Wall clock time and date at job start Tue Mar 31 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35956 * 116.99782 * 2 1 4 4 C 1.38146 * 120.00271 * 0.02562 * 3 2 1 5 5 C 1.39861 * 119.84470 * 180.25423 * 4 3 2 6 6 C 1.47184 * 120.06748 * 179.70089 * 5 4 3 7 7 C 1.34517 * 119.99723 * 217.01577 * 6 5 4 8 8 C 1.47128 * 120.00103 * 8.09634 * 7 6 5 9 9 C 1.40798 * 119.29493 * 227.67271 * 8 7 6 10 10 C 1.36147 * 119.80787 * 179.78064 * 9 8 7 11 11 C 1.41046 * 118.35017 * 0.45790 * 10 9 8 12 12 C 1.40307 * 121.18773 * 179.80522 * 11 10 9 13 13 C 1.36228 * 119.66663 * 179.97438 * 12 11 10 14 14 C 1.50698 * 119.56132 * 180.02562 * 13 12 11 15 15 C 1.39318 * 120.87461 * 0.02905 * 13 12 11 16 16 C 1.36102 * 121.04019 * 359.97438 * 15 13 12 17 17 C 1.40678 * 119.75253 * 0.02562 * 16 15 13 18 18 N 1.32283 * 119.29724 * 47.94760 * 8 7 6 19 19 C 1.39922 * 119.85448 * 359.46954 * 5 4 3 20 20 C 1.37709 * 120.00792 * 0.50973 * 19 5 4 21 21 C 1.39002 * 120.15542 * 359.76411 * 20 19 5 22 22 O 1.35671 * 119.92789 * 179.97438 * 21 20 19 23 23 C 1.34774 * 116.99978 * 354.74551 * 22 21 20 24 24 H 1.08002 * 120.00234 * 5.05501 * 23 22 21 25 25 C 1.38655 * 119.99750 * 185.05617 * 23 22 21 26 26 N 1.31560 * 119.99861 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99737 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47336 * 59.99878 * 27 25 23 29 29 H 1.48498 * 109.47119 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47266 * 299.99712 * 27 25 23 31 31 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47515 * 299.99862 * 1 2 3 33 33 H 1.09003 * 109.47797 * 60.00104 * 1 2 3 34 34 H 1.07997 * 120.07553 * 359.97438 * 4 3 2 35 35 H 1.07997 * 120.00148 * 37.02082 * 6 5 4 36 36 H 1.08007 * 120.00311 * 188.09189 * 7 6 5 37 37 H 1.08003 * 120.09326 * 0.02562 * 9 8 7 38 38 H 1.07996 * 120.82641 * 180.24910 * 10 9 8 39 39 H 1.08002 * 120.16649 * 0.02562 * 12 11 10 40 40 H 1.09005 * 109.47023 * 90.00316 * 14 13 12 41 41 H 1.09003 * 109.47243 * 210.00069 * 14 13 12 42 42 H 1.09001 * 109.47816 * 330.00526 * 14 13 12 43 43 H 1.07999 * 119.48383 * 179.97438 * 15 13 12 44 44 H 1.07994 * 120.12499 * 180.02562 * 16 15 13 45 45 H 1.08000 * 119.99313 * 180.27762 * 19 5 4 46 46 H 1.08006 * 119.92315 * 179.75037 * 20 19 5 47 47 H 0.97002 * 119.99356 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2937 2.3700 0.0005 5 6 1.9321 3.6144 -0.0048 6 6 1.1352 4.8519 -0.0110 7 6 1.5536 5.9177 -0.7170 8 6 2.7067 5.7938 -1.6224 9 6 3.7269 6.7630 -1.5753 10 6 4.8008 6.6561 -2.4053 11 6 4.8487 5.5683 -3.3018 12 6 5.9253 5.4025 -4.1862 13 6 5.9402 4.3401 -5.0386 14 6 7.0979 4.1640 -5.9871 15 6 4.8992 3.4141 -5.0452 16 6 3.8393 3.5437 -4.2013 17 6 3.7881 4.6278 -3.3062 18 7 2.7602 4.7772 -2.4671 19 6 3.3297 3.6803 0.0005 20 6 4.0738 2.5216 0.0004 21 6 3.4398 1.2846 0.0000 22 8 4.1775 0.1459 -0.0006 23 6 5.5138 0.2826 -0.1108 24 1 5.9577 1.2672 -0.1112 25 6 6.3186 -0.8408 -0.2236 26 7 5.7778 -2.0401 -0.2226 27 14 8.1707 -0.6514 -0.3755 28 1 8.6968 0.0479 0.8242 29 1 8.7984 -1.9929 -0.4822 30 1 8.4892 0.1415 -1.5900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3635 0.5138 -0.8900 34 1 0.2152 2.3149 0.0005 35 1 0.2148 4.9043 0.5515 36 1 1.0430 6.8645 -0.6194 37 1 3.6596 7.5868 -0.8800 38 1 5.5946 7.3880 -2.3802 39 1 6.7385 6.1133 -4.1905 40 1 7.8706 3.5616 -5.5094 41 1 6.7536 3.6625 -6.8916 42 1 7.5070 5.1405 -6.2465 43 1 4.9338 2.5804 -5.7308 44 1 3.0407 2.8170 -4.2186 45 1 3.8249 4.6401 0.0009 46 1 5.1526 2.5741 0.0004 47 1 6.3409 -2.8260 -0.3020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096765467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:44 Heat of formation + Delta-G solvation = 17.791194 kcal Electronic energy + Delta-G solvation = -31937.574245 eV Core-core repulsion = 27823.144404 eV Total energy + Delta-G solvation = -4114.429841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80124 -41.17088 -39.26019 -38.95264 -37.67012 -34.93951 -34.38523 -34.16379 -32.35646 -31.28057 -31.06004 -29.96149 -28.00511 -27.59129 -27.18021 -25.18895 -24.10883 -23.24165 -22.96546 -22.88996 -20.64413 -19.88600 -19.25625 -18.81596 -17.87993 -17.64318 -17.18604 -16.86473 -16.66032 -16.36768 -15.97963 -15.66905 -15.40753 -15.25419 -15.22895 -15.09289 -14.99391 -14.78794 -14.33678 -14.11988 -13.95707 -13.81985 -13.63385 -13.40209 -13.11728 -13.07173 -12.76615 -12.67925 -12.60619 -12.41078 -12.23846 -12.15472 -12.09743 -11.94236 -11.81661 -11.45219 -11.35238 -10.89663 -10.51262 -10.21788 -9.53387 -9.34441 -9.06973 -8.47309 -8.35311 -6.11502 -0.54827 -0.19111 0.32101 0.57839 1.10051 1.29086 1.36485 1.46312 1.50218 2.09071 2.15078 2.56916 2.83496 3.13101 3.22326 3.37918 3.43226 3.65948 3.78524 3.88167 3.94713 4.03069 4.04068 4.17698 4.21117 4.26037 4.33260 4.41543 4.43204 4.50930 4.56039 4.66657 4.67593 4.69681 4.79451 4.83190 4.89095 4.94609 5.01130 5.07048 5.11083 5.13131 5.21930 5.30769 5.37787 5.42172 5.54881 5.58858 5.62454 5.69441 5.93076 5.94935 5.99819 6.03242 6.63826 6.96183 7.11372 7.79661 8.75950 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.006568 B = 0.004874 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4261.953720 B = 5743.751541 C = 8538.237472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.346 6.346 3 C 0.044 3.956 4 C -0.144 4.144 5 C -0.090 4.090 6 C -0.057 4.057 7 C -0.129 4.129 8 C 0.176 3.824 9 C -0.168 4.168 10 C -0.061 4.061 11 C -0.121 4.121 12 C -0.101 4.101 13 C -0.096 4.096 14 C -0.111 4.111 15 C -0.105 4.105 16 C -0.118 4.118 17 C 0.107 3.893 18 N -0.484 5.484 19 C -0.076 4.076 20 C -0.211 4.211 21 C 0.089 3.911 22 O -0.220 6.220 23 C -0.412 4.412 24 H 0.093 0.907 25 C -0.021 4.021 26 N -0.916 5.916 27 Si 1.014 2.986 28 H -0.256 1.256 29 H -0.266 1.266 30 H -0.259 1.259 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 21.222 -6.172 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.262 6.262 3 C -0.001 4.001 4 C -0.163 4.163 5 C -0.091 4.091 6 C -0.076 4.076 7 C -0.147 4.147 8 C 0.025 3.975 9 C -0.187 4.187 10 C -0.087 4.087 11 C -0.123 4.123 12 C -0.119 4.119 13 C -0.097 4.097 14 C -0.167 4.167 15 C -0.125 4.125 16 C -0.137 4.137 17 C -0.015 4.015 18 N -0.193 5.193 19 C -0.094 4.094 20 C -0.231 4.231 21 C 0.039 3.961 22 O -0.126 6.126 23 C -0.488 4.488 24 H 0.111 0.889 25 C -0.218 4.218 26 N -0.554 5.554 27 Si 0.833 3.167 28 H -0.180 1.180 29 H -0.191 1.191 30 H -0.183 1.183 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.190 0.810 38 H 0.190 0.810 39 H 0.177 0.823 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.155 0.845 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.131 0.869 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.604 19.886 -6.297 21.361 hybrid contribution 1.142 -0.276 -0.053 1.177 sum -3.461 19.610 -6.350 20.901 Atomic orbital electron populations 1.23251 0.77108 1.04845 1.02027 1.86172 1.23010 1.27042 1.89936 1.18365 0.88887 0.85866 1.06993 1.21168 0.99929 0.89886 1.05319 1.18679 0.92271 0.93393 1.04725 1.22224 0.97893 0.89468 0.98046 1.22161 0.95759 1.00243 0.96567 1.20718 0.94867 0.89152 0.92788 1.22229 0.94198 1.01063 1.01226 1.21753 0.98650 0.95840 0.92411 1.19158 0.96331 0.97205 0.99635 1.21174 0.97504 0.98719 0.94547 1.20029 0.96759 0.94545 0.98317 1.20864 0.94649 1.03838 0.97358 1.21046 0.93242 0.99411 0.98774 1.20888 0.99732 0.97028 0.96044 1.19015 0.91598 0.95425 0.95444 1.68355 1.24908 1.20894 1.05146 1.20884 0.93416 0.96013 0.99130 1.20773 0.99810 0.91567 1.10907 1.19352 0.89728 0.87654 0.99411 1.83977 1.19751 1.27511 1.81397 1.21708 0.79177 0.95272 1.52651 0.88946 1.26565 1.05867 0.93503 0.95912 1.70215 1.38290 0.98598 1.48308 0.84733 0.73553 0.78558 0.79892 1.18022 1.19065 1.18305 0.87323 0.91267 0.92012 0.82508 0.82248 0.80667 0.81031 0.80995 0.82319 0.90930 0.90589 0.89356 0.84461 0.87115 0.86268 0.86927 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.35 -16.51 10.28 -79.08 -0.81 -17.33 16 3 C 0.04 2.10 6.70 22.57 0.15 2.26 16 4 C -0.14 -5.41 8.77 22.64 0.20 -5.21 16 5 C -0.09 -3.13 4.85 -20.13 -0.10 -3.23 16 6 C -0.06 -1.37 9.81 23.77 0.23 -1.14 16 7 C -0.13 -2.74 9.73 23.75 0.23 -2.51 16 8 C 0.18 4.76 3.90 42.04 0.16 4.92 16 9 C -0.17 -3.50 9.36 22.41 0.21 -3.29 16 10 C -0.06 -1.31 9.87 22.47 0.22 -1.08 16 11 C -0.12 -3.41 5.75 -21.22 -0.12 -3.53 16 12 C -0.10 -2.41 9.37 22.30 0.21 -2.20 16 13 C -0.10 -2.42 5.85 -20.07 -0.12 -2.53 16 14 C -0.11 -1.93 9.98 71.24 0.71 -1.22 16 15 C -0.11 -3.14 9.58 22.03 0.21 -2.93 16 16 C -0.12 -4.22 9.98 22.37 0.22 -3.99 16 17 C 0.11 3.73 6.61 40.35 0.27 3.99 16 18 N -0.48 -16.81 8.21 -178.25 -1.46 -18.27 16 19 C -0.08 -3.03 7.49 22.55 0.17 -2.86 16 20 C -0.21 -10.36 9.14 22.33 0.20 -10.16 16 21 C 0.09 4.95 6.67 22.77 0.15 5.10 16 22 O -0.22 -14.43 9.53 -7.33 -0.07 -14.50 16 23 C -0.41 -25.77 9.48 67.92 0.64 -25.12 16 24 H 0.09 5.41 5.18 -2.91 -0.02 5.39 16 25 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 26 N -0.92 -59.11 13.67 21.61 0.30 -58.81 16 27 Si 1.01 45.05 29.55 68.60 2.03 47.08 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 31 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 33 H 0.06 1.69 7.66 -2.39 -0.02 1.67 16 34 H 0.16 4.57 6.28 -2.91 -0.02 4.55 16 35 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.08 1.18 8.08 -2.39 -0.02 1.17 16 42 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 43 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 45 H 0.12 4.27 6.11 -2.91 -0.02 4.25 16 46 H 0.11 5.72 5.61 -2.91 -0.02 5.70 16 47 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -88.15 396.42 6.42 -81.73 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 1.00 Total: 33.85 kcal Atomic # 6 Polarization: -59.20 SS G_CDS: 5.44 Total: -53.75 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.17 Total: -77.08 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.88 Total: -31.83 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -88.15 6.42 -81.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096765467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.523 kcal (2) G-P(sol) polarization free energy of solvation -88.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds