Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36054 * 116.99623 * 2 1 4 4 C 1.37999 * 119.81229 * 0.26102 * 3 2 1 5 5 C 1.39829 * 119.99611 * 180.25186 * 4 3 2 6 6 C 1.43192 * 120.18670 * 179.75846 * 5 4 3 7 7 N 5.83934 * 81.07575 * 0.02562 * 2 1 3 8 8 C 1.41213 * 119.62917 * 359.73993 * 5 4 3 9 9 N 1.36289 * 120.18708 * 180.02562 * 8 5 4 10 10 C 1.31530 * 119.99913 * 94.70935 * 9 8 5 11 11 S 1.76199 * 119.99635 * 173.98980 * 10 9 8 12 12 C 1.76195 * 100.00313 * 0.02562 * 11 10 9 13 13 H 1.08004 * 120.00024 * 359.97438 * 12 11 10 14 14 C 1.38771 * 120.00322 * 179.97438 * 12 11 10 15 15 N 1.31534 * 120.00196 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99839 * 0.02562 * 14 12 11 17 17 H 1.48509 * 109.46852 * 89.99690 * 16 14 12 18 18 H 1.48494 * 109.47003 * 209.99771 * 16 14 12 19 19 H 1.48496 * 109.46836 * 329.99926 * 16 14 12 20 20 N 1.37388 * 119.99991 * 353.99320 * 10 9 8 21 21 C 1.47017 * 125.64828 * 4.97917 * 20 10 9 22 22 C 1.54320 * 107.27827 * 180.96928 * 21 20 10 23 23 C 1.55161 * 102.85922 * 22.52810 * 22 21 20 24 24 C 1.47428 * 125.64568 * 185.28921 * 20 10 9 25 25 C 1.39577 * 119.63298 * 359.97438 * 8 5 4 26 26 C 1.38265 * 119.99056 * 0.02562 * 25 8 5 27 27 O 1.35854 * 119.81231 * 179.97438 * 26 25 8 28 28 C 1.42892 * 116.99879 * 5.11281 * 27 26 25 29 29 H 1.09005 * 109.46777 * 60.00585 * 1 2 3 30 30 H 1.08999 * 109.46547 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47282 * 300.00194 * 1 2 3 32 32 H 1.07998 * 120.00394 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99738 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.88746 * 300.50969 * 21 20 10 35 35 H 1.08995 * 109.88562 * 61.68172 * 21 20 10 36 36 H 1.08992 * 110.92229 * 264.11557 * 22 21 20 37 37 H 1.08995 * 110.59211 * 140.78419 * 22 21 20 38 38 H 1.09001 * 111.00267 * 206.23125 * 23 22 21 39 39 H 1.08996 * 111.00538 * 82.37479 * 23 22 21 40 40 H 1.08998 * 110.36227 * 274.67098 * 24 20 10 41 41 H 1.09000 * 110.36642 * 36.89038 * 24 20 10 42 42 H 1.07994 * 120.00914 * 180.02562 * 25 8 5 43 43 H 1.08998 * 109.47328 * 175.02920 * 28 27 26 44 44 H 1.09005 * 109.47299 * 55.03079 * 28 27 26 45 45 H 1.09003 * 109.47435 * 295.02898 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2912 2.3671 0.0055 5 6 1.9219 3.6151 0.0002 6 6 1.1420 4.8160 0.0006 7 7 0.5232 5.7687 0.0026 8 6 3.3323 3.6845 -0.0052 9 7 3.9588 4.8948 -0.0099 10 6 4.3484 5.4380 1.1229 11 16 5.2968 6.9230 1.1075 12 6 5.4065 7.1980 -0.6294 13 1 4.9396 6.5074 -1.3161 14 6 6.0929 8.3019 -1.1152 15 7 6.1753 8.5069 -2.4118 16 14 6.9012 9.4961 0.0724 17 1 8.2947 9.0592 0.3419 18 1 6.9153 10.8553 -0.5253 19 1 6.1360 9.5228 1.3448 20 7 4.0159 4.8476 2.3180 21 6 3.3226 3.5606 2.4743 22 6 3.1441 3.3170 3.9876 23 6 3.2331 4.7480 4.5807 24 6 4.2897 5.4027 3.6561 25 6 4.0812 2.5067 -0.0046 26 6 3.4415 1.2809 0.0007 27 8 4.1741 0.1368 0.0007 28 6 5.5922 0.2745 0.1086 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2129 2.3071 0.0093 33 1 6.6554 9.2784 -2.7513 34 1 2.3488 3.6025 1.9864 35 1 3.9229 2.7610 2.0404 36 1 3.9439 2.6875 4.3775 37 1 2.1691 2.8747 4.1923 38 1 3.5803 4.7219 5.6136 39 1 2.2752 5.2626 4.5050 40 1 5.2954 5.1343 3.9796 41 1 4.1707 6.4861 3.6489 42 1 5.1602 2.5527 -0.0083 43 1 6.0483 -0.7125 0.1854 44 1 5.8342 0.8567 0.9978 45 1 5.9761 0.7844 -0.7751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100918098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = 10.656761 kcal Electronic energy + Delta-G solvation = -30873.325741 eV Core-core repulsion = 26790.490135 eV Total energy + Delta-G solvation = -4082.835605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13763 -40.37355 -39.46528 -38.55606 -37.22572 -35.94940 -34.72785 -32.33020 -31.82560 -30.36259 -29.80114 -28.38445 -28.05537 -27.79782 -25.56977 -23.83973 -23.08699 -22.26724 -21.68174 -20.26800 -19.87990 -19.03695 -18.09853 -17.92314 -17.48952 -17.18181 -17.05179 -16.98501 -16.51492 -16.13213 -15.54654 -15.17146 -15.04973 -14.99269 -14.94487 -14.68485 -14.37798 -14.31763 -14.07754 -13.80524 -13.71948 -13.58311 -13.32044 -13.21990 -13.09793 -12.97566 -12.59312 -12.47518 -12.37230 -12.20893 -12.09558 -12.06160 -12.02422 -11.68975 -11.55063 -11.20374 -11.03008 -10.74888 -9.64519 -9.31081 -8.93963 -8.52864 -8.44166 -6.33853 -0.30596 0.18660 0.58430 1.04234 1.29519 1.35968 1.44295 1.61721 1.83018 2.07596 2.19401 2.21767 2.34877 2.53564 2.69349 2.87793 2.94840 3.56840 3.69107 3.74017 3.89250 4.06364 4.07685 4.15087 4.31324 4.37413 4.41743 4.44733 4.50519 4.51176 4.54388 4.66492 4.72407 4.76841 4.80986 4.87062 4.88375 4.95971 5.02272 5.08980 5.26327 5.32322 5.35197 5.72984 5.77114 6.02492 6.16358 6.45261 6.45579 6.52701 6.87555 7.23943 8.63130 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.003721 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.123115 B = 7522.615091 C = 7925.426978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.070 3.930 4 C -0.093 4.093 5 C -0.100 4.100 6 C 0.283 3.717 7 N -0.473 5.473 8 C 0.217 3.783 9 N -0.630 5.630 10 C 0.437 3.563 11 S 0.048 5.952 12 C -0.539 4.539 13 H 0.078 0.922 14 C 0.045 3.955 15 N -0.914 5.914 16 Si 0.908 3.092 17 H -0.249 1.249 18 H -0.260 1.260 19 H -0.221 1.221 20 N -0.623 5.623 21 C 0.077 3.923 22 C -0.120 4.120 23 C -0.120 4.120 24 C 0.091 3.909 25 C -0.219 4.219 26 C 0.161 3.839 27 O -0.308 6.308 28 C 0.017 3.983 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.278 0.722 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.063 0.937 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -18.987 16.178 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.024 3.976 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.030 4.030 7 N -0.150 5.150 8 C 0.108 3.892 9 N -0.362 5.362 10 C 0.062 3.938 11 S 0.282 5.718 12 C -0.688 4.688 13 H 0.096 0.904 14 C -0.161 4.161 15 N -0.551 5.551 16 Si 0.727 3.273 17 H -0.173 1.173 18 H -0.184 1.184 19 H -0.144 1.144 20 N -0.345 5.345 21 C -0.047 4.047 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.032 4.032 25 C -0.242 4.242 26 C 0.112 3.888 27 O -0.221 6.221 28 C -0.077 4.077 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.185 0.815 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.082 0.918 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.545 -16.920 16.084 23.994 hybrid contribution 0.054 -0.013 -1.423 1.424 sum -5.492 -16.933 14.661 23.061 Atomic orbital electron populations 1.23404 0.76642 1.05816 1.02246 1.86174 1.22973 1.24382 1.89523 1.17708 0.88527 0.85346 1.05988 1.20895 1.00941 0.88118 1.01490 1.16136 0.90249 0.87501 1.16894 1.25746 0.92243 0.92814 0.92228 1.81133 1.11810 1.10349 1.11714 1.18536 0.89975 0.90277 0.90405 1.68747 1.32556 1.13431 1.21469 1.24625 0.91136 0.95909 0.82104 1.82447 1.58873 1.19666 1.10794 1.22676 1.40679 1.14974 0.90429 0.90377 1.25709 0.95243 0.98301 0.96877 1.70006 1.41284 1.29712 1.14071 0.86030 0.81109 0.79361 0.80766 1.17313 1.18447 1.14393 1.48110 1.60518 1.22282 1.03563 1.23069 0.97130 0.84704 0.99784 1.22676 1.04300 0.97562 0.91225 1.22743 0.98232 0.95051 0.99752 1.22625 1.00628 0.99008 0.80981 1.21191 1.00509 0.89757 1.12708 1.18266 0.88744 0.85335 0.96416 1.86126 1.21045 1.27579 1.87336 1.23389 0.76744 1.05783 1.01804 0.92191 0.85943 0.91312 0.81529 0.91246 0.91730 0.91055 0.88748 0.88541 0.86600 0.91492 0.89791 0.91380 0.84267 0.85162 0.91837 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -6.91 10.27 -79.98 -0.82 -7.73 16 3 C 0.07 1.77 6.70 22.56 0.15 1.92 16 4 C -0.09 -2.37 8.49 22.60 0.19 -2.18 16 5 C -0.10 -3.43 3.45 -20.92 -0.07 -3.50 16 6 C 0.28 11.34 14.70 88.33 1.30 12.64 16 7 N -0.47 -20.89 18.54 19.00 0.35 -20.54 16 8 C 0.22 8.17 3.56 39.51 0.14 8.31 16 9 N -0.63 -29.17 7.91 -186.74 -1.48 -30.65 16 10 C 0.44 18.54 7.95 179.20 1.42 19.97 16 11 S 0.05 2.21 18.65 -56.49 -1.05 1.16 16 12 C -0.54 -31.65 9.80 67.95 0.67 -30.99 16 13 H 0.08 5.26 6.79 -2.91 -0.02 5.24 16 14 C 0.04 2.56 5.50 84.87 0.47 3.03 16 15 N -0.91 -56.34 13.96 21.64 0.30 -56.04 16 16 Si 0.91 40.75 27.74 68.60 1.90 42.65 16 17 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.22 -9.12 6.74 99.48 0.67 -8.45 16 20 N -0.62 -20.03 3.41 -695.19 -2.37 -22.40 16 21 C 0.08 2.00 5.09 86.73 0.44 2.44 16 22 C -0.12 -1.99 6.95 31.78 0.22 -1.77 16 23 C -0.12 -2.01 7.08 31.99 0.23 -1.78 16 24 C 0.09 2.20 6.64 86.86 0.58 2.77 16 25 C -0.22 -6.93 6.43 22.60 0.15 -6.79 16 26 C 0.16 4.38 6.43 22.62 0.15 4.52 16 27 O -0.31 -7.54 10.26 -77.73 -0.80 -8.34 16 28 C 0.02 0.30 9.81 113.37 1.11 1.41 16 29 H 0.06 0.72 7.66 -2.38 -0.02 0.70 16 30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.69 7.64 -2.39 -0.02 0.67 16 32 H 0.17 3.21 6.25 -2.91 -0.02 3.20 16 33 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.06 1.88 4.51 -2.39 -0.01 1.87 16 35 H 0.07 1.89 4.97 -2.39 -0.01 1.88 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.80 7.70 -2.39 -0.02 1.78 16 42 H 0.14 4.40 6.28 -2.91 -0.02 4.38 16 43 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.06 7.59 -2.38 -0.02 1.04 16 45 H 0.05 1.03 7.71 -2.39 -0.02 1.01 16 Total: -1.00 -78.95 382.48 5.29 -73.65 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.01 Total: 16.93 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 8.25 Total: 11.30 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -3.19 Total: -129.63 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.62 Total: -16.06 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.90 Total: 42.65 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.05 Total: 1.16 kcal Total: -78.95 5.29 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100918098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.308 kcal (2) G-P(sol) polarization free energy of solvation -78.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds