Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36054 * 116.99623 * 2 1 4 4 C 1.37999 * 119.81229 * 0.26102 * 3 2 1 5 5 C 1.39829 * 119.99611 * 180.25186 * 4 3 2 6 6 C 1.43192 * 120.18670 * 179.75846 * 5 4 3 7 7 N 5.83934 * 81.07575 * 0.02562 * 2 1 3 8 8 C 1.41213 * 119.62917 * 359.73993 * 5 4 3 9 9 N 1.36289 * 120.18708 * 180.02562 * 8 5 4 10 10 C 1.31530 * 119.99913 * 94.70935 * 9 8 5 11 11 S 1.76199 * 119.99635 * 173.98980 * 10 9 8 12 12 C 1.76195 * 100.00313 * 0.02562 * 11 10 9 13 13 H 1.08004 * 120.00024 * 359.97438 * 12 11 10 14 14 C 1.38771 * 120.00322 * 179.97438 * 12 11 10 15 15 N 1.31534 * 120.00196 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99839 * 0.02562 * 14 12 11 17 17 H 1.48509 * 109.46852 * 89.99690 * 16 14 12 18 18 H 1.48494 * 109.47003 * 209.99771 * 16 14 12 19 19 H 1.48496 * 109.46836 * 329.99926 * 16 14 12 20 20 N 1.37388 * 119.99991 * 353.99320 * 10 9 8 21 21 C 1.47017 * 125.64828 * 4.97917 * 20 10 9 22 22 C 1.54320 * 107.27827 * 180.96928 * 21 20 10 23 23 C 1.55161 * 102.85922 * 22.52810 * 22 21 20 24 24 C 1.47428 * 125.64568 * 185.28921 * 20 10 9 25 25 C 1.39577 * 119.63298 * 359.97438 * 8 5 4 26 26 C 1.38265 * 119.99056 * 0.02562 * 25 8 5 27 27 O 1.35854 * 119.81231 * 179.97438 * 26 25 8 28 28 C 1.42892 * 116.99879 * 5.11281 * 27 26 25 29 29 H 1.09005 * 109.46777 * 60.00585 * 1 2 3 30 30 H 1.08999 * 109.46547 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47282 * 300.00194 * 1 2 3 32 32 H 1.07998 * 120.00394 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99738 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.88746 * 300.50969 * 21 20 10 35 35 H 1.08995 * 109.88562 * 61.68172 * 21 20 10 36 36 H 1.08992 * 110.92229 * 264.11557 * 22 21 20 37 37 H 1.08995 * 110.59211 * 140.78419 * 22 21 20 38 38 H 1.09001 * 111.00267 * 206.23125 * 23 22 21 39 39 H 1.08996 * 111.00538 * 82.37479 * 23 22 21 40 40 H 1.08998 * 110.36227 * 274.67098 * 24 20 10 41 41 H 1.09000 * 110.36642 * 36.89038 * 24 20 10 42 42 H 1.07994 * 120.00914 * 180.02562 * 25 8 5 43 43 H 1.08998 * 109.47328 * 175.02920 * 28 27 26 44 44 H 1.09005 * 109.47299 * 55.03079 * 28 27 26 45 45 H 1.09003 * 109.47435 * 295.02898 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2912 2.3671 0.0055 5 6 1.9219 3.6151 0.0002 6 6 1.1420 4.8160 0.0006 7 7 0.5232 5.7687 0.0026 8 6 3.3323 3.6845 -0.0052 9 7 3.9588 4.8948 -0.0099 10 6 4.3484 5.4380 1.1229 11 16 5.2968 6.9230 1.1075 12 6 5.4065 7.1980 -0.6294 13 1 4.9396 6.5074 -1.3161 14 6 6.0929 8.3019 -1.1152 15 7 6.1753 8.5069 -2.4118 16 14 6.9012 9.4961 0.0724 17 1 8.2947 9.0592 0.3419 18 1 6.9153 10.8553 -0.5253 19 1 6.1360 9.5228 1.3448 20 7 4.0159 4.8476 2.3180 21 6 3.3226 3.5606 2.4743 22 6 3.1441 3.3170 3.9876 23 6 3.2331 4.7480 4.5807 24 6 4.2897 5.4027 3.6561 25 6 4.0812 2.5067 -0.0046 26 6 3.4415 1.2809 0.0007 27 8 4.1741 0.1368 0.0007 28 6 5.5922 0.2745 0.1086 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2129 2.3071 0.0093 33 1 6.6554 9.2784 -2.7513 34 1 2.3488 3.6025 1.9864 35 1 3.9229 2.7610 2.0404 36 1 3.9439 2.6875 4.3775 37 1 2.1691 2.8747 4.1923 38 1 3.5803 4.7219 5.6136 39 1 2.2752 5.2626 4.5050 40 1 5.2954 5.1343 3.9796 41 1 4.1707 6.4861 3.6489 42 1 5.1602 2.5527 -0.0083 43 1 6.0483 -0.7125 0.1854 44 1 5.8342 0.8567 0.9978 45 1 5.9761 0.7844 -0.7751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100918098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = 31.742028 kcal Electronic energy + Delta-G solvation = -30872.411415 eV Core-core repulsion = 26790.490135 eV Total energy + Delta-G solvation = -4081.921279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95572 -39.23804 -38.47683 -37.36957 -35.73252 -34.67285 -32.62587 -31.18040 -30.63005 -29.23279 -28.78485 -27.33618 -27.26363 -25.75295 -24.27010 -22.70190 -21.93015 -21.32318 -20.38970 -19.09995 -18.17374 -17.81953 -16.96911 -16.56768 -16.27766 -16.06501 -15.88604 -15.32898 -15.26481 -15.09179 -14.53646 -13.97967 -13.82374 -13.70536 -13.54458 -13.35458 -13.16907 -13.03658 -12.78572 -12.60307 -12.43103 -12.36181 -12.01230 -11.79332 -11.58601 -11.50658 -11.40045 -11.37372 -11.28746 -11.20684 -10.99216 -10.89121 -10.79520 -10.58326 -10.08795 -9.48014 -9.21345 -9.08373 -8.40091 -7.79339 -7.36222 -7.20188 -6.40149 -4.23426 0.95029 1.40364 2.22591 2.57065 3.11690 3.12157 3.16657 3.19912 3.19965 3.21671 3.29775 3.51165 4.00898 4.10019 4.29801 4.42334 4.57828 4.61818 4.81827 4.88133 4.96500 4.98647 4.99686 5.08647 5.15898 5.20447 5.29349 5.33285 5.37664 5.40412 5.43116 5.50100 5.65734 5.66825 5.70683 5.80838 5.89380 5.96519 5.97419 6.10759 6.16242 6.44662 6.58258 6.94270 7.01202 7.50156 7.53585 7.85086 7.97265 8.65985 8.76784 8.98802 10.68417 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.003721 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.123115 B = 7522.615091 C = 7925.426978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.059 3.941 4 C -0.110 4.110 5 C -0.085 4.085 6 C 0.270 3.730 7 N -0.427 5.427 8 C 0.239 3.761 9 N -0.587 5.587 10 C 0.443 3.557 11 S 0.034 5.966 12 C -0.520 4.520 13 H 0.128 0.872 14 C 0.101 3.899 15 N -0.861 5.861 16 Si 0.840 3.160 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.239 1.239 20 N -0.627 5.627 21 C 0.083 3.917 22 C -0.130 4.130 23 C -0.131 4.131 24 C 0.104 3.896 25 C -0.220 4.220 26 C 0.151 3.849 27 O -0.304 6.304 28 C 0.024 3.976 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.274 0.726 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -16.516 12.902 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.013 3.987 4 C -0.132 4.132 5 C -0.092 4.092 6 C -0.045 4.045 7 N -0.103 5.103 8 C 0.129 3.871 9 N -0.319 5.319 10 C 0.071 3.929 11 S 0.269 5.731 12 C -0.668 4.668 13 H 0.145 0.855 14 C -0.110 4.110 15 N -0.496 5.496 16 Si 0.665 3.335 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.164 1.164 20 N -0.350 5.350 21 C -0.041 4.041 22 C -0.168 4.168 23 C -0.170 4.170 24 C -0.020 4.020 25 C -0.242 4.242 26 C 0.104 3.896 27 O -0.216 6.216 28 C -0.071 4.071 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.160 -14.393 12.771 19.922 hybrid contribution 0.050 -0.425 -0.388 0.578 sum -5.109 -14.818 12.384 19.976 Atomic orbital electron populations 1.23027 0.79085 1.03659 1.01176 1.86163 1.20488 1.25458 1.89974 1.17680 0.88650 0.84759 1.07586 1.20745 0.99613 0.89669 1.03149 1.16085 0.90942 0.87235 1.14980 1.25259 0.92988 0.92737 0.93475 1.81150 1.10197 1.09277 1.09710 1.18484 0.89359 0.90818 0.88450 1.68716 1.31980 1.11452 1.19713 1.24913 0.91113 0.96471 0.80403 1.83109 1.56825 1.17532 1.15645 1.22668 1.41083 1.15608 0.87434 0.85463 1.24709 0.94817 0.96436 0.95017 1.69869 1.39636 1.28517 1.11576 0.87052 0.81613 0.82198 0.82674 1.18794 1.19095 1.16393 1.47915 1.61682 1.21578 1.03799 1.22943 0.98180 0.86129 0.96890 1.22641 1.02479 0.97193 0.94482 1.22750 0.99625 0.95777 0.98813 1.22285 0.98435 0.99298 0.81986 1.21364 1.00804 0.89920 1.12159 1.18224 0.88098 0.85576 0.97737 1.86118 1.19392 1.28262 1.87842 1.23115 0.78495 1.03747 1.01734 0.92827 0.88452 0.92896 0.84368 0.91576 0.90437 0.90849 0.90748 0.90380 0.90000 0.90760 0.91497 0.90277 0.83915 0.88235 0.92517 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.83 10.27 -34.74 -0.36 -4.18 16 3 C 0.06 0.80 6.70 -39.14 -0.26 0.54 16 4 C -0.11 -1.50 8.49 -39.07 -0.33 -1.83 16 5 C -0.08 -1.44 3.45 -106.25 -0.37 -1.81 16 6 C 0.27 5.27 14.70 -22.48 -0.33 4.94 16 7 N -0.43 -9.11 18.54 41.84 0.78 -8.33 16 8 C 0.24 4.38 3.56 -84.26 -0.30 4.08 16 9 N -0.59 -12.95 7.91 -10.38 -0.08 -13.03 16 10 C 0.44 9.11 7.95 -87.33 -0.69 8.42 16 11 S 0.03 0.77 18.65 -107.50 -2.01 -1.24 16 12 C -0.52 -14.44 9.80 30.93 0.30 -14.14 16 13 H 0.13 3.96 6.79 -52.48 -0.36 3.60 16 14 C 0.10 2.79 5.50 -17.48 -0.10 2.69 16 15 N -0.86 -25.23 13.96 55.49 0.77 -24.46 16 16 Si 0.84 19.41 27.74 -169.99 -4.71 14.70 16 17 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.24 -5.25 6.74 56.52 0.38 -4.86 16 20 N -0.63 -10.21 3.41 -171.08 -0.58 -10.79 16 21 C 0.08 1.14 5.09 -3.07 -0.02 1.12 16 22 C -0.13 -1.31 6.95 -24.90 -0.17 -1.48 16 23 C -0.13 -1.32 7.08 -24.58 -0.17 -1.49 16 24 C 0.10 1.35 6.64 -2.52 -0.02 1.34 16 25 C -0.22 -3.47 6.43 -39.07 -0.25 -3.72 16 26 C 0.15 2.17 6.43 -39.04 -0.25 1.92 16 27 O -0.30 -4.02 10.26 -34.11 -0.35 -4.37 16 28 C 0.02 0.24 9.81 101.05 0.99 1.23 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.37 7.64 -51.93 -0.40 -0.02 16 32 H 0.14 1.52 6.25 -52.49 -0.33 1.19 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.16 4.51 -51.93 -0.23 0.93 16 35 H 0.07 1.02 4.97 -51.93 -0.26 0.76 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 42 H 0.14 2.20 6.28 -52.49 -0.33 1.87 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.52 7.59 -51.93 -0.39 0.13 16 45 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -33.31 382.48 -7.37 -40.68 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.61 Total: 2.25 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.98 Total: 3.01 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.88 Total: -56.61 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.71 Total: -8.55 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.01 Total: -1.24 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.31 -7.37 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100918098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.420 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds