Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47534 * 270.00380 * 3 2 1 5 5 H 1.48505 * 109.46917 * 30.00635 * 3 2 1 6 6 H 1.48496 * 109.46825 * 150.00114 * 3 2 1 7 7 C 1.37880 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99831 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99626 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46882 * 179.97438 * 9 7 2 11 11 C 1.46963 * 110.99595 * 66.17766 * 10 9 7 12 12 C 1.53056 * 109.35944 * 183.16796 * 11 10 9 13 13 N 1.46956 * 109.38342 * 301.62902 * 12 11 10 14 14 C 1.37213 * 111.00207 * 183.17772 * 13 12 11 15 15 C 1.46651 * 134.20075 * 359.64571 * 14 13 12 16 16 O 1.21674 * 135.79828 * 359.97438 * 15 14 13 17 17 C 1.47934 * 88.40532 * 180.02562 * 15 14 13 18 18 O 1.21671 * 135.80021 * 179.97438 * 17 15 14 19 19 C 1.39769 * 134.20441 * 180.02562 * 14 13 12 20 20 N 1.37212 * 134.20059 * 359.97438 * 19 14 13 21 21 C 1.46896 * 111.00143 * 180.02562 * 20 19 14 22 22 C 1.54237 * 108.89871 * 276.39797 * 21 20 19 23 23 C 1.50557 * 108.48819 * 159.17543 * 22 21 20 24 24 C 1.54069 * 112.41527 * 94.26510 * 23 22 21 25 25 C 1.54074 * 112.81321 * 318.28307 * 24 23 22 26 26 C 1.50465 * 112.49760 * 318.28301 * 25 24 23 27 27 C 1.45544 * 108.89904 * 153.60424 * 21 20 19 28 28 C 1.46962 * 110.87987 * 59.31148 * 13 12 11 29 29 C 1.46956 * 111.00102 * 189.99751 * 10 9 7 30 30 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47655 * 59.99702 * 9 7 2 32 32 H 1.08997 * 109.47272 * 299.99391 * 9 7 2 33 33 H 1.08992 * 109.47287 * 63.21185 * 11 10 9 34 34 H 1.08994 * 109.50466 * 303.13858 * 11 10 9 35 35 H 1.09002 * 109.48813 * 181.65179 * 12 11 10 36 36 H 1.09002 * 109.48870 * 61.61068 * 12 11 10 37 37 H 1.00907 * 111.00139 * 56.05302 * 20 19 14 38 38 H 1.09006 * 108.87439 * 35.00175 * 21 20 19 39 39 H 1.08998 * 109.63144 * 278.97549 * 22 21 20 40 40 H 1.08998 * 109.63069 * 39.55261 * 22 21 20 41 41 H 1.09006 * 108.92204 * 333.51475 * 23 22 21 42 42 H 1.08998 * 108.91861 * 215.01782 * 23 22 21 43 43 H 1.08997 * 108.81433 * 197.42155 * 24 23 22 44 44 H 1.09000 * 108.72585 * 79.08038 * 24 23 22 45 45 H 1.09001 * 108.87168 * 197.50156 * 25 24 23 46 46 H 1.08998 * 108.79656 * 79.00972 * 25 24 23 47 47 H 1.09000 * 109.62841 * 334.44771 * 26 25 24 48 48 H 1.09005 * 109.62626 * 213.86754 * 26 25 24 49 49 H 1.09003 * 108.89413 * 303.44804 * 27 21 20 50 50 H 1.09000 * 108.89265 * 62.03096 * 27 21 20 51 51 H 1.09001 * 109.48625 * 60.64585 * 28 13 12 52 52 H 1.09003 * 109.48941 * 180.69193 * 28 13 12 53 53 H 1.09002 * 109.48806 * 56.84348 * 29 10 9 54 54 H 1.09003 * 109.49203 * 296.77991 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 3.6539 -3.2604 -1.2559 12 6 4.1108 -4.7194 -1.1842 13 7 5.5603 -4.7655 -0.9466 14 6 6.0177 -6.0591 -0.9465 15 6 5.3814 -7.3686 -1.1220 16 8 4.2503 -7.7686 -1.3249 17 6 6.7109 -7.9925 -0.9441 18 8 7.1477 -9.1280 -0.9375 19 6 7.2729 -6.6489 -0.7724 20 7 8.5337 -6.1625 -0.5347 21 6 9.5100 -7.2557 -0.4369 22 6 9.4865 -7.8195 0.9985 23 6 10.0651 -9.2093 0.9751 24 6 11.5707 -9.2244 1.3019 25 6 12.3414 -8.0772 0.6208 26 6 11.9017 -7.8524 -0.8005 27 6 10.8226 -6.7505 -0.8111 28 6 5.9072 -4.0841 0.3084 29 6 5.4508 -2.6250 0.2366 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6802 0.8888 32 1 3.8745 -0.6800 -0.8911 33 1 4.1516 -2.7639 -2.0888 34 1 2.5745 -3.2242 -1.4029 35 1 3.8805 -5.2192 -2.1251 36 1 3.5923 -5.2232 -0.3684 37 1 8.5494 -5.5882 0.2948 38 1 9.2249 -8.0462 -1.1313 39 1 10.0839 -7.1834 1.6516 40 1 8.4590 -7.8579 1.3601 41 1 9.9150 -9.6380 -0.0158 42 1 9.5394 -9.8233 1.7063 43 1 11.9921 -10.1745 0.9736 44 1 11.6953 -9.1394 2.3814 45 1 13.4052 -8.3143 0.6277 46 1 12.1811 -7.1608 1.1887 47 1 11.4867 -8.7752 -1.2057 48 1 12.7542 -7.5360 -1.4017 49 1 10.7641 -6.3232 -1.8122 50 1 11.1125 -5.9677 -0.1102 51 1 5.4092 -4.5803 1.1413 52 1 6.9866 -4.1210 0.4559 53 1 5.6811 -2.1252 1.1775 54 1 5.9693 -2.1215 -0.5793 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101700802.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = -19.619142 kcal Electronic energy + Delta-G solvation = -33263.241861 eV Core-core repulsion = 29008.006712 eV Total energy + Delta-G solvation = -4255.235149 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.63170 -40.60561 -40.16538 -39.06912 -37.93268 -36.56011 -35.08356 -34.29641 -33.08000 -32.13596 -31.19847 -30.46472 -27.23467 -25.90024 -25.39461 -24.71391 -23.77401 -23.24842 -22.90230 -21.65434 -20.98024 -20.18109 -19.37054 -18.96676 -18.51355 -18.29522 -17.33905 -17.07153 -16.77531 -16.43607 -16.26532 -16.08309 -15.98024 -15.60507 -15.56102 -15.37516 -15.19464 -15.07710 -14.90690 -14.63489 -14.38188 -14.03246 -13.92982 -13.69811 -13.46263 -13.24949 -13.15084 -12.96039 -12.90993 -12.77494 -12.49362 -12.37366 -12.30774 -12.04144 -11.80203 -11.75888 -11.64119 -11.59129 -11.38665 -11.36738 -11.21037 -11.11406 -10.78142 -10.68283 -10.52767 -9.10117 -8.62918 -8.26598 -6.30604 -0.72508 -0.39396 1.37263 1.38578 1.49194 1.77151 1.99617 2.35954 2.39870 2.45260 2.63648 3.04700 3.14576 3.34311 3.51770 3.69630 3.80886 3.91371 3.96760 4.06101 4.17179 4.20383 4.22195 4.22913 4.29414 4.33203 4.42637 4.45443 4.51714 4.56704 4.67519 4.77292 4.85179 4.87463 4.89263 4.93450 4.99838 5.02130 5.07034 5.10141 5.19204 5.22333 5.28514 5.35815 5.37679 5.41944 5.47021 5.49927 5.55133 5.58934 5.68361 5.71402 5.89346 5.96205 6.27765 6.31039 6.62352 6.76266 7.33095 8.89890 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.002114 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.393823 B =13244.068961 C =14395.785367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.517 4.517 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.546 5.546 11 C 0.070 3.930 12 C 0.067 3.933 13 N -0.440 5.440 14 C 0.028 3.972 15 C 0.328 3.672 16 O -0.435 6.435 17 C 0.345 3.655 18 O -0.418 6.418 19 C 0.068 3.932 20 N -0.562 5.562 21 C 0.086 3.914 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.111 4.111 28 C 0.064 3.936 29 C 0.049 3.951 30 H 0.266 0.734 31 H 0.038 0.962 32 H -0.011 1.011 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.383 0.617 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.120 0.880 53 H 0.098 0.902 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.021 -14.704 2.008 33.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.047 3.953 10 N -0.271 5.271 11 C -0.058 4.058 12 C -0.060 4.060 13 N -0.152 5.152 14 C -0.085 4.085 15 C 0.204 3.796 16 O -0.310 6.310 17 C 0.220 3.780 18 O -0.292 6.292 19 C -0.046 4.046 20 N -0.191 5.191 21 C -0.020 4.020 22 C -0.177 4.177 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.148 4.148 28 C -0.060 4.060 29 C -0.079 4.079 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.007 0.993 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.218 0.782 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.079 0.921 52 H 0.138 0.862 53 H 0.116 0.884 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 29.703 -15.138 1.346 33.365 hybrid contribution -0.952 0.645 0.313 1.192 sum 28.751 -14.493 1.659 32.240 Atomic orbital electron populations 1.70061 1.08257 1.28091 1.52581 1.25890 0.95600 1.03303 0.94411 0.85689 0.79625 0.78442 0.78995 1.19567 1.21039 1.16594 1.21270 0.91242 0.93157 1.49873 0.94520 1.19921 0.94063 0.85901 0.95462 1.62040 1.13305 1.17486 1.34284 1.21933 1.00719 0.92407 0.90779 1.22278 0.84127 0.97204 1.02341 1.58051 1.15190 1.08766 1.33214 1.23328 0.94104 0.89881 1.01163 1.24773 0.90082 0.90360 0.74372 1.90736 1.22964 1.78588 1.38717 1.24333 0.90280 0.88680 0.74715 1.90714 1.75345 1.22544 1.40579 1.22921 0.89056 0.92886 0.99772 1.56507 0.99963 1.21654 1.40934 1.20954 0.92372 0.90969 0.97717 1.22027 1.01136 0.98318 0.96169 1.21195 0.96165 0.96203 1.01696 1.21918 0.93832 0.98979 1.00578 1.21364 0.99686 0.98909 0.95650 1.21260 0.98123 0.98292 0.97409 1.20449 0.92427 0.99026 1.02946 1.22489 1.02787 0.93601 0.87089 1.22302 0.87485 0.95759 1.02336 0.92513 0.94417 0.99310 0.94540 0.91468 0.89194 0.93051 0.78248 0.90623 0.88976 0.92774 0.92793 0.92631 0.92349 0.91803 0.91652 0.91320 0.92307 0.90621 0.91422 0.90160 0.92075 0.86238 0.88366 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 2 C 0.01 0.29 5.47 84.65 0.46 0.76 16 3 Si 0.95 42.65 27.47 68.60 1.88 44.53 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 7 C -0.52 -29.01 9.03 25.60 0.23 -28.78 16 8 H 0.04 2.32 7.37 -2.91 -0.02 2.30 16 9 C 0.17 7.79 3.79 85.56 0.32 8.12 16 10 N -0.55 -20.66 4.70 -900.27 -4.23 -24.89 16 11 C 0.07 2.57 5.43 86.31 0.47 3.04 16 12 C 0.07 2.01 4.80 86.31 0.41 2.43 16 13 N -0.44 -10.62 4.75 -696.49 -3.30 -13.92 16 14 C 0.03 0.60 6.42 38.79 0.25 0.85 16 15 C 0.33 8.45 8.53 24.96 0.21 8.66 16 16 O -0.44 -14.12 17.65 -4.27 -0.08 -14.19 16 17 C 0.34 7.59 8.35 24.96 0.21 7.80 16 18 O -0.42 -10.54 16.96 -4.26 -0.07 -10.61 16 19 C 0.07 1.16 6.86 38.79 0.27 1.43 16 20 N -0.56 -6.70 6.22 -328.51 -2.04 -8.74 16 21 C 0.09 0.98 1.68 43.06 0.07 1.05 16 22 C -0.14 -1.41 4.90 30.22 0.15 -1.26 16 23 C -0.11 -1.34 5.32 30.16 0.16 -1.18 16 24 C -0.12 -1.01 5.85 31.32 0.18 -0.83 16 25 C -0.12 -0.84 5.32 30.14 0.16 -0.68 16 26 C -0.11 -0.92 5.61 30.19 0.17 -0.75 16 27 C -0.11 -0.97 4.77 28.74 0.14 -0.83 16 28 C 0.06 1.32 5.51 86.31 0.48 1.80 16 29 C 0.05 1.32 5.61 86.31 0.48 1.81 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.04 1.65 7.08 -2.39 -0.02 1.63 16 32 H -0.01 -0.48 7.55 -2.39 -0.02 -0.50 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 2.90 6.79 -2.39 -0.02 2.89 16 35 H 0.09 2.64 7.99 -2.39 -0.02 2.62 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.38 2.82 7.55 -89.69 -0.68 2.14 16 38 H 0.08 1.20 5.68 -2.38 -0.01 1.19 16 39 H 0.09 0.64 6.96 -2.39 -0.02 0.62 16 40 H 0.05 0.66 7.69 -2.39 -0.02 0.64 16 41 H 0.05 0.79 6.63 -2.38 -0.02 0.77 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.07 0.41 6.62 -2.39 -0.02 0.40 16 47 H 0.06 0.61 6.98 -2.39 -0.02 0.59 16 48 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.52 7.46 -2.39 -0.02 0.50 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.12 1.52 7.05 -2.39 -0.02 1.50 16 53 H 0.10 2.35 8.07 -2.39 -0.02 2.33 16 54 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.77 412.90 -2.53 -72.30 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.18 Total: 10.61 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 4.83 Total: 3.41 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -9.28 Total: -106.05 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.15 Total: -24.81 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -69.77 -2.53 -72.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101700802.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.683 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds