Wall clock time and date at job start Tue Mar 31 2020 05:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47291 * 2 1 4 4 C 1.50707 * 109.46582 * 240.00315 * 2 1 3 5 5 C 1.38247 * 119.98206 * 286.09040 * 4 2 1 6 6 C 1.38222 * 120.00891 * 179.72930 * 5 4 2 7 7 C 1.38352 * 119.98637 * 0.54809 * 6 5 4 8 8 Cl 1.73593 * 120.01414 * 179.70436 * 7 6 5 9 9 C 1.38361 * 119.97295 * 359.72420 * 7 6 5 10 10 C 1.38213 * 119.98486 * 0.02562 * 9 7 6 11 11 N 1.46901 * 109.47180 * 120.00433 * 2 1 3 12 12 C 1.46957 * 110.99847 * 300.26955 * 11 2 1 13 13 C 1.53051 * 109.36379 * 176.81539 * 12 11 2 14 14 N 1.46956 * 109.36407 * 58.39765 * 13 12 11 15 15 C 1.46905 * 110.99467 * 176.81141 * 14 13 12 16 16 C 1.53000 * 109.46644 * 199.50650 * 15 14 13 17 17 H 1.09002 * 109.47233 * 305.32174 * 16 15 14 18 18 C 1.47196 * 109.47285 * 65.32671 * 16 15 14 19 19 N 7.07747 * 125.98477 * 77.24921 * 2 1 3 20 20 C 1.53000 * 109.46924 * 185.32360 * 16 15 14 21 21 C 1.50697 * 109.47323 * 175.00005 * 20 16 15 22 22 H 1.08006 * 120.00182 * 359.97438 * 21 20 16 23 23 C 1.37881 * 120.00232 * 180.02562 * 21 20 16 24 24 N 1.31510 * 119.99644 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00038 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47171 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46882 * 119.99606 * 25 23 21 28 28 H 1.48494 * 109.47364 * 239.99790 * 25 23 21 29 29 C 1.46957 * 110.88386 * 300.68051 * 14 13 12 30 30 C 1.46956 * 110.99696 * 176.46884 * 11 2 1 31 31 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46759 * 300.00106 * 1 2 3 33 33 H 1.08999 * 109.47431 * 59.99473 * 1 2 3 34 34 H 1.07995 * 119.99634 * 0.02562 * 5 4 2 35 35 H 1.07995 * 120.00727 * 180.27042 * 6 5 4 36 36 H 1.07997 * 120.00643 * 179.97438 * 9 7 6 37 37 H 1.08005 * 119.99083 * 179.97438 * 10 9 7 38 38 H 1.09008 * 109.48499 * 296.77948 * 12 11 2 39 39 H 1.08998 * 109.48897 * 56.84041 * 12 11 2 40 40 H 1.08998 * 109.48558 * 298.43528 * 13 12 11 41 41 H 1.08999 * 109.48778 * 178.37046 * 13 12 11 42 42 H 1.08999 * 109.47090 * 319.50272 * 15 14 13 43 43 H 1.09002 * 109.46907 * 79.51146 * 15 14 13 44 44 H 1.08997 * 109.47091 * 295.00005 * 20 16 15 45 45 H 1.09007 * 109.46991 * 55.00114 * 20 16 15 46 46 H 0.97006 * 119.99381 * 180.02562 * 24 23 21 47 47 H 1.09004 * 109.48559 * 299.36022 * 29 14 13 48 48 H 1.08993 * 109.48974 * 179.28965 * 29 14 13 49 49 H 1.08999 * 109.49430 * 303.15445 * 30 11 2 50 50 H 1.08998 * 109.49000 * 63.19933 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 6 1.9496 -2.0878 -1.3153 6 6 2.4049 -2.7394 -2.4460 7 6 2.9538 -2.0140 -3.4883 8 17 3.5329 -2.8323 -4.9055 9 6 3.0414 -0.6359 -3.4006 10 6 2.5810 0.0150 -2.2715 11 7 2.0197 -0.6926 1.1994 12 6 1.5432 -0.0300 2.4215 13 6 2.0076 -0.8253 3.6439 14 7 3.4742 -0.9185 3.6363 15 6 3.9638 -1.6111 4.8358 16 6 5.4413 -1.2765 5.0503 17 1 6.0025 -1.5136 4.1465 18 6 5.5808 0.1573 5.3525 19 7 5.6885 1.2640 5.5857 20 6 5.9860 -2.0994 6.2195 21 6 7.4682 -1.8626 6.3531 22 1 7.9716 -1.1924 5.6719 23 6 8.1820 -2.5022 7.3443 24 7 7.5692 -3.3186 8.1734 25 14 10.0195 -2.2092 7.5093 26 1 10.4647 -1.2552 6.4620 27 1 10.3119 -1.6438 8.8511 28 1 10.7426 -3.4958 7.3459 29 6 3.9506 -1.5811 2.4142 30 6 3.4863 -0.7858 1.1918 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.5248 -2.6543 -0.4999 35 1 2.3363 -3.8151 -2.5139 36 1 3.4702 -0.0691 -4.2137 37 1 2.6497 1.0906 -2.2027 38 1 1.9494 0.9804 2.4693 39 1 0.4543 0.0157 2.4095 40 1 1.5794 -1.8271 3.6100 41 1 1.6799 -0.3200 4.5524 42 1 3.3883 -1.2869 5.7028 43 1 3.8502 -2.6873 4.7057 44 1 5.4856 -1.7985 7.1399 45 1 5.8023 -3.1580 6.0354 46 1 8.0714 -3.7683 8.8709 47 1 3.5444 -2.5915 2.3663 48 1 5.0395 -1.6267 2.4262 49 1 3.8139 -1.2911 0.2833 50 1 3.9145 0.2160 1.2252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096435802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:51 Heat of formation + Delta-G solvation = 47.059501 kcal Electronic energy + Delta-G solvation = -29517.329719 eV Core-core repulsion = 25569.862043 eV Total energy + Delta-G solvation = -3947.467676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.40556 -39.07433 -37.26762 -36.61955 -35.43565 -33.69659 -32.55078 -31.45147 -31.21994 -31.15683 -29.29025 -27.40813 -25.56258 -23.97879 -23.40087 -23.01455 -22.38821 -21.64498 -20.73850 -19.75035 -17.50814 -16.92973 -16.63063 -16.36604 -16.01781 -15.44089 -14.96280 -14.84236 -14.75915 -14.56847 -14.46878 -14.26101 -13.94804 -13.80257 -13.69729 -13.17861 -12.93805 -12.81603 -12.64286 -12.38638 -12.15238 -12.11678 -11.91776 -11.80171 -11.66177 -11.44519 -11.36115 -11.29800 -11.19007 -11.12175 -11.03852 -10.88525 -10.80472 -10.62561 -10.47437 -10.13903 -9.52908 -9.36815 -9.21079 -8.89787 -8.58749 -8.46135 -8.18786 -6.09895 -4.12717 0.76895 0.96333 1.81108 3.23638 3.28311 3.36588 3.41307 3.62138 3.73794 3.84543 3.97941 4.25976 4.41446 4.44748 4.55891 4.77605 4.84801 4.86540 4.90079 5.01190 5.05958 5.11800 5.21578 5.27855 5.28469 5.29646 5.35878 5.37093 5.43918 5.55119 5.63191 5.65950 5.67975 5.73655 5.81788 5.87140 5.88451 5.92224 5.96048 6.00563 6.06760 6.19340 6.36544 6.45028 6.50866 6.81572 6.82829 7.17169 7.18747 7.42863 7.53150 7.85754 8.23442 8.60118 8.92304 9.52807 11.01050 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.002068 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.577158 B =13534.567710 C =15113.932040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.120 3.880 3 H 0.050 0.950 4 C -0.072 4.072 5 C -0.078 4.078 6 C -0.113 4.113 7 C -0.036 4.036 8 Cl -0.076 7.076 9 C -0.112 4.112 10 C -0.104 4.104 11 N -0.531 5.531 12 C 0.056 3.944 13 C 0.059 3.941 14 N -0.544 5.544 15 C 0.063 3.937 16 C 0.013 3.987 17 H 0.098 0.902 18 C 0.258 3.742 19 N -0.483 5.483 20 C 0.031 3.969 21 C -0.524 4.524 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.056 3.944 30 C 0.057 3.943 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.037 0.963 46 H 0.262 0.738 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.181 1.596 -23.406 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.068 0.932 4 C -0.072 4.072 5 C -0.096 4.096 6 C -0.132 4.132 7 C -0.063 4.063 8 Cl -0.047 7.047 9 C -0.131 4.131 10 C -0.123 4.123 11 N -0.256 5.256 12 C -0.072 4.072 13 C -0.069 4.069 14 N -0.268 5.268 15 C -0.065 4.065 16 C -0.009 4.009 17 H 0.116 0.884 18 C -0.059 4.059 19 N -0.160 5.160 20 C -0.008 4.008 21 C -0.563 4.563 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.530 5.530 25 Si 0.718 3.282 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.209 1.209 29 C -0.072 4.072 30 C -0.071 4.071 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.943 3.087 -23.026 28.754 hybrid contribution 1.215 -0.392 -0.043 1.277 sum -15.728 2.695 -23.069 28.050 Atomic orbital electron populations 1.21885 0.93160 1.02985 1.01935 1.20534 0.95799 0.94945 0.87579 0.93180 1.19870 0.98078 0.94115 0.95170 1.21037 0.97890 0.93870 0.96852 1.21124 0.98981 1.00498 0.92597 1.20974 1.02420 0.92929 0.89933 1.98375 1.87476 1.79267 1.39560 1.20991 1.00780 0.92333 0.98965 1.21010 0.98237 1.00110 0.92894 1.62244 1.10566 1.51618 1.01172 1.22225 0.99873 0.96294 0.88812 1.22118 0.87922 0.99347 0.97496 1.62175 1.09405 1.52860 1.02408 1.22217 0.95213 0.97057 0.92018 1.19207 0.95150 0.83527 1.03035 0.88385 1.28878 0.91182 0.94464 0.91350 1.80976 1.10466 1.13622 1.10925 1.19177 0.96120 0.94653 0.90817 1.21176 0.92979 1.26874 1.15223 0.92488 1.24954 0.98537 0.94959 0.95556 1.69949 1.35959 1.29005 1.18124 0.86546 0.85423 0.78059 0.78125 1.19677 1.20971 1.20855 1.22198 1.00673 0.95735 0.88591 1.22186 0.86682 0.99837 0.98362 0.91451 0.91878 0.92115 0.84243 0.84962 0.85081 0.85338 0.93965 0.90047 0.93890 0.90355 0.90427 0.92509 0.95621 0.94475 0.92869 0.93739 0.89706 0.90260 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.88 37.16 0.33 -0.59 16 2 C 0.12 0.93 2.27 -68.86 -0.16 0.78 16 3 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 4 C -0.07 -0.57 3.54 -104.62 -0.37 -0.94 16 5 C -0.08 -0.62 8.43 -39.58 -0.33 -0.95 16 6 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 7 C -0.04 -0.30 6.32 -39.49 -0.25 -0.55 16 8 Cl -0.08 -0.63 28.96 -51.86 -1.50 -2.13 16 9 C -0.11 -0.87 9.83 -39.55 -0.39 -1.26 16 10 C -0.10 -0.78 9.67 -39.59 -0.38 -1.16 16 11 N -0.53 -4.83 4.09 -227.87 -0.93 -5.77 16 12 C 0.06 0.53 5.31 -3.77 -0.02 0.51 16 13 C 0.06 0.64 5.57 -3.77 -0.02 0.62 16 14 N -0.54 -7.06 4.35 -234.46 -1.02 -8.08 16 15 C 0.06 0.92 4.36 -3.82 -0.02 0.91 16 16 C 0.01 0.24 2.27 -93.41 -0.21 0.02 16 17 H 0.10 1.70 6.72 -51.93 -0.35 1.36 16 18 C 0.26 5.39 13.68 -20.76 -0.28 5.10 16 19 N -0.48 -10.96 18.54 42.16 0.78 -10.18 16 20 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 21 C -0.52 -13.92 8.60 -34.44 -0.30 -14.22 16 22 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 25 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.06 0.66 5.43 -3.77 -0.02 0.64 16 30 C 0.06 0.60 5.26 -3.77 -0.02 0.58 16 31 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.06 0.39 6.33 -51.93 -0.33 0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.14 1.08 7.91 -52.49 -0.42 0.67 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.78 7.99 -52.48 -0.42 0.36 16 38 H 0.04 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.08 0.63 6.13 -51.93 -0.32 0.32 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 42 H 0.08 1.13 7.84 -51.93 -0.41 0.73 16 43 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 1.04 6.71 -51.93 -0.35 0.69 16 49 H 0.08 0.80 6.34 -51.93 -0.33 0.47 16 50 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 416.20 15.07 6.27 6.27 Total: -1.00 -29.95 416.20 -11.65 -41.60 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -7.92 Total: -3.68 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.05 Total: -9.62 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.43 Total: -48.74 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -29.95 -11.65 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.659 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds