23 21 27 27 H 1.48497 * 109.46664 * 209.99678 * 25 23 21 28 28 H 1.48499 * 109.47145 * 329.99360 * 25 23 21 29 29 C 1.46957 * 110.88512 * 300.68153 * 14 13 12 30 30 C 1.46949 * 111.00182 * 60.00004 * 11 2 1 31 31 H 1.09002 * 109.46723 * 60.00169 * 1 2 3 32 32 H 1.09005 * 109.46799 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47118 * 299.99392 * 1 2 3 34 34 H 1.08000 * 119.99184 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.00606 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.00177 * 179.69869 * 9 7 6 37 37 H 1.08004 * 119.99259 * 180.30126 * 10 9 7 38 38 H 1.09008 * 109.48370 * 296.77613 * 12 11 2 39 39 H 1.08999 * 109.49232 * 56.83841 * 12 11 2 40 40 H 1.09001 * 109.49052 * 298.43605 * 13 12 11 41 41 H 1.08993 * 109.49426 * 178.36496 * 13 12 11 42 42 H 1.08994 * 109.47462 * 309.88757 * 15 14 13 43 43 H 1.09006 * 109.46919 * 69.88174 * 15 14 13 44 44 H 1.09003 * 109.46742 * 295.00314 * 20 16 15 45 45 H 1.09002 * 109.46764 * 55.00001 * 20 16 15 46 46 H 0.96992 * 120.00440 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.48780 * 299.35931 * 29 14 13 48 48 H 1.08996 * 109.48723 * 179.28645 * 29 14 13 49 49 H 1.09006 * 109.49132 * 303.15249 * 30 11 2 50 50 H 1.08999 * 109.49059 * 63.22197 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.4587 0.0196 2.3242 6 6 2.9190 -0.6314 3.4532 7 6 2.9535 -2.0140 3.4884 8 17 3.5309 -2.8324 4.9063 9 6 2.5325 -2.7441 2.3911 10 6 2.0666 -2.0920 1.2650 11 7 2.0197 -0.6924 -1.1995 12 6 3.4859 -0.7913 -1.1888 13 6 3.9499 -1.5864 -2.4115 14 7 3.4786 -0.9200 -3.6336 15 6 3.9684 -1.6124 -4.8330 16 6 3.6705 -0.7625 -6.0699 17 1 2.6024 -0.5503 -6.1163 18 6 4.4191 0.5023 -5.9879 19 7 4.9966 1.4784 -5.9247 20 6 4.0940 -1.5252 -7.3269 21 6 3.6895 -0.7426 -8.5495 22 1 3.1808 0.2039 -8.4409 23 6 3.9678 -1.2354 -9.8067 24 7 4.5868 -2.3882 -9.9390 25 14 3.4670 -0.2649 -11.3223 26 1 4.5688 0.6523 -11.7092 27 1 3.1874 -1.2019 -12.4399 28 1 2.2465 0.5262 -11.0225 29 6 2.0124 -0.8212 -3.6443 30 6 1.5485 -0.0261 -2.4215 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 2.4321 1.0990 2.2964 35 1 3.2517 -0.0608 4.3077 36 1 2.5638 -3.8233 2.4162 37 1 1.7334 -2.6619 0.4102 38 1 3.9180 0.2090 -1.2201 39 1 3.8096 -1.2993 -0.2804 40 1 3.5397 -2.5953 -2.3663 41 1 5.0386 -1.6362 -2.4212 42 1 5.0440 -1.7677 -4.7492 43 1 3.4683 -2.5765 -4.9256 44 1 5.1757 -1.6597 -7.3230 45 1 3.6067 -2.5001 -7.3417 46 1 4.7823 -2.7351 -10.8234 47 1 1.5803 -1.8214 -3.6129 48 1 1.6889 -0.3131 -4.5527 49 1 0.4597 0.0237 -2.4119 50 1 1.9587 0.9828 -2.4668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096435800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = 48.387755 kcal Electronic energy + Delta-G solvation = -29447.572478 eV Core-core repulsion = 25500.162400 eV Total energy + Delta-G solvation = -3947.410078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43845 -39.09811 -37.30347 -36.64198 -35.43295 -33.70781 -32.56263 -31.47916 -31.42103 -30.91069 -29.35569 -27.42418 -25.45213 -24.23866 -23.39107 -22.85228 -22.45155 -21.63462 -20.75277 -19.76605 -17.53692 -16.94083 -16.65064 -16.38197 -16.00672 -15.35936 -14.98793 -14.91503 -14.77537 -14.61672 -14.47678 -14.25649 -13.96826 -13.82756 -13.67734 -13.20786 -13.01474 -12.77889 -12.59230 -12.42947 -12.16016 -12.08132 -11.88516 -11.85191 -11.68212 -11.53650 -11.33681 -11.28705 -11.21030 -11.15187 -11.03837 -10.93058 -10.78713 -10.61371 -10.50284 -10.10620 -9.54221 -9.39235 -9.22832 -8.91443 -8.59170 -8.46555 -8.18829 -6.10453 -4.13614 0.74369 0.93410 1.77724 3.21919 3.29056 3.35718 3.38632 3.59726 3.72815 3.82987 3.97856 4.24992 4.40452 4.43038 4.53248 4.77659 4.85326 4.87129 4.89647 4.99199 5.05001 5.10282 5.20388 5.27674 5.27714 5.30767 5.36186 5.36513 5.44767 5.54287 5.61228 5.64516 5.67596 5.74211 5.80781 5.85204 5.88414 5.90243 5.96308 6.00749 6.06791 6.17091 6.36161 6.42747 6.49218 6.81510 6.82505 7.16709 7.18277 7.41853 7.52015 7.84661 8.22275 8.58718 8.91063 9.51853 11.00410 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.001737 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.261624 B =16115.534409 C =16566.387207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.119 3.881 3 H 0.051 0.949 4 C -0.071 4.071 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.037 4.037 8 Cl -0.076 7.076 9 C -0.114 4.114 10 C -0.079 4.079 11 N -0.531 5.531 12 C 0.056 3.944 13 C 0.060 3.940 14 N -0.543 5.543 15 C 0.064 3.936 16 C 0.010 3.990 17 H 0.099 0.901 18 C 0.257 3.743 19 N -0.481 5.481 20 C 0.032 3.968 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.062 3.938 24 N -0.891 5.891 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.053 3.947 30 C 0.056 3.944 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.262 0.738 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 -1.139 28.474 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.069 0.931 4 C -0.072 4.072 5 C -0.123 4.123 6 C -0.131 4.131 7 C -0.063 4.063 8 Cl -0.047 7.047 9 C -0.133 4.133 10 C -0.098 4.098 11 N -0.256 5.256 12 C -0.072 4.072 13 C -0.068 4.068 14 N -0.268 5.268 15 C -0.065 4.065 16 C -0.012 4.012 17 H 0.117 0.883 18 C -0.060 4.060 19 N -0.158 5.158 20 C -0.007 4.007 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.719 3.281 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.198 1.198 29 C -0.075 4.075 30 C -0.072 4.072 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.264 0.140 28.559 29.468 hybrid contribution -0.277 0.051 -0.816 0.863 sum -7.541 0.191 27.743 28.750 Atomic orbital electron populations 1.21881 0.93025 1.03049 1.02013 1.20533 0.95891 0.94946 0.87514 0.93125 1.19897 0.98216 0.94084 0.94981 1.20997 0.98681 1.00106 0.92515 1.20985 1.00695 0.92272 0.99142 1.20971 1.03010 0.92858 0.89481 1.98374 1.87470 1.79291 1.39605 1.21128 0.99512 1.00488 0.92129 1.21078 0.97388 0.93928 0.97387 1.62225 1.10481 1.51621 1.01318 1.22195 0.86973 0.99790 0.98193 1.22096 0.99975 0.95843 0.88919 1.62197 1.10051 1.52476 1.02107 1.22214 1.01083 0.95261 0.87916 1.19251 0.98348 0.86420 0.97143 0.88304 1.28848 0.92861 0.93945 0.90335 1.80974 1.10774 1.12580 1.11453 1.19171 0.97791 0.95320 0.88425 1.21129 1.38591 1.05937 0.90718 0.92539 1.24953 0.94940 0.94943 0.99144 1.69932 1.40915 1.18650 1.23489 0.86595 0.79063 0.79858 0.82577 1.20658 1.21107 1.19761 1.22224 0.87745 0.99706 0.97798 1.22237 1.00068 0.96259 0.88643 0.91748 0.91429 0.92117 0.85316 0.85097 0.84980 0.84051 0.94106 0.90296 0.93904 0.90416 0.90254 0.92740 0.95598 0.94453 0.92797 0.93623 0.89547 0.89889 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.94 37.16 0.33 -0.63 16 2 C 0.12 0.93 2.27 -68.86 -0.16 0.78 16 3 H 0.05 0.42 8.00 -51.93 -0.42 0.00 16 4 C -0.07 -0.55 3.73 -104.62 -0.39 -0.94 16 5 C -0.10 -0.75 9.67 -39.59 -0.38 -1.13 16 6 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 7 C -0.04 -0.29 6.32 -39.49 -0.25 -0.54 16 8 Cl -0.08 -0.60 28.96 -51.86 -1.50 -2.11 16 9 C -0.11 -0.88 9.83 -39.55 -0.39 -1.27 16 10 C -0.08 -0.62 8.11 -39.59 -0.32 -0.94 16 11 N -0.53 -4.85 3.92 -227.88 -0.89 -5.74 16 12 C 0.06 0.57 5.20 -3.77 -0.02 0.55 16 13 C 0.06 0.67 5.61 -3.77 -0.02 0.64 16 14 N -0.54 -7.07 4.38 -234.46 -1.03 -8.09 16 15 C 0.06 0.93 4.33 -3.82 -0.02 0.91 16 16 C 0.01 0.19 2.12 -93.40 -0.20 -0.01 16 17 H 0.10 1.67 6.32 -51.93 -0.33 1.34 16 18 C 0.26 5.32 13.64 -20.76 -0.28 5.04 16 19 N -0.48 -10.86 18.54 42.15 0.78 -10.08 16 20 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 21 C -0.53 -13.85 8.60 -34.44 -0.30 -14.15 16 22 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 25 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 C 0.05 0.61 5.41 -3.76 -0.02 0.59 16 30 C 0.06 0.55 5.32 -3.77 -0.02 0.53 16 31 H 0.06 0.42 6.34 -51.93 -0.33 0.09 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 0.74 8.04 -52.49 -0.42 0.31 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 1.10 7.72 -52.48 -0.41 0.70 16 38 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.08 0.75 6.05 -51.93 -0.31 0.43 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 43 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.04 6.26 -51.93 -0.33 0.71 16 49 H 0.08 0.70 6.14 -51.93 -0.32 0.38 16 50 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 415.00 15.07 6.25 6.25 Total: -1.00 -29.73 415.00 -11.59 -41.32 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.88 Total: -3.53 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.04 Total: -9.58 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.40 Total: -48.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.73 -11.59 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.709 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds