Wall clock time and date at job start Tue Mar 31 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39632 * 120.15270 * 25.54704 * 3 2 1 5 5 C 1.37942 * 119.84553 * 179.97438 * 4 3 2 6 6 C 1.38359 * 120.15258 * 359.97056 * 5 4 3 7 7 C 1.50705 * 119.84738 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.46901 * 90.00330 * 7 6 5 9 9 C 1.46838 * 111.00174 * 294.21150 * 8 7 6 10 10 C 1.53041 * 109.52385 * 174.15892 * 9 8 7 11 11 C 1.53125 * 109.27549 * 59.18185 * 10 9 8 12 12 N 1.46498 * 109.51993 * 182.44129 * 11 10 9 13 13 C 1.38852 * 119.99730 * 274.67733 * 12 11 10 14 14 C 1.39560 * 119.84620 * 359.73312 * 13 12 11 15 15 C 1.36342 * 120.16268 * 179.71723 * 14 13 12 16 16 C 1.40884 * 119.83775 * 0.55216 * 15 14 13 17 17 C 1.41135 * 120.15658 * 179.69692 * 16 15 14 18 18 H 1.08002 * 119.99731 * 204.61803 * 17 16 15 19 19 C 1.39871 * 120.00108 * 24.62911 * 17 16 15 20 20 N 1.30899 * 119.99620 * 17.96010 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 197.96346 * 19 17 16 22 22 H 1.48497 * 109.47025 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46973 * 119.99644 * 21 19 17 24 24 H 1.48502 * 109.46815 * 239.99375 * 21 19 17 25 25 C 1.40892 * 119.68644 * 359.71809 * 16 15 14 26 26 C 1.36333 * 119.83503 * 0.02562 * 25 16 15 27 27 C 1.53119 * 109.15776 * 302.34328 * 11 10 9 28 28 C 1.46849 * 110.99885 * 169.99962 * 8 7 6 29 29 C 1.38359 * 120.30800 * 0.28624 * 6 5 4 30 30 C 1.37957 * 120.14683 * 359.48031 * 29 6 5 31 31 H 1.08002 * 120.07226 * 359.95832 * 4 3 2 32 32 H 1.08002 * 119.92326 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47123 * 330.00732 * 7 6 5 34 34 H 1.08996 * 109.47119 * 210.00548 * 7 6 5 35 35 H 1.09007 * 109.46333 * 294.17470 * 9 8 7 36 36 H 1.09000 * 109.46802 * 54.14675 * 9 8 7 37 37 H 1.08995 * 109.50657 * 299.23961 * 10 9 8 38 38 H 1.08995 * 109.50440 * 179.11493 * 10 9 8 39 39 H 1.08996 * 109.57670 * 62.28235 * 11 10 9 40 40 H 0.96998 * 120.00343 * 94.68318 * 12 11 10 41 41 H 1.08008 * 119.91969 * 359.97392 * 14 13 12 42 42 H 1.08008 * 120.08166 * 180.27199 * 15 14 13 43 43 H 0.96995 * 119.99567 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.07693 * 179.97438 * 25 16 15 45 45 H 1.08006 * 119.92012 * 179.97438 * 26 25 16 46 46 H 1.08997 * 109.50438 * 297.71478 * 27 11 10 47 47 H 1.09006 * 109.50492 * 177.59868 * 27 11 10 48 48 H 1.09005 * 109.46224 * 305.85758 * 28 8 7 49 49 H 1.09001 * 109.45984 * 65.83431 * 28 8 7 50 50 H 1.07996 * 119.93040 * 179.72084 * 29 6 5 51 51 H 1.08005 * 120.07419 * 180.25498 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.0884 -0.5207 5 6 4.6493 -1.0809 -0.5180 6 6 5.3374 0.0027 -0.0015 7 6 6.8444 0.0039 -0.0025 8 7 7.3327 0.6010 -1.2527 9 6 6.9779 -0.2330 -2.4080 10 6 7.3720 0.4876 -3.6993 11 6 8.8788 0.7601 -3.6864 12 7 9.2525 1.5014 -4.8935 13 6 9.5280 0.8180 -6.0704 14 6 9.4534 -0.5753 -6.0982 15 6 9.7169 -1.2526 -7.2518 16 6 10.0767 -0.5431 -8.4146 17 6 10.3572 -1.2377 -9.6107 18 1 10.9929 -0.7887 -10.3596 19 6 9.8119 -2.5075 -9.8264 20 7 8.7865 -2.9083 -9.1183 21 14 10.5469 -3.6314 -11.1249 22 1 11.6896 -2.9476 -11.7819 23 1 11.0212 -4.8842 -10.4841 24 1 9.5137 -3.9556 -12.1411 25 6 10.1556 0.8631 -8.3776 26 6 9.8842 1.5274 -7.2184 27 6 9.2288 1.5894 -2.4478 28 6 8.7809 0.8369 -1.1928 29 6 4.6483 1.0828 0.5209 30 6 3.2688 1.0906 0.5201 31 1 2.7339 -1.9347 -0.9243 32 1 5.1934 -1.9224 -0.9208 33 1 7.2086 -1.0203 0.0774 34 1 7.2078 0.5859 0.8444 35 1 7.5080 -1.1835 -2.3462 36 1 5.9034 -0.4159 -2.4077 37 1 6.8320 1.4318 -3.7686 38 1 7.1229 -0.1385 -4.5560 39 1 9.4207 -0.1851 -3.6570 40 1 9.3075 2.4695 -4.8706 41 1 9.1821 -1.1183 -5.2048 42 1 9.6545 -2.3306 -7.2730 43 1 8.4085 -3.7890 -9.2676 44 1 10.4312 1.4133 -9.2652 45 1 9.9446 2.6054 -7.1884 46 1 8.7180 2.5510 -2.4973 47 1 10.3062 1.7507 -2.4103 48 1 9.0158 1.4312 -0.3097 49 1 9.3024 -0.1186 -1.1368 50 1 5.1916 1.9234 0.9266 51 1 2.7321 1.9362 0.9244 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097139343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:50 Heat of formation + Delta-G solvation = 65.551979 kcal Electronic energy + Delta-G solvation = -30399.388295 eV Core-core repulsion = 26455.155363 eV Total energy + Delta-G solvation = -3944.232932 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.185 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.90303 -40.14011 -39.18618 -37.63795 -36.68879 -35.13706 -33.57662 -32.11448 -31.85547 -31.60730 -31.26705 -29.92862 -27.45255 -26.06521 -24.51735 -23.92326 -23.52225 -23.01334 -22.39810 -21.64486 -20.57573 -19.87417 -19.13886 -17.78521 -17.24910 -16.77926 -16.72142 -16.61988 -16.19943 -15.68640 -15.49648 -15.47529 -15.09774 -15.05937 -14.88302 -14.64525 -14.45653 -14.38388 -14.10994 -13.97250 -13.82028 -13.68789 -13.54162 -13.33766 -13.13237 -13.01471 -12.90852 -12.74346 -12.58740 -12.40843 -12.28674 -12.07618 -11.99035 -11.85461 -11.62897 -11.53101 -11.31966 -11.11031 -10.99663 -10.22401 -9.88982 -9.76783 -9.37254 -9.19501 -8.53649 -8.11776 -5.98102 -0.20934 0.46725 1.12155 1.20996 1.40250 1.54363 1.58573 1.59157 1.89846 2.28062 2.79088 2.85458 2.87951 2.93338 3.21312 3.79479 3.86469 3.91338 3.93084 4.02166 4.07136 4.18602 4.33041 4.40168 4.43397 4.47641 4.52652 4.53721 4.62704 4.70940 4.73484 4.78725 4.83139 4.90486 4.99546 5.03864 5.07785 5.12885 5.17175 5.19685 5.28974 5.29881 5.32806 5.38962 5.45397 5.48698 5.64618 5.73520 5.84655 5.91350 5.99656 6.14843 6.19510 6.21323 6.41677 6.42573 6.70745 6.91832 7.10598 7.19432 7.37702 8.49711 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.001903 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.695868 B =14707.806447 C =16233.467502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.279 3.721 3 C -0.049 4.049 4 C -0.072 4.072 5 C -0.121 4.121 6 C -0.046 4.046 7 C 0.087 3.913 8 N -0.534 5.534 9 C 0.061 3.939 10 C -0.124 4.124 11 C 0.160 3.840 12 N -0.746 5.746 13 C 0.119 3.881 14 C -0.172 4.172 15 C -0.142 4.142 16 C 0.031 3.969 17 C -0.505 4.505 18 H 0.066 0.934 19 C 0.031 3.969 20 N -0.842 5.842 21 Si 0.975 3.025 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.270 1.270 25 C -0.195 4.195 26 C -0.169 4.169 27 C -0.112 4.112 28 C 0.063 3.937 29 C -0.098 4.098 30 C -0.067 4.067 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.052 0.948 40 H 0.396 0.604 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.281 0.719 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.103 0.897 49 H 0.035 0.965 50 H 0.155 0.845 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 5.809 24.203 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.035 4.035 3 C -0.053 4.053 4 C -0.092 4.092 5 C -0.140 4.140 6 C -0.048 4.048 7 C -0.039 4.039 8 N -0.259 5.259 9 C -0.068 4.068 10 C -0.164 4.164 11 C 0.054 3.946 12 N -0.379 5.379 13 C 0.019 3.981 14 C -0.194 4.194 15 C -0.162 4.162 16 C 0.029 3.971 17 C -0.536 4.536 18 H 0.084 0.916 19 C -0.181 4.181 20 N -0.470 5.470 21 Si 0.797 3.203 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.195 1.195 25 C -0.215 4.215 26 C -0.191 4.191 27 C -0.150 4.150 28 C -0.065 4.065 29 C -0.117 4.117 30 C -0.088 4.088 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.230 0.770 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.135 0.865 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.122 0.878 49 H 0.053 0.947 50 H 0.173 0.827 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.777 5.932 24.280 25.653 hybrid contribution 0.686 -1.259 -1.175 1.854 sum -5.091 4.673 23.105 24.116 Atomic orbital electron populations 1.81282 1.13603 1.09314 1.10672 1.26090 0.93002 0.92269 0.92166 1.16118 0.83037 0.98688 1.07409 1.21279 0.94518 0.96903 0.96505 1.21198 0.93473 0.99396 0.99919 1.20167 0.95902 0.93616 0.95067 1.21199 0.90199 0.99653 0.92899 1.61959 1.14316 1.47533 1.02076 1.22064 1.01256 0.93776 0.89679 1.21982 0.97125 1.00740 0.96551 1.20798 0.93672 0.95226 0.84909 1.44009 1.79373 1.07379 1.07117 1.17432 1.02401 0.90840 0.87401 1.20219 1.08789 0.92822 0.97612 1.20851 1.04207 0.98924 0.92244 1.17829 0.93855 0.91913 0.93551 1.19594 1.28714 1.01910 1.03426 0.91604 1.26593 0.93318 0.99300 0.98866 1.69925 1.18213 1.19826 1.39044 0.85275 0.79123 0.77952 0.77996 1.18492 1.19095 1.19467 1.20744 1.09536 0.93842 0.97402 1.20111 1.08013 0.98367 0.92597 1.21764 1.01483 0.99394 0.92399 1.22070 0.86481 0.99424 0.98479 1.21190 0.92986 0.98441 0.99044 1.21388 0.94700 0.96456 0.96207 0.84328 0.84343 0.92947 0.87251 0.94993 0.89946 0.91702 0.94085 0.93025 0.76980 0.87879 0.88481 0.90858 0.88758 0.86526 0.90369 0.90530 0.87845 0.94669 0.82742 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.48 18.54 19.00 0.35 -11.13 16 2 C 0.28 5.21 15.33 88.33 1.35 6.57 16 3 C -0.05 -0.66 5.73 -21.36 -0.12 -0.79 16 4 C -0.07 -0.88 9.76 22.54 0.22 -0.66 16 5 C -0.12 -1.37 7.85 22.23 0.17 -1.19 16 6 C -0.05 -0.48 4.89 -19.81 -0.10 -0.57 16 7 C 0.09 0.81 5.12 85.56 0.44 1.25 16 8 N -0.53 -7.48 4.65 -900.92 -4.19 -11.67 16 9 C 0.06 1.14 5.15 86.33 0.44 1.59 16 10 C -0.12 -3.14 5.62 30.65 0.17 -2.97 16 11 C 0.16 4.06 2.20 45.07 0.10 4.16 16 12 N -0.75 -22.98 5.22 -318.16 -1.66 -24.64 16 13 C 0.12 4.90 6.65 38.67 0.26 5.16 16 14 C -0.17 -7.92 8.81 22.15 0.20 -7.73 16 15 C -0.14 -7.64 8.64 22.48 0.19 -7.44 16 16 C 0.03 1.75 5.57 -21.27 -0.12 1.63 16 17 C -0.50 -28.57 9.03 23.38 0.21 -28.36 16 18 H 0.07 3.63 7.91 -2.91 -0.02 3.61 16 19 C 0.03 1.63 5.13 85.23 0.44 2.07 16 20 N -0.84 -46.10 10.96 21.82 0.24 -45.86 16 21 Si 0.97 40.34 29.60 68.60 2.03 42.37 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 C -0.20 -9.77 9.74 22.48 0.22 -9.55 16 26 C -0.17 -7.30 9.82 22.15 0.22 -7.08 16 27 C -0.11 -1.94 5.57 30.65 0.17 -1.77 16 28 C 0.06 0.83 5.46 86.32 0.47 1.30 16 29 C -0.10 -0.86 9.68 22.23 0.22 -0.64 16 30 C -0.07 -0.68 9.76 22.54 0.22 -0.46 16 31 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.14 1.34 7.95 -2.91 -0.02 1.32 16 33 H 0.05 0.47 8.06 -2.39 -0.02 0.45 16 34 H 0.11 0.58 7.93 -2.39 -0.02 0.56 16 35 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.08 1.50 5.74 -2.39 -0.01 1.48 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.30 7.73 -2.39 -0.02 1.28 16 39 H 0.05 1.51 6.43 -2.39 -0.02 1.49 16 40 H 0.40 10.54 8.60 -92.71 -0.80 9.74 16 41 H 0.10 4.31 6.06 -2.91 -0.02 4.29 16 42 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 43 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 44 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 45 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.10 0.88 8.02 -2.38 -0.02 0.86 16 49 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 51 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -67.56 415.67 2.30 -65.26 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.15 Total: 31.16 kcal Atomic # 6 Polarization: -50.87 SS G_CDS: 5.37 Total: -45.50 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -5.26 Total: -93.29 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -67.56 2.30 -65.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097139343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.811 kcal (2) G-P(sol) polarization free energy of solvation -67.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds