Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35956 * 116.99782 * 2 1 4 4 C 1.38146 * 120.00271 * 0.02562 * 3 2 1 5 5 C 1.39861 * 119.84470 * 180.25423 * 4 3 2 6 6 C 1.47184 * 120.06748 * 179.70089 * 5 4 3 7 7 C 1.34517 * 119.99723 * 217.01577 * 6 5 4 8 8 C 1.47128 * 120.00103 * 8.09634 * 7 6 5 9 9 C 1.40798 * 119.29493 * 227.67271 * 8 7 6 10 10 C 1.36147 * 119.80787 * 179.78064 * 9 8 7 11 11 C 1.41046 * 118.35017 * 0.45790 * 10 9 8 12 12 C 1.40307 * 121.18773 * 179.80522 * 11 10 9 13 13 C 1.36228 * 119.66663 * 179.97438 * 12 11 10 14 14 C 1.50698 * 119.56132 * 180.02562 * 13 12 11 15 15 C 1.39318 * 120.87461 * 0.02905 * 13 12 11 16 16 C 1.36102 * 121.04019 * 359.97438 * 15 13 12 17 17 C 1.40678 * 119.75253 * 0.02562 * 16 15 13 18 18 N 1.32283 * 119.29724 * 47.94760 * 8 7 6 19 19 C 1.39922 * 119.85448 * 359.46954 * 5 4 3 20 20 C 1.37709 * 120.00792 * 0.50973 * 19 5 4 21 21 C 1.39002 * 120.15542 * 359.76411 * 20 19 5 22 22 O 1.35671 * 119.92789 * 179.97438 * 21 20 19 23 23 C 1.34774 * 116.99978 * 354.74551 * 22 21 20 24 24 H 1.08002 * 120.00234 * 5.05501 * 23 22 21 25 25 C 1.38655 * 119.99750 * 185.05617 * 23 22 21 26 26 N 1.31560 * 119.99861 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99737 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47336 * 59.99878 * 27 25 23 29 29 H 1.48498 * 109.47119 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47266 * 299.99712 * 27 25 23 31 31 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47515 * 299.99862 * 1 2 3 33 33 H 1.09003 * 109.47797 * 60.00104 * 1 2 3 34 34 H 1.07997 * 120.07553 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00148 * 37.02082 * 6 5 4 36 36 H 1.08007 * 120.00311 * 188.09189 * 7 6 5 37 37 H 1.08003 * 120.09326 * 0.02562 * 9 8 7 38 38 H 1.07996 * 120.82641 * 180.24910 * 10 9 8 39 39 H 1.08002 * 120.16649 * 0.02562 * 12 11 10 40 40 H 1.09005 * 109.47023 * 90.00316 * 14 13 12 41 41 H 1.09003 * 109.47243 * 210.00069 * 14 13 12 42 42 H 1.09001 * 109.47816 * 330.00526 * 14 13 12 43 43 H 1.07999 * 119.48383 * 179.97438 * 15 13 12 44 44 H 1.07994 * 120.12499 * 180.02562 * 16 15 13 45 45 H 1.08000 * 119.99313 * 180.27762 * 19 5 4 46 46 H 1.08006 * 119.92315 * 179.75037 * 20 19 5 47 47 H 0.97002 * 119.99356 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2937 2.3700 0.0005 5 6 1.9321 3.6144 -0.0048 6 6 1.1352 4.8519 -0.0110 7 6 1.5536 5.9177 -0.7170 8 6 2.7067 5.7938 -1.6224 9 6 3.7269 6.7630 -1.5753 10 6 4.8008 6.6561 -2.4053 11 6 4.8487 5.5683 -3.3018 12 6 5.9253 5.4025 -4.1862 13 6 5.9402 4.3401 -5.0386 14 6 7.0979 4.1640 -5.9871 15 6 4.8992 3.4141 -5.0452 16 6 3.8393 3.5437 -4.2013 17 6 3.7881 4.6278 -3.3062 18 7 2.7602 4.7772 -2.4671 19 6 3.3297 3.6803 0.0005 20 6 4.0738 2.5216 0.0004 21 6 3.4398 1.2846 0.0000 22 8 4.1775 0.1459 -0.0006 23 6 5.5138 0.2826 -0.1108 24 1 5.9577 1.2672 -0.1112 25 6 6.3186 -0.8408 -0.2236 26 7 5.7778 -2.0401 -0.2226 27 14 8.1707 -0.6514 -0.3755 28 1 8.6968 0.0479 0.8242 29 1 8.7984 -1.9929 -0.4822 30 1 8.4892 0.1415 -1.5900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3635 0.5138 -0.8900 34 1 0.2152 2.3149 0.0005 35 1 0.2148 4.9043 0.5515 36 1 1.0430 6.8645 -0.6194 37 1 3.6596 7.5868 -0.8800 38 1 5.5946 7.3880 -2.3802 39 1 6.7385 6.1133 -4.1905 40 1 7.8706 3.5616 -5.5094 41 1 6.7536 3.6625 -6.8916 42 1 7.5070 5.1405 -6.2465 43 1 4.9338 2.5804 -5.7308 44 1 3.0407 2.8170 -4.2186 45 1 3.8249 4.6401 0.0009 46 1 5.1526 2.5741 0.0004 47 1 6.3409 -2.8260 -0.3020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096765467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = 37.754402 kcal Electronic energy + Delta-G solvation = -31936.708575 eV Core-core repulsion = 27823.144404 eV Total energy + Delta-G solvation = -4113.564171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.67728 -39.50197 -37.76951 -37.46292 -36.18691 -33.59836 -33.30811 -32.23781 -31.19254 -30.11769 -29.46344 -28.51393 -26.81662 -26.22664 -25.28900 -24.02671 -22.95965 -21.86925 -21.51172 -21.46427 -19.35145 -17.99821 -17.91823 -17.35616 -16.61725 -16.26509 -15.83806 -15.33710 -15.08669 -14.79751 -14.51831 -14.33304 -14.24301 -13.94040 -13.82627 -13.81785 -13.38997 -13.31080 -13.24619 -13.02539 -12.92210 -12.39746 -12.20916 -12.12697 -11.67936 -11.48095 -11.40215 -11.37893 -11.20976 -11.09323 -10.94409 -10.85255 -10.54282 -10.52303 -10.34418 -10.32081 -9.42471 -9.38205 -9.10686 -8.73518 -8.35496 -7.89122 -7.77473 -6.68074 -6.42550 -3.96062 0.53608 0.90809 1.70654 2.20151 2.30417 2.77383 3.13202 3.13743 3.17255 3.22802 3.97277 4.07960 4.32969 4.44905 4.60205 4.65381 4.82864 4.87876 4.95716 5.07937 5.13642 5.20501 5.23406 5.29827 5.39114 5.47909 5.54866 5.56761 5.59994 5.62000 5.70332 5.75379 5.80857 5.89908 5.90983 5.95487 6.07400 6.15457 6.23730 6.28225 6.35927 6.46549 6.55753 6.62888 6.64528 6.71040 6.83477 7.02869 7.05127 7.18427 7.26625 7.43464 7.66487 7.98427 8.23589 8.24419 9.01603 9.73557 10.74408 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.006568 B = 0.004874 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4261.953720 B = 5743.751541 C = 8538.237472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.053 3.947 4 C -0.144 4.144 5 C -0.126 4.126 6 C -0.028 4.028 7 C -0.166 4.166 8 C 0.201 3.799 9 C -0.169 4.169 10 C -0.065 4.065 11 C -0.105 4.105 12 C -0.104 4.104 13 C -0.086 4.086 14 C -0.114 4.114 15 C -0.102 4.102 16 C -0.079 4.079 17 C 0.136 3.864 18 N -0.444 5.444 19 C -0.067 4.067 20 C -0.214 4.214 21 C 0.143 3.857 22 O -0.159 6.159 23 C -0.388 4.388 24 H 0.090 0.910 25 C 0.041 3.959 26 N -0.854 5.854 27 Si 0.938 3.062 28 H -0.270 1.270 29 H -0.277 1.277 30 H -0.269 1.269 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.129 0.871 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 16.021 -6.124 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.218 6.218 3 C 0.008 3.992 4 C -0.163 4.163 5 C -0.127 4.127 6 C -0.047 4.047 7 C -0.185 4.185 8 C 0.050 3.950 9 C -0.189 4.189 10 C -0.091 4.091 11 C -0.107 4.107 12 C -0.123 4.123 13 C -0.086 4.086 14 C -0.171 4.171 15 C -0.122 4.122 16 C -0.098 4.098 17 C 0.014 3.986 18 N -0.152 5.152 19 C -0.085 4.085 20 C -0.234 4.234 21 C 0.088 3.912 22 O -0.062 6.062 23 C -0.464 4.464 24 H 0.108 0.892 25 C -0.164 4.164 26 N -0.488 5.488 27 Si 0.762 3.238 28 H -0.195 1.195 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.145 0.855 44 H 0.152 0.848 45 H 0.120 0.880 46 H 0.147 0.853 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.326 14.623 -6.246 16.479 hybrid contribution 1.425 0.918 0.030 1.695 sum -2.902 15.542 -6.216 16.988 Atomic orbital electron populations 1.22869 0.80509 1.02786 1.00223 1.86229 1.19300 1.26475 1.89837 1.18019 0.89348 0.84420 1.07404 1.20714 0.98188 0.90930 1.06466 1.18077 0.92470 0.91549 1.10626 1.22028 0.96295 0.91383 0.95029 1.21573 0.97977 0.99094 0.99809 1.20097 0.93224 0.88973 0.92689 1.21855 0.95179 1.00946 1.00888 1.21276 0.97696 0.96293 0.93827 1.18813 0.96528 0.96788 0.98529 1.20727 0.97363 0.98427 0.95787 1.19639 0.96379 0.94984 0.97578 1.20820 0.96048 1.02325 0.97890 1.20768 0.93390 0.98720 0.99356 1.20849 0.98876 0.96233 0.93807 1.18834 0.90367 0.94515 0.94903 1.68422 1.23814 1.19284 1.03720 1.20749 0.92484 0.96722 0.98577 1.20732 1.00222 0.90945 1.11456 1.18745 0.88260 0.87574 0.96579 1.84014 1.19318 1.25447 1.77393 1.21305 0.78614 0.94668 1.51796 0.89239 1.25276 1.00316 0.94239 0.96573 1.70059 1.36188 0.97601 1.44973 0.85831 0.80699 0.77991 0.79260 1.19463 1.20172 1.19454 0.89201 0.93671 0.93592 0.86341 0.86408 0.85372 0.84926 0.84926 0.85829 0.90927 0.91481 0.91709 0.85530 0.84827 0.87972 0.85350 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.30 -6.88 10.28 -34.22 -0.35 -7.23 16 3 C 0.05 1.21 6.70 -39.12 -0.26 0.95 16 4 C -0.14 -2.75 8.77 -39.01 -0.34 -3.10 16 5 C -0.13 -2.31 4.85 -105.03 -0.51 -2.82 16 6 C -0.03 -0.40 9.81 -37.27 -0.37 -0.76 16 7 C -0.17 -2.19 9.73 -37.29 -0.36 -2.56 16 8 C 0.20 3.04 3.90 -83.10 -0.32 2.72 16 9 C -0.17 -2.14 9.36 -39.37 -0.37 -2.51 16 10 C -0.07 -0.82 9.87 -39.27 -0.39 -1.21 16 11 C -0.10 -1.55 5.75 -106.71 -0.61 -2.17 16 12 C -0.10 -1.36 9.37 -39.53 -0.37 -1.73 16 13 C -0.09 -1.11 5.85 -104.94 -0.61 -1.73 16 14 C -0.11 -1.12 9.98 36.00 0.36 -0.76 16 15 C -0.10 -1.46 9.58 -39.95 -0.38 -1.85 16 16 C -0.08 -1.31 9.98 -39.43 -0.39 -1.70 16 17 C 0.14 2.34 6.61 -84.86 -0.56 1.78 16 18 N -0.44 -7.84 8.21 -7.69 -0.06 -7.90 16 19 C -0.07 -1.33 7.49 -39.14 -0.29 -1.63 16 20 C -0.21 -4.95 9.14 -39.49 -0.36 -5.31 16 21 C 0.14 3.68 6.67 -38.80 -0.26 3.42 16 22 O -0.16 -4.75 9.53 -14.16 -0.13 -4.89 16 23 C -0.39 -11.15 9.48 30.89 0.29 -10.86 16 24 H 0.09 2.40 5.18 -52.49 -0.27 2.13 16 25 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 26 N -0.85 -25.53 13.67 55.48 0.76 -24.78 16 27 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 28 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 29 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 30 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 34 H 0.12 1.90 6.28 -52.49 -0.33 1.57 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 42 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.10 1.90 6.11 -52.49 -0.32 1.58 16 46 H 0.13 3.01 5.61 -52.48 -0.29 2.72 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -34.69 396.42 -9.85 -44.55 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.79 Total: 7.66 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -5.22 Total: -29.27 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.70 Total: -32.67 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.49 Total: -12.12 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.69 -9.85 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096765467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.303 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds