Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47050 * 89.99501 * 3 2 1 5 5 H 1.48502 * 109.46893 * 329.99541 * 3 2 1 6 6 H 1.48504 * 109.46776 * 209.99729 * 3 2 1 7 7 C 1.37873 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00305 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.46954 * 110.99755 * 293.80151 * 10 9 7 12 12 C 1.53059 * 109.36222 * 176.80955 * 11 10 9 13 13 N 1.46959 * 109.36228 * 58.39870 * 12 11 10 14 14 C 1.46894 * 110.99872 * 176.81004 * 13 12 11 15 15 H 1.09004 * 110.54138 * 303.08210 * 14 13 12 16 16 C 1.54228 * 110.60839 * 66.10173 * 14 13 12 17 17 C 1.51309 * 103.55853 * 118.51811 * 16 14 13 18 18 O 1.21224 * 125.39655 * 179.97438 * 17 16 14 19 19 N 1.33882 * 109.20547 * 359.97438 * 17 16 14 20 20 C 1.40283 * 122.76321 * 180.02562 * 19 17 16 21 21 C 1.38812 * 120.04126 * 67.01603 * 20 19 17 22 22 C 1.38112 * 119.96229 * 179.72175 * 21 20 19 23 23 C 1.38483 * 120.03729 * 0.55659 * 22 21 20 24 24 F 1.35095 * 119.96051 * 179.74465 * 23 22 21 25 25 C 1.38477 * 120.07883 * 359.72236 * 23 22 21 26 26 C 1.38113 * 120.04035 * 359.97438 * 25 23 22 27 27 C 1.33877 * 114.47543 * 0.02562 * 19 17 16 28 28 O 1.21226 * 125.39563 * 179.97438 * 27 19 17 29 29 C 1.46955 * 110.88232 * 300.68116 * 13 12 11 30 30 C 1.46951 * 111.00146 * 169.99852 * 10 9 7 31 31 H 0.97003 * 120.00128 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46786 * 299.99941 * 9 7 2 33 33 H 1.08992 * 109.47551 * 59.99933 * 9 7 2 34 34 H 1.09005 * 109.48744 * 296.77368 * 11 10 9 35 35 H 1.08999 * 109.49264 * 56.84681 * 11 10 9 36 36 H 1.08994 * 109.49073 * 298.43576 * 12 11 10 37 37 H 1.09004 * 109.48527 * 178.36529 * 12 11 10 38 38 H 1.08999 * 110.60719 * 237.03901 * 16 14 13 39 39 H 1.09003 * 110.60550 * 359.97438 * 16 14 13 40 40 H 1.08002 * 120.01712 * 0.02562 * 21 20 19 41 41 H 1.07994 * 119.98414 * 180.29700 * 22 21 20 42 42 H 1.07997 * 119.98041 * 179.97438 * 25 23 22 43 43 H 1.08001 * 120.02297 * 180.02562 * 26 25 23 44 44 H 1.09005 * 109.48598 * 299.35549 * 29 13 12 45 45 H 1.08996 * 109.48692 * 179.29148 * 29 13 12 46 46 H 1.09004 * 109.49028 * 303.15290 * 30 10 9 47 47 H 1.08999 * 109.48847 * 63.22019 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4466 2.6527 -0.7002 6 1 3.5468 1.4401 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9696 -3.6567 -1.2529 12 6 4.0051 -4.7815 -1.1799 13 7 3.3202 -6.0597 -0.9416 14 6 4.2747 -7.1762 -0.9404 15 1 4.8281 -7.2073 -1.8790 16 6 5.2385 -7.0651 0.2585 17 6 4.9668 -8.3256 1.0501 18 8 5.5191 -8.6390 2.0828 19 7 4.0198 -9.0399 0.4294 20 6 3.5488 -10.2662 0.9217 21 6 2.8292 -10.3084 2.1080 22 6 2.3613 -11.5159 2.5883 23 6 2.6195 -12.6854 1.8931 24 9 2.1655 -13.8662 2.3670 25 6 3.3421 -12.6458 0.7125 26 6 3.8062 -11.4394 0.2260 27 6 3.5593 -8.4877 -0.6999 28 8 2.7049 -8.9632 -1.4164 29 6 2.5561 -6.0186 0.3130 30 6 1.5207 -4.8939 0.2401 31 1 -0.4850 -0.8401 -0.0004 32 1 0.6240 -2.5566 0.8903 33 1 0.6247 -2.5571 -0.8896 34 1 2.2911 -3.8406 -2.0860 35 1 3.4777 -2.7038 -1.4007 36 1 4.7000 -4.5837 -0.3638 37 1 4.5534 -4.8325 -2.1206 38 1 6.2736 -7.0417 -0.0823 39 1 5.0100 -6.1810 0.8538 40 1 2.6311 -9.3970 2.6526 41 1 1.7973 -11.5486 3.5087 42 1 3.5429 -13.5589 0.1718 43 1 4.3694 -11.4089 -0.6950 44 1 3.2346 -5.8347 1.1461 45 1 2.0482 -6.9716 0.4608 46 1 0.9725 -4.8428 1.1808 47 1 0.8258 -5.0917 -0.5760 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100142820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = -70.921192 kcal Electronic energy + Delta-G solvation = -32566.069123 eV Core-core repulsion = 28049.315951 eV Total energy + Delta-G solvation = -4516.753172 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.06118 -43.63225 -40.54995 -39.84571 -39.61663 -37.45200 -36.66119 -34.93999 -33.00346 -32.42138 -32.01852 -30.25394 -29.08657 -27.36489 -26.01086 -24.73277 -24.41381 -24.19940 -23.88697 -22.88003 -20.98882 -20.62125 -19.22172 -18.94546 -18.74702 -18.49380 -17.84321 -17.24607 -16.91112 -16.72587 -16.63543 -16.13709 -16.00212 -15.76383 -15.66386 -15.61660 -15.47213 -15.28508 -14.88738 -14.82154 -14.78138 -14.46422 -14.26338 -14.03464 -13.81778 -13.59068 -13.39103 -13.08828 -13.01637 -12.75042 -12.48357 -12.42982 -12.29027 -12.11999 -11.89891 -11.84702 -11.67344 -11.42841 -11.20726 -10.77504 -10.56144 -10.34822 -9.80370 -9.56728 -9.17353 -8.66559 -6.37650 -0.27291 0.00774 0.26344 1.16006 1.42948 1.56340 1.65282 1.82552 2.23045 2.57666 2.59821 2.98506 3.04935 3.08108 3.14494 3.18913 3.25141 3.54864 3.66363 3.75048 3.86177 3.92135 4.01053 4.02259 4.13272 4.19043 4.21053 4.37908 4.52936 4.55323 4.63854 4.66802 4.68378 4.78728 4.79927 4.84468 4.89047 4.90581 4.92368 5.02265 5.08426 5.11704 5.48820 5.60299 5.69138 5.71144 5.82496 5.99127 6.08739 6.35233 6.40921 6.57574 6.60526 7.43732 8.72281 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.002106 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.855665 B =13293.873004 C =13707.872373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.041 4.041 3 Si 1.124 2.876 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.593 4.593 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.534 5.534 11 C 0.063 3.937 12 C 0.070 3.930 13 N -0.525 5.525 14 C 0.066 3.934 15 H 0.175 0.825 16 C -0.182 4.182 17 C 0.534 3.466 18 O -0.500 6.500 19 N -0.530 5.530 20 C 0.077 3.923 21 C -0.084 4.084 22 C -0.141 4.141 23 C 0.099 3.901 24 F -0.138 7.138 25 C -0.138 4.138 26 C -0.077 4.077 27 C 0.537 3.463 28 O -0.484 6.484 29 C 0.064 3.936 30 C 0.056 3.944 31 H 0.252 0.748 32 H -0.004 1.004 33 H -0.047 1.047 34 H 0.014 0.986 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.169 0.831 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.151 0.849 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.868 -24.106 -0.479 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.237 4.237 3 Si 0.945 3.055 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.631 4.631 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.258 5.258 11 C -0.065 4.065 12 C -0.057 4.057 13 N -0.251 5.251 14 C -0.046 4.046 15 H 0.192 0.808 16 C -0.223 4.223 17 C 0.325 3.675 18 O -0.372 6.372 19 N -0.271 5.271 20 C -0.011 4.011 21 C -0.103 4.103 22 C -0.160 4.160 23 C 0.080 3.920 24 F -0.116 7.116 25 C -0.157 4.157 26 C -0.096 4.096 27 C 0.326 3.674 28 O -0.353 6.353 29 C -0.064 4.064 30 C -0.072 4.072 31 H 0.061 0.939 32 H 0.014 0.986 33 H -0.029 1.029 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.186 0.814 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.180 0.820 42 H 0.186 0.814 43 H 0.169 0.831 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.481 -22.953 -0.317 26.621 hybrid contribution -1.013 -1.919 0.347 2.198 sum 12.468 -24.872 0.029 27.822 Atomic orbital electron populations 1.70905 1.08137 1.29596 1.49239 1.27456 0.96482 1.06902 0.92907 0.82844 0.74269 0.70685 0.77675 1.20063 1.21309 1.18735 1.22269 0.95065 0.91717 1.54051 0.91955 1.19510 0.90824 0.90528 0.92400 1.62181 1.26547 1.02087 1.35030 1.22086 0.95895 0.99217 0.89305 1.22291 0.94711 0.85105 1.03600 1.62200 1.24795 1.03608 1.34466 1.22700 0.91722 0.87557 1.02578 0.80759 1.23381 1.06010 0.95815 0.97066 1.21343 0.76371 0.85821 0.83928 1.90787 1.50340 1.73463 1.22591 1.44561 1.37503 1.19938 1.25061 1.17987 1.01211 0.85191 0.96730 1.21115 0.95195 0.99069 0.94918 1.21242 1.02321 0.90301 1.02179 1.17931 0.98107 0.81245 0.94766 1.91520 1.87067 1.44985 1.88066 1.21289 0.98982 0.99911 0.95476 1.21161 0.98277 0.90043 1.00092 1.21155 0.80794 0.86980 0.78427 1.90779 1.29044 1.67191 1.48259 1.22124 0.95796 0.97289 0.91172 1.22085 0.95574 0.89625 0.99964 0.93890 0.98627 1.02925 0.96752 0.90419 0.91689 0.86396 0.81387 0.85330 0.84375 0.82007 0.81354 0.83109 0.92318 0.91207 0.91268 0.96372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.65 21.45 0.29 -57.63 16 2 C -0.04 -2.30 5.46 84.65 0.46 -1.83 16 3 Si 1.12 48.97 29.90 68.60 2.05 51.02 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.59 -32.69 8.47 25.60 0.22 -32.48 16 8 H 0.06 3.32 7.13 -2.91 -0.02 3.30 16 9 C 0.19 10.10 4.03 85.56 0.34 10.44 16 10 N -0.53 -21.79 4.70 -900.29 -4.23 -26.03 16 11 C 0.06 2.19 5.43 86.31 0.47 2.66 16 12 C 0.07 1.52 5.33 86.31 0.46 1.98 16 13 N -0.53 -11.61 4.75 -871.26 -4.14 -15.75 16 14 C 0.07 0.97 3.24 44.78 0.15 1.11 16 15 H 0.18 1.39 8.14 -2.38 -0.02 1.37 16 16 C -0.18 -2.12 5.62 30.46 0.17 -1.95 16 17 C 0.53 9.75 7.95 87.99 0.70 10.45 16 18 O -0.50 -12.29 17.59 -2.86 -0.05 -12.34 16 19 N -0.53 -10.08 2.62 -579.67 -1.52 -11.59 16 20 C 0.08 1.55 4.95 38.06 0.19 1.73 16 21 C -0.08 -1.60 9.79 22.38 0.22 -1.38 16 22 C -0.14 -2.34 10.02 22.30 0.22 -2.12 16 23 C 0.10 1.66 7.30 22.39 0.16 1.82 16 24 F -0.14 -2.42 17.26 44.97 0.78 -1.65 16 25 C -0.14 -2.01 10.02 22.30 0.22 -1.79 16 26 C -0.08 -1.27 9.80 22.38 0.22 -1.05 16 27 C 0.54 10.83 5.92 87.99 0.52 11.35 16 28 O -0.48 -13.17 17.60 -2.86 -0.05 -13.22 16 29 C 0.06 1.66 4.95 86.31 0.43 2.09 16 30 C 0.06 1.97 5.61 86.31 0.48 2.45 16 31 H 0.25 15.83 7.22 -92.71 -0.67 15.16 16 32 H 0.00 -0.24 7.89 -2.39 -0.02 -0.26 16 33 H -0.05 -2.66 7.99 -2.39 -0.02 -2.68 16 34 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.08 2.92 6.79 -2.39 -0.02 2.90 16 36 H 0.06 1.28 6.85 -2.39 -0.02 1.26 16 37 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.17 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.13 1.72 5.28 -2.39 -0.01 1.71 16 40 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.06 1.41 6.35 -2.38 -0.02 1.40 16 45 H 0.07 1.78 6.93 -2.39 -0.02 1.76 16 46 H 0.07 2.44 8.07 -2.38 -0.02 2.42 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.70 386.72 -0.13 -75.82 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.11 Total: 7.88 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.64 Total: 3.49 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -9.60 Total: -111.00 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.10 Total: -25.57 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.05 Total: 51.02 kcal Total: -75.70 -0.13 -75.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100142820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.903 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds