Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47291 * 2 1 4 4 C 1.50707 * 109.46582 * 240.00315 * 2 1 3 5 5 C 1.38247 * 119.98206 * 286.09040 * 4 2 1 6 6 C 1.38222 * 120.00891 * 179.72930 * 5 4 2 7 7 C 1.38352 * 119.98637 * 0.54809 * 6 5 4 8 8 Cl 1.73593 * 120.01414 * 179.70436 * 7 6 5 9 9 C 1.38361 * 119.97295 * 359.72420 * 7 6 5 10 10 C 1.38213 * 119.98486 * 0.02562 * 9 7 6 11 11 N 1.46901 * 109.47180 * 120.00433 * 2 1 3 12 12 C 1.46957 * 110.99847 * 300.26955 * 11 2 1 13 13 C 1.53051 * 109.36379 * 176.81539 * 12 11 2 14 14 N 1.46956 * 109.36407 * 58.39765 * 13 12 11 15 15 C 1.46905 * 110.99467 * 176.81141 * 14 13 12 16 16 C 1.53000 * 109.46644 * 199.50650 * 15 14 13 17 17 H 1.09002 * 109.47233 * 305.32174 * 16 15 14 18 18 C 1.47196 * 109.47285 * 65.32671 * 16 15 14 19 19 N 7.07747 * 125.98477 * 77.24921 * 2 1 3 20 20 C 1.53000 * 109.46924 * 185.32360 * 16 15 14 21 21 C 1.50697 * 109.47323 * 175.00005 * 20 16 15 22 22 H 1.08006 * 120.00182 * 359.97438 * 21 20 16 23 23 C 1.37881 * 120.00232 * 180.02562 * 21 20 16 24 24 N 1.31510 * 119.99644 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00038 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47171 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.46882 * 119.99606 * 25 23 21 28 28 H 1.48494 * 109.47364 * 239.99790 * 25 23 21 29 29 C 1.46957 * 110.88386 * 300.68051 * 14 13 12 30 30 C 1.46956 * 110.99696 * 176.46884 * 11 2 1 31 31 H 1.08999 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46759 * 300.00106 * 1 2 3 33 33 H 1.08999 * 109.47431 * 59.99473 * 1 2 3 34 34 H 1.07995 * 119.99634 * 0.02562 * 5 4 2 35 35 H 1.07995 * 120.00727 * 180.27042 * 6 5 4 36 36 H 1.07997 * 120.00643 * 179.97438 * 9 7 6 37 37 H 1.08005 * 119.99083 * 179.97438 * 10 9 7 38 38 H 1.09008 * 109.48499 * 296.77948 * 12 11 2 39 39 H 1.08998 * 109.48897 * 56.84041 * 12 11 2 40 40 H 1.08998 * 109.48558 * 298.43528 * 13 12 11 41 41 H 1.08999 * 109.48778 * 178.37046 * 13 12 11 42 42 H 1.08999 * 109.47090 * 319.50272 * 15 14 13 43 43 H 1.09002 * 109.46907 * 79.51146 * 15 14 13 44 44 H 1.08997 * 109.47091 * 295.00005 * 20 16 15 45 45 H 1.09007 * 109.46991 * 55.00114 * 20 16 15 46 46 H 0.97006 * 119.99381 * 180.02562 * 24 23 21 47 47 H 1.09004 * 109.48559 * 299.36022 * 29 14 13 48 48 H 1.08993 * 109.48974 * 179.28965 * 29 14 13 49 49 H 1.08999 * 109.49430 * 303.15445 * 30 11 2 50 50 H 1.08998 * 109.49000 * 63.19933 * 30 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 6 1.9496 -2.0878 -1.3153 6 6 2.4049 -2.7394 -2.4460 7 6 2.9538 -2.0140 -3.4883 8 17 3.5329 -2.8323 -4.9055 9 6 3.0414 -0.6359 -3.4006 10 6 2.5810 0.0150 -2.2715 11 7 2.0197 -0.6926 1.1994 12 6 1.5432 -0.0300 2.4215 13 6 2.0076 -0.8253 3.6439 14 7 3.4742 -0.9185 3.6363 15 6 3.9638 -1.6111 4.8358 16 6 5.4413 -1.2765 5.0503 17 1 6.0025 -1.5136 4.1465 18 6 5.5808 0.1573 5.3525 19 7 5.6885 1.2640 5.5857 20 6 5.9860 -2.0994 6.2195 21 6 7.4682 -1.8626 6.3531 22 1 7.9716 -1.1924 5.6719 23 6 8.1820 -2.5022 7.3443 24 7 7.5692 -3.3186 8.1734 25 14 10.0195 -2.2092 7.5093 26 1 10.4647 -1.2552 6.4620 27 1 10.3119 -1.6438 8.8511 28 1 10.7426 -3.4958 7.3459 29 6 3.9506 -1.5811 2.4142 30 6 3.4863 -0.7858 1.1918 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.5248 -2.6543 -0.4999 35 1 2.3363 -3.8151 -2.5139 36 1 3.4702 -0.0691 -4.2137 37 1 2.6497 1.0906 -2.2027 38 1 1.9494 0.9804 2.4693 39 1 0.4543 0.0157 2.4095 40 1 1.5794 -1.8271 3.6100 41 1 1.6799 -0.3200 4.5524 42 1 3.3883 -1.2869 5.7028 43 1 3.8502 -2.6873 4.7057 44 1 5.4856 -1.7985 7.1399 45 1 5.8023 -3.1580 6.0354 46 1 8.0714 -3.7683 8.8709 47 1 3.5444 -2.5915 2.3663 48 1 5.0395 -1.6267 2.4262 49 1 3.8139 -1.2911 0.2833 50 1 3.9145 0.2160 1.2252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096435802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = 31.915506 kcal Electronic energy + Delta-G solvation = -29517.986412 eV Core-core repulsion = 25569.862043 eV Total energy + Delta-G solvation = -3948.124369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.09673 -39.91020 -38.38779 -37.46269 -36.60046 -35.47034 -33.91143 -32.45135 -32.06912 -31.94362 -29.99643 -28.78737 -26.83238 -24.86087 -24.16704 -23.92639 -23.59847 -23.09272 -21.41866 -20.57703 -18.56571 -18.18474 -18.08470 -17.49073 -16.66902 -16.64278 -16.15807 -15.77510 -15.74250 -15.62127 -15.34054 -15.25396 -14.88187 -14.60942 -14.39859 -14.34574 -14.22809 -13.99501 -13.76165 -13.67870 -13.38790 -13.16641 -13.02598 -12.81748 -12.74951 -12.56434 -12.52359 -12.41085 -12.34249 -12.29974 -12.15499 -12.05317 -11.83947 -11.74680 -11.66184 -11.44887 -11.31968 -11.03181 -10.55274 -9.95126 -9.50749 -9.37695 -9.15956 -8.19425 -6.27211 0.16394 0.38124 1.19510 1.38699 1.41889 1.52150 2.07468 2.15080 2.41406 2.62183 2.90789 2.96482 3.16153 3.36794 3.65045 3.87354 3.94635 4.00918 4.05143 4.20494 4.26135 4.30726 4.34786 4.43935 4.49820 4.53419 4.55370 4.58737 4.63049 4.74761 4.75328 4.81303 4.86809 4.86952 4.97864 5.01897 5.03861 5.07205 5.09801 5.18163 5.28444 5.32526 5.37140 5.47519 5.57616 5.62730 5.79762 5.86820 6.00693 6.03702 6.17991 6.25053 6.25896 6.83831 6.94345 7.41272 8.91619 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.002068 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.577158 B =13534.567710 C =15113.932040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.121 3.879 3 H 0.047 0.953 4 C -0.076 4.076 5 C -0.080 4.080 6 C -0.119 4.119 7 C -0.048 4.048 8 Cl -0.079 7.079 9 C -0.117 4.117 10 C -0.107 4.107 11 N -0.527 5.527 12 C 0.061 3.939 13 C 0.060 3.940 14 N -0.556 5.556 15 C 0.075 3.925 16 C 0.024 3.976 17 H 0.112 0.888 18 C 0.268 3.732 19 N -0.516 5.516 20 C 0.038 3.962 21 C -0.537 4.537 22 H 0.052 0.948 23 C 0.012 3.988 24 N -0.922 5.922 25 Si 0.947 3.053 26 H -0.270 1.270 27 H -0.285 1.285 28 H -0.272 1.272 29 C 0.056 3.944 30 C 0.066 3.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.027 0.973 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.002 0.998 45 H 0.035 0.965 46 H 0.264 0.736 47 H 0.051 0.949 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 1.564 -24.581 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 H 0.065 0.935 4 C -0.076 4.076 5 C -0.099 4.099 6 C -0.137 4.137 7 C -0.074 4.074 8 Cl -0.051 7.051 9 C -0.135 4.135 10 C -0.126 4.126 11 N -0.252 5.252 12 C -0.067 4.067 13 C -0.068 4.068 14 N -0.281 5.281 15 C -0.054 4.054 16 C 0.002 3.998 17 H 0.129 0.871 18 C -0.048 4.048 19 N -0.194 5.194 20 C 0.000 4.000 21 C -0.575 4.575 22 H 0.070 0.930 23 C -0.187 4.187 24 N -0.563 5.563 25 Si 0.773 3.227 26 H -0.195 1.195 27 H -0.211 1.211 28 H -0.198 1.198 29 C -0.072 4.072 30 C -0.062 4.062 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.046 0.954 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.675 3.058 -24.220 30.139 hybrid contribution 1.418 -0.368 0.297 1.494 sum -16.258 2.689 -23.923 29.049 Atomic orbital electron populations 1.21855 0.91918 1.03126 1.02596 1.20565 0.96693 0.94528 0.86870 0.93481 1.19930 0.98198 0.94179 0.95305 1.21073 0.97975 0.93953 0.96885 1.21260 0.98885 1.01043 0.92548 1.21121 1.02918 0.93337 0.90036 1.98371 1.87551 1.79368 1.39764 1.21177 1.00643 0.92262 0.99432 1.21193 0.97839 1.00872 0.92647 1.62266 1.09542 1.51795 1.01627 1.22207 1.01005 0.95130 0.88364 1.22171 0.86363 1.00015 0.98263 1.62106 1.11008 1.52917 1.02102 1.22016 0.92407 0.97978 0.93001 1.19149 0.97973 0.81206 1.01463 0.87081 1.29359 0.90109 0.94903 0.90444 1.80972 1.11766 1.14776 1.11876 1.18991 0.94296 0.95172 0.91586 1.21563 0.94891 1.26222 1.14816 0.93000 1.25696 1.02462 0.95010 0.95562 1.70035 1.37429 1.30000 1.18791 0.85664 0.80991 0.78253 0.77790 1.19487 1.21094 1.19774 1.22211 1.00274 0.96188 0.88486 1.22047 0.87570 0.98666 0.97902 0.91523 0.91360 0.91344 0.84040 0.84160 0.83981 0.84007 0.95434 0.87916 0.93107 0.90325 0.90501 0.91110 0.97975 0.94677 0.92717 0.93077 0.90502 0.89838 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.88 71.98 0.64 -0.83 16 2 C 0.12 1.67 2.27 44.17 0.10 1.77 16 3 H 0.05 0.70 7.94 -2.39 -0.02 0.68 16 4 C -0.08 -1.07 3.54 -19.86 -0.07 -1.14 16 5 C -0.08 -1.16 8.43 22.27 0.19 -0.97 16 6 C -0.12 -1.76 9.83 22.29 0.22 -1.54 16 7 C -0.05 -0.75 6.32 22.33 0.14 -0.61 16 8 Cl -0.08 -1.26 28.96 -2.72 -0.08 -1.34 16 9 C -0.12 -1.65 9.83 22.29 0.22 -1.43 16 10 C -0.11 -1.44 9.67 22.26 0.22 -1.22 16 11 N -0.53 -8.65 4.09 -874.84 -3.58 -12.23 16 12 C 0.06 1.03 5.31 86.31 0.46 1.49 16 13 C 0.06 1.18 5.57 86.31 0.48 1.66 16 14 N -0.56 -13.67 4.35 -895.71 -3.90 -17.57 16 15 C 0.07 2.08 4.36 86.30 0.38 2.46 16 16 C 0.02 0.86 2.27 -12.60 -0.03 0.83 16 17 H 0.11 3.74 6.72 -2.39 -0.02 3.73 16 18 C 0.27 11.11 13.68 89.44 1.22 12.33 16 19 N -0.52 -23.39 18.54 20.01 0.37 -23.02 16 20 C 0.04 1.76 4.42 29.85 0.13 1.89 16 21 C -0.54 -28.48 8.60 25.60 0.22 -28.26 16 22 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 23 C 0.01 0.64 5.46 84.66 0.46 1.10 16 24 N -0.92 -52.83 13.29 21.45 0.28 -52.55 16 25 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 29 C 0.06 1.24 5.43 86.31 0.47 1.71 16 30 C 0.07 1.30 5.26 86.31 0.45 1.76 16 31 H 0.07 0.74 8.07 -2.39 -0.02 0.72 16 32 H 0.07 0.66 6.33 -2.39 -0.02 0.65 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.14 1.96 7.91 -2.91 -0.02 1.93 16 35 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.14 1.46 7.99 -2.91 -0.02 1.44 16 38 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.10 1.33 6.13 -2.39 -0.01 1.31 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 42 H 0.08 2.16 7.84 -2.39 -0.02 2.14 16 43 H 0.07 1.79 8.00 -2.39 -0.02 1.77 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 47 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.79 6.71 -2.39 -0.02 1.78 16 49 H 0.08 1.58 6.34 -2.39 -0.02 1.56 16 50 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -63.06 416.20 1.95 -61.11 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.93 Total: 9.02 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.90 Total: -8.99 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -6.82 Total: -105.37 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -63.06 1.95 -61.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096435802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.021 kcal (2) G-P(sol) polarization free energy of solvation -63.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds