Wall clock time and date at job start Tue Mar 31 2020 05:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00087 * 2 1 4 4 C 1.50698 * 109.46994 * 269.99911 * 3 2 1 5 5 H 1.07994 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99713 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00352 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99822 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46876 * 89.99878 * 8 6 4 10 10 H 1.48496 * 109.47196 * 210.00122 * 8 6 4 11 11 H 1.48502 * 109.46940 * 330.00153 * 8 6 4 12 12 C 1.34783 * 120.00383 * 179.97438 * 2 1 3 13 13 O 1.21587 * 120.00061 * 180.02562 * 12 2 1 14 14 N 1.34775 * 119.99685 * 359.97438 * 12 2 1 15 15 C 1.40173 * 119.99952 * 175.29503 * 14 12 2 16 16 C 1.39368 * 120.42343 * 35.20437 * 15 14 12 17 17 C 1.38314 * 118.42858 * 180.26289 * 16 15 14 18 18 C 1.38922 * 119.18506 * 359.73070 * 17 16 15 19 19 O 1.35743 * 119.61326 * 179.97438 * 18 17 16 20 20 C 1.35917 * 117.99943 * 175.03291 * 19 18 17 21 21 C 1.38740 * 120.03972 * 254.85899 * 20 19 18 22 22 C 1.38143 * 119.95324 * 179.74787 * 21 20 19 23 23 C 1.38373 * 120.03852 * 0.50225 * 22 21 20 24 24 Cl 1.73603 * 119.95386 * 179.74772 * 23 22 21 25 25 C 1.38374 * 120.09360 * 359.77364 * 23 22 21 26 26 C 1.38134 * 120.04217 * 359.97438 * 25 23 22 27 27 N 1.32229 * 120.77728 * 359.97438 * 18 17 16 28 28 C 1.31941 * 121.71423 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.47153 * 269.99917 * 1 2 3 30 30 H 1.08992 * 109.47414 * 29.99849 * 1 2 3 31 31 H 1.09001 * 109.47395 * 150.00130 * 1 2 3 32 32 H 1.09004 * 109.46839 * 30.00043 * 3 2 1 33 33 H 1.08997 * 109.47356 * 149.99849 * 3 2 1 34 34 H 0.96996 * 119.99991 * 180.02562 * 7 6 4 35 35 H 0.97000 * 119.99947 * 355.29951 * 14 12 2 36 36 H 1.08004 * 120.78387 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.40807 * 179.75469 * 17 16 15 38 38 H 1.08003 * 120.02745 * 359.97438 * 21 20 19 39 39 H 1.07997 * 119.98163 * 180.25847 * 22 21 20 40 40 H 1.08001 * 119.97554 * 179.97438 * 25 23 22 41 41 H 1.07994 * 120.02058 * 179.97438 * 26 25 23 42 42 H 1.07996 * 119.63139 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4380 3.4168 -3.4340 9 1 2.3078 4.2590 -3.9015 10 1 4.6979 4.2003 -3.4961 11 1 3.5561 2.2195 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0016 15 6 2.1624 -3.5463 -0.0975 16 6 3.4119 -3.6927 0.5022 17 6 4.0660 -4.9046 0.3739 18 6 3.4578 -5.9305 -0.3386 19 8 4.0922 -7.1233 -0.4704 20 6 3.4256 -8.1362 -1.0845 21 6 2.9065 -9.1814 -0.3342 22 6 2.2247 -10.2073 -0.9595 23 6 2.0684 -10.1980 -2.3344 24 17 1.2168 -11.4917 -3.1187 25 6 2.5903 -9.1593 -3.0850 26 6 3.2681 -8.1290 -2.4629 27 7 2.2683 -5.7587 -0.8898 28 6 1.6150 -4.6169 -0.7881 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6083 2.0284 0.5139 33 1 3.1498 1.1384 0.5138 34 1 4.0295 4.4443 -0.8504 35 1 0.4975 -2.3358 0.0708 36 1 3.8609 -2.8775 1.0502 37 1 5.0374 -5.0517 0.8224 38 1 3.0323 -9.1912 0.7385 39 1 1.8169 -11.0190 -0.3755 40 1 2.4675 -9.1542 -4.1580 41 1 3.6757 -7.3188 -3.0491 42 1 0.6453 -4.5134 -1.2521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096461242.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:28 Heat of formation + Delta-G solvation = 17.734744 kcal Electronic energy + Delta-G solvation = -28118.720379 eV Core-core repulsion = 23898.314897 eV Total energy + Delta-G solvation = -4220.405482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28078 -40.23808 -39.14897 -37.91727 -36.60246 -35.18861 -34.51844 -32.66216 -32.23743 -31.52876 -30.46777 -29.08671 -27.68872 -25.90577 -24.47580 -23.71257 -23.30259 -22.72686 -21.98816 -19.77782 -19.04793 -18.08297 -17.55191 -17.04723 -16.77285 -16.60436 -16.57898 -15.45820 -15.03093 -14.91109 -14.68985 -14.47303 -14.36845 -14.17519 -13.94398 -13.71199 -13.39031 -13.25271 -12.97191 -12.64584 -12.62767 -12.55169 -12.24784 -11.97596 -11.68806 -11.60180 -11.25821 -11.17158 -10.97000 -10.63935 -10.46684 -10.19896 -9.92447 -9.75738 -9.64591 -9.46092 -9.23141 -8.91440 -8.48401 -8.05575 -7.67639 -6.09428 -4.14268 0.57482 0.88335 1.05523 1.27061 1.74127 2.66158 3.02602 3.26997 3.34221 3.38934 3.42223 3.55292 3.87938 4.17645 4.32168 4.40692 4.44094 4.45607 4.77566 4.85838 4.97821 4.99944 5.03396 5.23675 5.25718 5.41250 5.50342 5.53258 5.58298 5.75760 5.79744 5.81531 5.98189 6.02351 6.10799 6.20673 6.32442 6.64235 6.81251 7.24299 7.26051 7.39027 7.54587 7.75249 7.87550 8.16348 8.43602 8.85610 9.09215 9.51151 10.98446 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.890536 B =15691.071902 C =16070.196386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.609 5.609 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.698 3.302 13 O -0.569 6.569 14 N -0.690 5.690 15 C 0.107 3.893 16 C -0.045 4.045 17 C -0.156 4.156 18 C 0.281 3.719 19 O -0.251 6.251 20 C 0.109 3.891 21 C -0.109 4.109 22 C -0.099 4.099 23 C -0.037 4.037 24 Cl -0.070 7.070 25 C -0.097 4.097 26 C -0.100 4.100 27 N -0.509 5.509 28 C 0.103 3.897 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.163 0.837 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 -26.019 1.389 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.399 3.601 13 O -0.446 6.446 14 N -0.341 5.341 15 C 0.009 3.991 16 C -0.073 4.073 17 C -0.178 4.178 18 C 0.103 3.897 19 O -0.158 6.158 20 C 0.067 3.933 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.064 4.064 24 Cl -0.042 7.042 25 C -0.116 4.116 26 C -0.118 4.118 27 N -0.231 5.231 28 C -0.056 4.056 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.788 -26.555 0.987 27.196 hybrid contribution -0.223 1.028 -0.799 1.321 sum -6.011 -25.527 0.188 26.226 Atomic orbital electron populations 1.21625 0.81496 1.02625 1.00522 1.47513 1.05849 1.06258 1.74805 1.19284 0.92393 0.76722 0.97597 1.21430 1.36686 1.06294 0.92302 0.92484 1.24927 0.95289 0.96372 0.97474 1.69922 1.38324 1.14305 1.30728 0.86492 0.77717 0.78583 0.84601 1.20628 1.21038 1.19935 1.15923 0.85559 0.80030 0.78542 1.90884 1.11351 1.85415 1.56919 1.42846 1.10002 1.03195 1.78059 1.18477 0.94890 0.86952 0.98827 1.21749 0.93566 0.96359 0.95626 1.20997 1.02563 0.91377 1.02814 1.19757 0.89462 0.85405 0.95045 1.84601 1.39659 1.17268 1.74233 1.18576 0.95719 0.88312 0.90730 1.21133 0.96648 0.94263 1.00671 1.20871 0.99239 0.99206 0.92438 1.20956 1.00244 0.92048 0.93150 1.98376 1.76167 1.48844 1.80768 1.20911 0.97587 0.92515 1.00549 1.21318 0.97996 0.98645 0.93873 1.67202 1.08291 1.25427 1.22138 1.22101 1.00113 0.87260 0.96149 0.93500 0.90149 0.93004 0.94653 0.93583 0.92652 0.75870 0.81917 0.83714 0.84344 0.84325 0.84401 0.84580 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.16 59.84 0.61 1.76 16 2 N -0.61 -12.16 2.86 -188.75 -0.54 -12.70 16 3 C 0.26 6.50 5.16 -5.19 -0.03 6.48 16 4 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.70 13.81 8.14 -86.91 -0.71 13.11 16 13 O -0.57 -13.57 13.41 5.29 0.07 -13.50 16 14 N -0.69 -10.03 5.19 -14.09 -0.07 -10.10 16 15 C 0.11 1.53 6.32 -83.46 -0.53 1.00 16 16 C -0.05 -0.67 8.80 -39.13 -0.34 -1.01 16 17 C -0.16 -2.04 10.04 -39.30 -0.39 -2.43 16 18 C 0.28 3.73 7.39 -17.13 -0.13 3.60 16 19 O -0.25 -3.13 9.97 -3.19 -0.03 -3.16 16 20 C 0.11 1.21 5.21 -39.21 -0.20 1.01 16 21 C -0.11 -0.99 9.99 -39.43 -0.39 -1.39 16 22 C -0.10 -0.81 9.82 -39.57 -0.39 -1.19 16 23 C -0.04 -0.33 6.32 -39.48 -0.25 -0.58 16 24 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 25 C -0.10 -0.86 9.82 -39.57 -0.39 -1.25 16 26 C -0.10 -1.02 9.45 -39.43 -0.37 -1.40 16 27 N -0.51 -6.75 8.98 -13.17 -0.12 -6.87 16 28 C 0.10 1.28 11.11 -17.35 -0.19 1.09 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.40 4.42 6.62 -40.82 -0.27 4.15 16 36 H 0.16 2.67 6.33 -52.48 -0.33 2.34 16 37 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -33.11 381.65 -9.52 -42.63 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.67 Total: 3.21 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -4.13 Total: 5.50 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.01 Total: -54.92 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.04 Total: -16.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.11 -9.52 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096461242.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.370 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds