Wall clock time and date at job start Tue Mar 31 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47050 * 89.99501 * 3 2 1 5 5 H 1.48502 * 109.46893 * 329.99541 * 3 2 1 6 6 H 1.48504 * 109.46776 * 209.99729 * 3 2 1 7 7 C 1.37873 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00305 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46954 * 110.99755 * 293.80151 * 10 9 7 12 12 C 1.53059 * 109.36222 * 176.80955 * 11 10 9 13 13 N 1.46959 * 109.36228 * 58.39870 * 12 11 10 14 14 C 1.46894 * 110.99872 * 176.81004 * 13 12 11 15 15 H 1.09004 * 110.54138 * 303.08210 * 14 13 12 16 16 C 1.54228 * 110.60839 * 66.10173 * 14 13 12 17 17 C 1.51309 * 103.55853 * 118.51811 * 16 14 13 18 18 O 1.21224 * 125.39655 * 179.97438 * 17 16 14 19 19 N 1.33882 * 109.20547 * 359.97438 * 17 16 14 20 20 C 1.40283 * 122.76321 * 180.02562 * 19 17 16 21 21 C 1.38812 * 120.04126 * 67.01603 * 20 19 17 22 22 C 1.38112 * 119.96229 * 179.72175 * 21 20 19 23 23 C 1.38483 * 120.03729 * 0.55659 * 22 21 20 24 24 F 1.35095 * 119.96051 * 179.74465 * 23 22 21 25 25 C 1.38477 * 120.07883 * 359.72236 * 23 22 21 26 26 C 1.38113 * 120.04035 * 359.97438 * 25 23 22 27 27 C 1.33877 * 114.47543 * 0.02562 * 19 17 16 28 28 O 1.21226 * 125.39563 * 179.97438 * 27 19 17 29 29 C 1.46955 * 110.88232 * 300.68116 * 13 12 11 30 30 C 1.46951 * 111.00146 * 169.99852 * 10 9 7 31 31 H 0.97003 * 120.00128 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46786 * 299.99941 * 9 7 2 33 33 H 1.08992 * 109.47551 * 59.99933 * 9 7 2 34 34 H 1.09005 * 109.48744 * 296.77368 * 11 10 9 35 35 H 1.08999 * 109.49264 * 56.84681 * 11 10 9 36 36 H 1.08994 * 109.49073 * 298.43576 * 12 11 10 37 37 H 1.09004 * 109.48527 * 178.36529 * 12 11 10 38 38 H 1.08999 * 110.60719 * 237.03901 * 16 14 13 39 39 H 1.09003 * 110.60550 * 359.97438 * 16 14 13 40 40 H 1.08002 * 120.01712 * 0.02562 * 21 20 19 41 41 H 1.07994 * 119.98414 * 180.29700 * 22 21 20 42 42 H 1.07997 * 119.98041 * 179.97438 * 25 23 22 43 43 H 1.08001 * 120.02297 * 180.02562 * 26 25 23 44 44 H 1.09005 * 109.48598 * 299.35549 * 29 13 12 45 45 H 1.08996 * 109.48692 * 179.29148 * 29 13 12 46 46 H 1.09004 * 109.49028 * 303.15290 * 30 10 9 47 47 H 1.08999 * 109.48847 * 63.22019 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4466 2.6527 -0.7002 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9696 -3.6567 -1.2529 12 6 4.0051 -4.7815 -1.1799 13 7 3.3202 -6.0597 -0.9416 14 6 4.2747 -7.1762 -0.9404 15 1 4.8281 -7.2073 -1.8790 16 6 5.2385 -7.0651 0.2585 17 6 4.9668 -8.3256 1.0501 18 8 5.5191 -8.6390 2.0828 19 7 4.0198 -9.0399 0.4294 20 6 3.5488 -10.2662 0.9217 21 6 2.8292 -10.3084 2.1080 22 6 2.3613 -11.5159 2.5883 23 6 2.6195 -12.6854 1.8931 24 9 2.1655 -13.8662 2.3670 25 6 3.3421 -12.6458 0.7125 26 6 3.8062 -11.4394 0.2260 27 6 3.5593 -8.4877 -0.6999 28 8 2.7049 -8.9632 -1.4164 29 6 2.5561 -6.0186 0.3130 30 6 1.5207 -4.8939 0.2401 31 1 -0.4850 -0.8401 -0.0004 32 1 0.6240 -2.5566 0.8903 33 1 0.6247 -2.5571 -0.8896 34 1 2.2911 -3.8406 -2.0860 35 1 3.4777 -2.7038 -1.4007 36 1 4.7000 -4.5837 -0.3638 37 1 4.5534 -4.8325 -2.1206 38 1 6.2736 -7.0417 -0.0823 39 1 5.0100 -6.1810 0.8538 40 1 2.6311 -9.3970 2.6526 41 1 1.7973 -11.5486 3.5087 42 1 3.5429 -13.5589 0.1718 43 1 4.3694 -11.4089 -0.6950 44 1 3.2346 -5.8347 1.1461 45 1 2.0482 -6.9716 0.4608 46 1 0.9725 -4.8428 1.1808 47 1 0.8258 -5.0917 -0.5760 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100142820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:33 Heat of formation + Delta-G solvation = -47.832735 kcal Electronic energy + Delta-G solvation = -32565.067932 eV Core-core repulsion = 28049.315951 eV Total energy + Delta-G solvation = -4515.751982 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.35870 -42.81986 -39.59662 -38.99523 -38.58404 -36.33059 -35.51625 -33.13344 -31.89583 -31.75811 -30.75653 -29.34658 -27.78319 -26.05095 -24.62083 -23.86498 -23.46243 -23.23100 -22.52395 -21.57802 -20.21637 -19.37528 -18.43150 -18.02077 -17.72653 -16.96000 -16.81203 -16.44574 -16.03245 -15.93811 -15.54420 -15.09934 -14.95605 -14.85772 -14.51635 -14.20879 -14.14714 -14.07686 -13.93968 -13.81971 -13.71037 -13.67412 -13.38447 -12.89799 -12.74817 -12.41741 -12.18639 -11.75240 -11.70857 -11.43072 -11.13086 -11.07633 -10.97761 -10.76551 -10.65249 -10.55289 -10.33630 -10.22972 -10.10753 -9.68588 -9.08138 -8.76786 -8.57832 -8.41778 -7.46204 -6.41636 -4.11426 0.43652 0.67067 1.10078 1.93767 2.21697 2.92376 3.41094 3.43978 3.47531 3.59760 3.72317 3.77727 3.86963 3.99986 4.19767 4.29534 4.45935 4.54310 4.59316 4.65073 4.68011 4.79743 4.94388 5.03954 5.10880 5.23458 5.31243 5.34680 5.41393 5.49815 5.53407 5.55304 5.58873 5.64603 5.70966 5.77328 5.87683 6.16683 6.26730 6.27245 6.32655 6.47184 6.69012 6.73607 6.89223 6.94912 7.02868 7.39148 7.68133 7.86657 8.23446 8.50923 8.81098 9.59636 10.97517 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.002106 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.855665 B =13293.873004 C =13707.872373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.589 4.589 8 H 0.057 0.943 9 C 0.183 3.817 10 N -0.532 5.532 11 C 0.067 3.933 12 C 0.056 3.944 13 N -0.511 5.511 14 C 0.058 3.942 15 H 0.138 0.862 16 C -0.196 4.196 17 C 0.532 3.468 18 O -0.470 6.470 19 N -0.533 5.533 20 C 0.102 3.898 21 C -0.069 4.069 22 C -0.141 4.141 23 C 0.109 3.891 24 F -0.135 7.135 25 C -0.143 4.143 26 C -0.071 4.071 27 C 0.535 3.465 28 O -0.449 6.449 29 C 0.051 3.949 30 C 0.057 3.943 31 H 0.267 0.733 32 H 0.020 0.980 33 H -0.017 1.017 34 H 0.032 0.968 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.806 -23.428 0.057 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.190 4.190 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.214 1.214 7 C -0.628 4.628 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.071 4.071 13 N -0.236 5.236 14 C -0.054 4.054 15 H 0.156 0.844 16 C -0.237 4.237 17 C 0.322 3.678 18 O -0.339 6.339 19 N -0.275 5.275 20 C 0.013 3.987 21 C -0.088 4.088 22 C -0.160 4.160 23 C 0.090 3.910 24 F -0.113 7.113 25 C -0.162 4.162 26 C -0.090 4.090 27 C 0.323 3.677 28 O -0.315 6.315 29 C -0.077 4.077 30 C -0.072 4.072 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.000 1.000 34 H 0.051 0.949 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.395 -22.234 0.216 24.544 hybrid contribution -0.005 -2.007 0.171 2.014 sum 10.390 -24.240 0.387 26.376 Atomic orbital electron populations 1.70767 1.06924 1.30476 1.46789 1.25858 0.96487 1.02753 0.93888 0.83452 0.74548 0.74893 0.76778 1.21445 1.21090 1.21438 1.21953 0.94742 0.90854 1.55235 0.92434 1.19810 0.90644 0.88774 0.94960 1.62236 1.27729 1.02281 1.33425 1.22028 0.95452 0.97457 0.91277 1.22389 0.96520 0.87133 1.01011 1.62329 1.23381 1.02654 1.35275 1.22576 0.92453 0.90233 1.00169 0.84403 1.23335 1.04223 0.97650 0.98529 1.20927 0.77144 0.85353 0.84390 1.90794 1.49284 1.72630 1.21205 1.44518 1.37719 1.19904 1.25334 1.17660 1.00390 0.84566 0.96084 1.21012 0.94571 0.98587 0.94674 1.21047 1.02644 0.90678 1.01653 1.17763 0.97686 0.81302 0.94260 1.91528 1.86962 1.44853 1.87967 1.21016 1.00094 0.99215 0.95868 1.20959 0.98113 0.90238 0.99691 1.20837 0.81484 0.86539 0.78886 1.90789 1.27446 1.66154 1.47108 1.22344 0.96394 0.99108 0.89873 1.22045 0.94567 0.89656 1.00928 0.92254 0.96192 0.99961 0.94942 0.88813 0.93224 0.90055 0.85351 0.85090 0.84363 0.83631 0.83719 0.84454 0.93382 0.91553 0.90721 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.30 13.65 55.43 0.76 -26.55 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.08 24.61 29.90 -169.99 -5.08 19.53 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.59 -16.01 8.47 -34.44 -0.29 -16.30 16 8 H 0.06 1.55 7.13 -52.49 -0.37 1.17 16 9 C 0.18 4.57 4.03 -4.98 -0.02 4.55 16 10 N -0.53 -10.71 4.70 -235.91 -1.11 -11.82 16 11 C 0.07 1.17 5.43 -3.76 -0.02 1.15 16 12 C 0.06 0.71 5.33 -3.76 -0.02 0.69 16 13 N -0.51 -6.34 4.75 -226.74 -1.08 -7.42 16 14 C 0.06 0.54 3.24 -67.92 -0.22 0.32 16 15 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.20 -1.55 5.62 -26.94 -0.15 -1.70 16 17 C 0.53 5.48 7.95 -11.09 -0.09 5.39 16 18 O -0.47 -6.14 17.59 5.61 0.10 -6.04 16 19 N -0.53 -5.52 2.62 -59.40 -0.16 -5.68 16 20 C 0.10 1.06 4.95 -83.56 -0.41 0.65 16 21 C -0.07 -0.67 9.79 -39.42 -0.39 -1.06 16 22 C -0.14 -1.21 10.02 -39.54 -0.40 -1.60 16 23 C 0.11 0.97 7.30 -39.40 -0.29 0.68 16 24 F -0.13 -1.25 17.26 2.25 0.04 -1.21 16 25 C -0.14 -1.15 10.02 -39.54 -0.40 -1.54 16 26 C -0.07 -0.63 9.80 -39.42 -0.39 -1.02 16 27 C 0.54 5.96 5.92 -11.08 -0.07 5.89 16 28 O -0.45 -6.38 17.60 5.60 0.10 -6.28 16 29 C 0.05 0.69 4.95 -3.77 -0.02 0.67 16 30 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 31 H 0.27 7.98 7.22 -40.82 -0.29 7.68 16 32 H 0.02 0.53 7.89 -51.93 -0.41 0.12 16 33 H -0.02 -0.46 7.99 -51.93 -0.41 -0.87 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.79 6.79 -51.93 -0.35 1.44 16 36 H 0.05 0.60 6.85 -51.93 -0.36 0.24 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.13 1.16 5.28 -51.93 -0.27 0.88 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.05 0.63 6.35 -51.93 -0.33 0.30 16 45 H 0.07 0.88 6.93 -51.93 -0.36 0.52 16 46 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -33.29 386.72 -10.07 -43.36 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.19 Total: -1.73 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -3.28 Total: -1.98 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -1.59 Total: -51.47 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.20 Total: -12.33 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.29 -10.07 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100142820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.476 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds