Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99776 * 2 1 4 4 C 1.34777 * 120.00056 * 180.02562 * 2 1 3 5 5 O 1.21583 * 119.99948 * 353.72869 * 4 2 1 6 6 N 1.34779 * 119.99653 * 173.46180 * 4 2 1 7 7 C 1.47081 * 120.87709 * 160.98033 * 6 4 2 8 8 C 1.53705 * 108.27379 * 128.75329 * 7 6 4 9 9 N 1.46901 * 109.25791 * 54.07983 * 8 7 6 10 10 C 1.46899 * 110.99906 * 172.60449 * 9 8 7 11 11 C 1.50699 * 109.47403 * 314.30683 * 10 9 8 12 12 C 1.38283 * 119.97347 * 89.99461 * 11 10 9 13 13 C 1.38251 * 120.10930 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.05441 * 359.96211 * 13 12 11 15 15 C 1.38714 * 119.94597 * 0.02562 * 14 13 12 16 16 O 1.35894 * 120.05530 * 180.02562 * 15 14 13 17 17 C 1.42896 * 117.00112 * 0.02562 * 16 15 14 18 18 C 1.53008 * 109.47185 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47033 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99996 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00285 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46697 * 59.99860 * 23 21 19 25 25 H 1.48498 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46963 * 300.00411 * 23 21 19 27 27 C 1.38128 * 119.96388 * 269.72369 * 11 10 9 28 28 C 1.46903 * 111.26921 * 296.75759 * 9 8 7 29 29 C 1.47075 * 120.88317 * 341.25438 * 6 4 2 30 30 H 1.08995 * 109.46831 * 239.99008 * 1 2 3 31 31 H 1.08996 * 109.47684 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.46827 * 120.00062 * 1 2 3 33 33 H 1.08990 * 109.47706 * 271.82849 * 3 2 1 34 34 H 1.09008 * 109.46719 * 31.83247 * 3 2 1 35 35 H 1.09002 * 109.46505 * 151.82363 * 3 2 1 36 36 H 1.08997 * 109.62624 * 248.51516 * 7 6 4 37 37 H 1.08994 * 109.63290 * 9.10028 * 7 6 4 38 38 H 1.08996 * 109.64766 * 294.07453 * 8 7 6 39 39 H 1.08995 * 109.41954 * 173.94368 * 8 7 6 40 40 H 1.09002 * 109.46523 * 74.30259 * 10 9 8 41 41 H 1.08997 * 109.46780 * 194.29765 * 10 9 8 42 42 H 1.07993 * 119.94972 * 359.97438 * 12 11 10 43 43 H 1.07994 * 119.97377 * 179.97438 * 13 12 11 44 44 H 1.07993 * 120.02668 * 180.02562 * 14 13 12 45 45 H 1.08999 * 109.47277 * 299.99521 * 17 16 15 46 46 H 1.09004 * 109.47232 * 60.00103 * 17 16 15 47 47 H 1.08999 * 109.46907 * 300.00097 * 18 17 16 48 48 H 1.08995 * 109.46561 * 59.99945 * 18 17 16 49 49 H 0.96998 * 120.00355 * 180.02562 * 22 21 19 50 50 H 1.07999 * 120.03422 * 359.97438 * 27 11 10 51 51 H 1.09005 * 109.48802 * 303.14687 * 28 9 8 52 52 H 1.08997 * 109.48925 * 183.06774 * 28 9 8 53 53 H 1.09003 * 109.63010 * 350.90139 * 29 6 4 54 54 H 1.08997 * 109.62927 * 111.28325 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5365 -2.2170 0.1140 6 7 3.4801 -1.1708 -0.1334 7 6 4.2753 -2.3412 0.2683 8 6 5.1948 -2.7240 -0.9024 9 7 5.9793 -1.5496 -1.3064 10 6 6.9952 -1.9127 -2.3034 11 6 7.7032 -3.1686 -1.8648 12 6 7.2177 -4.4053 -2.2483 13 6 7.8653 -5.5592 -1.8480 14 6 9.0003 -5.4793 -1.0641 15 6 9.4895 -4.2400 -0.6783 16 8 10.6059 -4.1588 0.0923 17 6 11.2256 -5.3902 0.4684 18 6 12.4584 -5.0995 1.3267 19 6 13.1123 -6.3982 1.7227 20 1 12.6906 -7.3370 1.3954 21 6 14.2484 -6.3880 2.5039 22 7 14.7612 -5.2448 2.9038 23 14 15.0586 -7.9977 2.9954 24 1 15.4688 -8.7381 1.7753 25 1 16.2552 -7.7156 3.8283 26 1 14.0962 -8.8191 3.7727 27 6 8.8399 -3.0831 -1.0847 28 6 5.1113 -0.4750 -1.8063 29 6 4.1879 -0.0024 -0.6784 30 1 -0.3633 -0.5140 0.8899 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.3508 1.5999 -1.0270 34 1 1.6229 2.0200 0.5421 35 1 3.1637 1.1304 0.4853 36 1 4.8758 -2.0929 1.1434 37 1 3.6107 -3.1732 0.5008 38 1 4.5930 -3.0665 -1.7442 39 1 5.8686 -3.5210 -0.5884 40 1 6.5140 -2.0843 -3.2663 41 1 7.7178 -1.1021 -2.3977 42 1 6.3311 -4.4698 -2.8616 43 1 7.4840 -6.5239 -2.1485 44 1 9.5061 -6.3810 -0.7520 45 1 10.5192 -5.9931 1.0390 46 1 11.5268 -5.9337 -0.4272 47 1 13.1647 -4.4968 0.7558 48 1 12.1576 -4.5558 2.2222 49 1 15.5606 -5.2375 3.4530 50 1 9.2215 -2.1169 -0.7895 51 1 4.5107 -0.8489 -2.6356 52 1 5.7247 0.3587 -2.1478 53 1 3.4654 0.7126 -1.0721 54 1 4.7774 0.4683 0.1083 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097032625.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = -9.852599 kcal Electronic energy + Delta-G solvation = -32155.247262 eV Core-core repulsion = 27900.435622 eV Total energy + Delta-G solvation = -4254.811640 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.81679 -41.14207 -39.62861 -38.26124 -36.91205 -35.75381 -35.40731 -32.62466 -32.51638 -32.20661 -30.61720 -29.24294 -28.97287 -27.21796 -26.73810 -25.00703 -24.76332 -23.48011 -23.27214 -22.03070 -21.47824 -20.54350 -19.09519 -18.19081 -18.11447 -17.53949 -17.25702 -17.01587 -16.94743 -16.86539 -16.46807 -16.36709 -16.13484 -15.82368 -15.35815 -15.06208 -14.92800 -14.90275 -14.40362 -14.32465 -14.25949 -14.21251 -14.03006 -13.75877 -13.46609 -13.20234 -13.12315 -12.99073 -12.84716 -12.65571 -12.55329 -12.46413 -12.43325 -12.21510 -12.12141 -11.90623 -11.68933 -11.57411 -11.55821 -11.38616 -11.02781 -10.61333 -10.05677 -9.85856 -9.48584 -9.18217 -9.05790 -8.26415 -6.40297 0.32126 0.51541 1.40867 1.44718 1.52717 1.54654 1.95796 2.27233 2.51351 2.63054 2.77474 3.07805 3.11359 3.69776 3.80493 3.91491 3.98136 4.03860 4.11933 4.15607 4.25559 4.26779 4.28573 4.32985 4.35991 4.41175 4.43921 4.45944 4.53768 4.55749 4.68637 4.71911 4.73754 4.75089 4.79377 4.84974 4.86852 4.91614 4.91898 5.04203 5.10474 5.31235 5.36027 5.43442 5.47101 5.51313 5.56465 5.58146 5.68072 5.79429 5.87799 5.99447 6.07013 6.09443 6.57581 6.74083 6.79963 7.29761 7.40844 8.86327 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.001602 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.815213 B =17476.618115 C =17823.822218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.637 5.637 3 C 0.058 3.942 4 C 0.699 3.301 5 O -0.637 6.637 6 N -0.632 5.632 7 C 0.137 3.863 8 C 0.049 3.951 9 N -0.538 5.538 10 C 0.102 3.898 11 C -0.045 4.045 12 C -0.155 4.155 13 C -0.078 4.078 14 C -0.222 4.222 15 C 0.108 3.892 16 O -0.340 6.340 17 C 0.085 3.915 18 C 0.029 3.971 19 C -0.549 4.549 20 H 0.070 0.930 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.265 1.265 27 C -0.146 4.146 28 C 0.039 3.961 29 C 0.083 3.917 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.125 0.875 45 H 0.058 0.942 46 H 0.059 0.941 47 H -0.001 1.001 48 H -0.002 1.002 49 H 0.267 0.733 50 H 0.128 0.872 51 H 0.034 0.966 52 H 0.112 0.888 53 H 0.138 0.862 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.284 15.698 -12.942 34.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.374 5.374 3 C -0.083 4.083 4 C 0.402 3.598 5 O -0.518 6.518 6 N -0.370 5.370 7 C 0.013 3.987 8 C -0.080 4.080 9 N -0.263 5.263 10 C -0.024 4.024 11 C -0.046 4.046 12 C -0.173 4.173 13 C -0.096 4.096 14 C -0.241 4.241 15 C 0.062 3.938 16 O -0.255 6.255 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.587 4.587 20 H 0.088 0.912 21 C -0.196 4.196 22 N -0.568 5.568 23 Si 0.799 3.201 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.189 1.189 27 C -0.165 4.165 28 C -0.089 4.089 29 C -0.038 4.038 30 H 0.063 0.937 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.076 0.924 50 H 0.146 0.854 51 H 0.052 0.948 52 H 0.130 0.870 53 H 0.155 0.845 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.149 15.607 -12.293 34.454 hybrid contribution 0.527 -1.439 -0.042 1.533 sum -27.623 14.168 -12.335 33.405 Atomic orbital electron populations 1.21598 0.76985 1.04002 1.01155 1.47107 1.07697 1.05176 1.77443 1.22744 0.98595 0.84159 1.02766 1.16200 0.81860 0.84046 0.77716 1.90867 1.68542 1.32617 1.59792 1.47277 1.03834 1.18431 1.67427 1.21586 0.92364 0.87835 0.96870 1.22538 0.95131 0.93512 0.96839 1.62070 1.14972 1.09047 1.40226 1.21071 0.93978 0.94289 0.93085 1.19621 0.93572 0.95565 0.95836 1.21149 1.01499 0.91488 1.03179 1.21161 0.93359 0.99862 0.95233 1.21482 1.01059 0.96467 1.05049 1.19529 0.87079 0.95300 0.91842 1.86084 1.38939 1.35139 1.65299 1.22840 0.94403 0.83564 0.98079 1.18958 0.91174 0.97015 0.93713 1.21375 1.11363 0.92857 1.33079 0.91199 1.26025 0.97492 1.00602 0.95454 1.70110 1.22540 1.27734 1.36449 0.85347 0.77719 0.78442 0.78618 1.18848 1.20696 1.18948 1.20392 0.97417 0.96468 1.02259 1.22679 0.94864 0.95298 0.96047 1.23230 0.96109 0.88053 0.96425 0.93714 0.86952 0.93364 0.89695 0.89066 0.89506 0.91070 0.90737 0.94829 0.89737 0.92286 0.88393 0.84252 0.83526 0.85691 0.92398 0.92280 0.98244 0.98332 0.92436 0.85410 0.94792 0.86979 0.84458 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.17 10.17 127.77 1.30 2.47 16 2 N -0.64 -8.80 3.27 -910.36 -2.98 -11.77 16 3 C 0.06 0.26 8.54 127.77 1.09 1.35 16 4 C 0.70 15.48 8.01 179.05 1.43 16.91 16 5 O -0.64 -20.15 15.94 -3.98 -0.06 -20.21 16 6 N -0.63 -11.43 2.95 -835.04 -2.46 -13.90 16 7 C 0.14 2.87 6.65 86.51 0.58 3.44 16 8 C 0.05 0.94 4.79 86.54 0.41 1.36 16 9 N -0.54 -8.90 4.77 -898.86 -4.29 -13.19 16 10 C 0.10 1.67 5.42 85.56 0.46 2.14 16 11 C -0.05 -1.02 4.12 -19.88 -0.08 -1.10 16 12 C -0.15 -3.26 7.76 22.28 0.17 -3.09 16 13 C -0.08 -1.86 10.04 22.26 0.22 -1.63 16 14 C -0.22 -6.76 9.04 22.37 0.20 -6.56 16 15 C 0.11 3.77 6.69 22.51 0.15 3.92 16 16 O -0.34 -14.58 10.14 -92.36 -0.94 -15.51 16 17 C 0.09 3.80 4.68 71.98 0.34 4.14 16 18 C 0.03 1.58 5.34 29.85 0.16 1.74 16 19 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 20 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 21 C 0.00 0.17 5.46 84.65 0.46 0.64 16 22 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 23 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 27 C -0.15 -4.26 9.64 22.37 0.22 -4.05 16 28 C 0.04 0.43 5.58 86.38 0.48 0.91 16 29 C 0.08 0.83 4.54 86.35 0.39 1.22 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.36 7.82 -2.39 -0.02 0.34 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.09 0.02 6.69 -2.39 -0.02 0.00 16 34 H 0.09 0.07 7.96 -2.38 -0.02 0.05 16 35 H 0.09 0.43 4.98 -2.39 -0.01 0.42 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.84 7.12 -2.39 -0.02 1.82 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.87 5.54 -2.39 -0.01 1.86 16 40 H 0.06 0.81 8.02 -2.39 -0.02 0.79 16 41 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.13 3.84 6.30 -2.91 -0.02 3.82 16 45 H 0.06 2.44 7.66 -2.39 -0.02 2.42 16 46 H 0.06 2.47 7.66 -2.38 -0.02 2.45 16 47 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 50 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 51 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 52 H 0.11 0.73 8.11 -2.39 -0.02 0.71 16 53 H 0.14 0.67 3.56 -9.66 -0.03 0.63 16 54 H 0.08 0.76 7.52 -2.39 -0.02 0.74 16 Total: -1.00 -78.28 421.04 0.67 -77.61 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.86 Total: 14.93 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 8.23 Total: -7.24 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -9.44 Total: -95.28 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -1.00 Total: -35.72 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -78.28 0.67 -77.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097032625.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.754 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds