Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46509 * 119.99636 * 2 1 4 4 C 1.50699 * 109.47158 * 270.00048 * 3 2 1 5 5 H 1.08005 * 119.99971 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99941 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00185 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47473 * 89.99199 * 8 6 4 10 10 H 1.48504 * 109.47385 * 209.99631 * 8 6 4 11 11 H 1.48502 * 109.47219 * 329.99424 * 8 6 4 12 12 C 1.39233 * 120.00348 * 180.02562 * 2 1 3 13 13 C 1.39197 * 119.90936 * 359.97438 * 12 2 1 14 14 C 1.37621 * 120.09492 * 179.97438 * 13 12 2 15 15 C 1.39975 * 119.90928 * 0.02562 * 14 13 12 16 16 C 1.47011 * 120.09235 * 179.97438 * 15 14 13 17 17 C 1.34928 * 120.00291 * 316.86493 * 16 15 14 18 18 C 1.46307 * 119.99921 * 345.28651 * 17 16 15 19 19 N 1.31354 * 118.53024 * 353.40115 * 18 17 16 20 20 C 1.34627 * 121.65416 * 179.72245 * 19 18 17 21 21 C 1.39892 * 121.49669 * 179.97438 * 20 19 18 22 22 C 1.36597 * 119.80511 * 180.02562 * 21 20 19 23 23 C 1.38909 * 120.98228 * 0.02562 * 22 21 20 24 24 C 1.37805 * 120.59046 * 359.97438 * 23 22 21 25 25 C 1.39362 * 119.43012 * 359.97438 * 24 23 22 26 26 C 1.46996 * 121.79155 * 179.97438 * 25 24 23 27 27 O 1.21722 * 121.23139 * 0.03808 * 26 25 24 28 28 N 1.35337 * 117.53371 * 180.02562 * 26 25 24 29 29 H 0.97001 * 119.82334 * 180.02562 * 28 26 25 30 30 C 1.39980 * 119.81304 * 0.27045 * 15 14 13 31 31 C 1.37630 * 119.90334 * 359.44732 * 30 15 14 32 32 H 1.09002 * 109.47372 * 269.99695 * 1 2 3 33 33 H 1.09001 * 109.47482 * 29.99833 * 1 2 3 34 34 H 1.09002 * 109.46831 * 150.00061 * 1 2 3 35 35 H 1.08994 * 109.47083 * 30.00192 * 3 2 1 36 36 H 1.09000 * 109.46539 * 150.00013 * 3 2 1 37 37 H 0.96997 * 120.00170 * 180.02562 * 7 6 4 38 38 H 1.08002 * 119.94832 * 359.96596 * 13 12 2 39 39 H 1.08000 * 120.04153 * 180.02562 * 14 13 12 40 40 H 1.08005 * 119.99143 * 136.86601 * 16 15 14 41 41 H 1.07995 * 119.99932 * 165.28682 * 17 16 15 42 42 H 1.07999 * 120.09351 * 359.97438 * 21 20 19 43 43 H 1.08008 * 119.51002 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.70717 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.28356 * 179.97438 * 24 23 22 46 46 H 1.07992 * 120.04889 * 179.70133 * 30 15 14 47 47 H 1.07992 * 119.95246 * 180.25316 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6728 7 7 3.5540 3.6178 -0.6732 8 14 3.4374 3.4172 -3.4339 9 1 2.3075 4.2606 -3.8998 10 1 4.6980 4.1997 -3.4968 11 1 3.5537 2.2203 -4.3052 12 6 2.1612 -1.2058 -0.0005 13 6 1.4634 -2.4102 -0.0005 14 6 2.1477 -3.6042 -0.0016 15 6 3.5474 -3.6064 -0.0021 16 6 4.2825 -4.8796 -0.0027 17 6 3.8817 -5.8904 0.7961 18 6 2.9373 -5.6331 1.8835 19 7 2.5995 -4.3899 2.1401 20 6 1.7318 -4.0818 3.1222 21 6 1.3748 -2.7566 3.3929 22 6 0.4913 -2.4833 4.3983 23 6 -0.0616 -3.5038 5.1614 24 6 0.2701 -4.8192 4.9192 25 6 1.1687 -5.1220 3.8978 26 6 1.5593 -6.5063 3.5952 27 8 1.1084 -7.4424 4.2294 28 7 2.4386 -6.7017 2.5851 29 1 2.7189 -7.6018 2.3568 30 6 4.2453 -2.3930 0.0041 31 6 3.5532 -1.2034 -0.0007 32 1 -0.3634 -0.0001 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 1.6083 2.0284 0.5138 36 1 3.1498 1.1385 0.5138 37 1 4.0307 4.4437 -0.8504 38 1 0.3834 -2.4076 0.0004 39 1 1.6054 -4.5382 -0.0020 40 1 5.1434 -5.0056 -0.6426 41 1 4.2581 -6.8894 0.6329 42 1 1.7970 -1.9520 2.8093 43 1 0.2193 -1.4584 4.6035 44 1 -0.7585 -3.2643 5.9510 45 1 -0.1624 -5.6087 5.5158 46 1 5.3252 -2.3903 0.0086 47 1 4.0908 -0.2668 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096792163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = 86.689977 kcal Electronic energy + Delta-G solvation = -31874.178739 eV Core-core repulsion = 27795.029325 eV Total energy + Delta-G solvation = -4079.149414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51761 -39.09978 -38.39012 -37.78982 -35.94084 -33.61122 -33.56106 -32.60874 -31.29704 -30.47606 -29.62451 -28.45704 -27.83213 -25.50738 -24.61150 -24.38237 -22.93679 -21.96142 -21.43556 -20.70716 -19.47635 -19.16067 -18.77087 -17.42058 -16.61922 -16.40802 -15.88371 -15.84670 -15.31971 -15.19705 -15.00471 -14.55380 -14.30935 -14.06473 -13.92556 -13.74621 -13.66986 -13.41032 -12.98707 -12.86051 -12.63740 -12.51351 -12.18806 -12.06878 -11.96698 -11.70258 -11.45375 -11.28734 -11.06864 -10.88513 -10.73484 -10.42554 -10.40109 -10.34076 -10.14277 -9.95468 -9.65844 -9.56012 -9.18434 -8.62724 -8.54407 -8.18231 -7.70398 -6.39131 -6.02098 -4.21455 0.18370 0.77288 1.47169 2.14113 2.36709 2.56147 2.61377 3.00306 3.23313 3.30638 3.34689 3.92103 4.05483 4.10010 4.20878 4.37526 4.58855 4.62261 4.83053 4.93627 5.02531 5.17979 5.18346 5.32811 5.36725 5.46509 5.50170 5.58309 5.76279 5.91830 5.95295 5.99754 6.02100 6.11996 6.14752 6.17642 6.24685 6.38261 6.40135 6.43324 6.45506 6.52249 6.61399 6.79094 6.95433 7.05054 7.17477 7.23449 7.33473 7.58500 7.63509 7.77144 7.94987 8.10650 8.20630 8.44136 8.87311 9.45554 10.91675 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.002883 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.681741 B = 9708.334883 C =11055.504335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.608 5.608 3 C 0.248 3.752 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.261 3.739 13 C -0.231 4.231 14 C 0.014 3.986 15 C -0.163 4.163 16 C 0.043 3.957 17 C -0.214 4.214 18 C 0.430 3.570 19 N -0.488 5.488 20 C 0.170 3.830 21 C -0.101 4.101 22 C -0.074 4.074 23 C -0.148 4.148 24 C -0.046 4.046 25 C -0.214 4.214 26 C 0.553 3.447 27 O -0.528 6.528 28 N -0.653 5.653 29 H 0.414 0.586 30 C -0.038 4.038 31 C -0.204 4.204 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.111 0.889 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -17.210 6.202 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.311 5.311 3 C 0.128 3.872 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.152 3.848 13 C -0.254 4.254 14 C -0.006 4.006 15 C -0.166 4.166 16 C 0.020 3.980 17 C -0.235 4.235 18 C 0.170 3.830 19 N -0.208 5.208 20 C 0.059 3.941 21 C -0.121 4.121 22 C -0.094 4.094 23 C -0.166 4.166 24 C -0.065 4.065 25 C -0.220 4.220 26 C 0.346 3.654 27 O -0.404 6.404 28 N -0.297 5.297 29 H 0.252 0.748 30 C -0.057 4.057 31 C -0.227 4.227 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.129 0.871 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.310 -16.445 6.433 17.809 hybrid contribution -0.069 -0.573 -0.581 0.819 sum -2.380 -17.018 5.852 18.153 Atomic orbital electron populations 1.21505 0.81478 1.02000 0.99818 1.47100 1.04501 1.04912 1.74637 1.19317 0.92130 0.78669 0.97058 1.21555 1.36465 1.06450 0.92588 0.92242 1.24950 0.95387 0.96298 0.97368 1.69923 1.38296 1.14332 1.30765 0.86530 0.77703 0.78718 0.84725 1.20667 1.21094 1.19768 1.18013 0.91449 0.85700 0.89662 1.20334 0.98643 0.91319 1.15149 1.20369 0.92511 0.95796 0.91907 1.18202 0.92797 0.91705 1.13921 1.22456 0.93247 0.91409 0.90848 1.21358 1.03754 1.00354 0.98008 1.21451 0.89275 0.82384 0.89935 1.69575 1.18510 1.13841 1.18864 1.18816 0.91870 0.93567 0.89889 1.20783 0.98285 0.94799 0.98189 1.21060 0.94668 0.99786 0.93842 1.21134 1.01990 0.92216 1.01262 1.20938 0.94072 0.96964 0.94532 1.20582 1.06108 0.91987 1.03297 1.18388 0.78182 0.89775 0.79086 1.90870 1.54843 1.44453 1.50231 1.44797 1.41232 1.11559 1.32129 0.74763 1.20779 0.98269 0.91124 0.95551 1.20692 0.92469 0.98678 1.10857 0.94455 0.91423 0.92615 0.95215 0.94428 0.92620 0.87336 0.88828 0.85260 0.84675 0.84116 0.85171 0.85425 0.85062 0.87140 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 10.18 59.84 0.61 2.19 16 2 N -0.61 -12.07 2.98 -180.96 -0.54 -12.61 16 3 C 0.25 5.88 4.90 -5.19 -0.03 5.86 16 4 C -0.53 -13.93 9.39 -34.44 -0.32 -14.25 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.26 4.82 6.55 -83.78 -0.55 4.27 16 13 C -0.23 -3.74 9.03 -39.45 -0.36 -4.09 16 14 C 0.01 0.20 6.50 -39.16 -0.25 -0.05 16 15 C -0.16 -2.24 4.29 -105.04 -0.45 -2.69 16 16 C 0.04 0.42 9.78 -37.20 -0.36 0.06 16 17 C -0.21 -1.89 9.80 -37.51 -0.37 -2.26 16 18 C 0.43 4.90 6.65 -154.71 -1.03 3.87 16 19 N -0.49 -6.68 5.12 -9.02 -0.05 -6.72 16 20 C 0.17 2.41 6.61 -84.80 -0.56 1.85 16 21 C -0.10 -1.39 9.98 -39.56 -0.39 -1.78 16 22 C -0.07 -0.85 9.95 -39.93 -0.40 -1.25 16 23 C -0.15 -1.58 10.02 -39.49 -0.40 -1.98 16 24 C -0.05 -0.56 9.68 -39.32 -0.38 -0.94 16 25 C -0.21 -2.95 5.90 -104.71 -0.62 -3.57 16 26 C 0.55 7.56 7.99 -12.46 -0.10 7.46 16 27 O -0.53 -8.35 17.46 5.17 0.09 -8.26 16 28 N -0.65 -6.97 5.32 -11.18 -0.06 -7.03 16 29 H 0.41 3.16 8.76 -40.82 -0.36 2.80 16 30 C -0.04 -0.58 9.78 -39.15 -0.38 -0.97 16 31 C -0.20 -3.80 9.18 -39.45 -0.36 -4.16 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 35 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.04 0.95 6.17 -51.93 -0.32 0.63 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.11 1.67 6.11 -52.49 -0.32 1.35 16 39 H 0.09 1.29 7.16 -52.49 -0.38 0.91 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.14 2.14 7.91 -52.49 -0.42 1.73 16 43 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.13 1.49 7.82 -52.49 -0.41 1.08 16 46 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.13 2.73 6.11 -52.49 -0.32 2.41 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -30.90 393.57 -11.47 -42.36 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.76 Total: 5.66 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -6.80 Total: -10.86 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.09 Total: -50.52 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.90 -11.47 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096792163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.055 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds