Wall clock time and date at job start Tue Mar 31 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47171 * 2 1 4 4 C 1.50707 * 109.46759 * 119.99706 * 2 1 3 5 5 N 1.31136 * 126.54704 * 120.25742 * 4 2 1 6 6 C 1.34495 * 105.61218 * 180.12205 * 5 4 2 7 7 C 1.50697 * 126.28651 * 179.90060 * 6 5 4 8 8 N 1.46896 * 109.47420 * 269.71128 * 7 6 5 9 9 C 1.44178 * 110.99887 * 67.45980 * 8 7 6 10 10 C 1.54320 * 112.61342 * 217.52722 * 9 8 7 11 11 C 1.54324 * 111.71996 * 318.92665 * 10 9 8 12 12 N 1.44176 * 112.62090 * 318.91166 * 11 10 9 13 13 C 1.46898 * 111.00286 * 217.52812 * 12 11 10 14 14 C 1.53001 * 109.47056 * 55.36374 * 13 12 11 15 15 H 1.09006 * 109.46790 * 300.57397 * 14 13 12 16 16 C 1.47200 * 109.47374 * 60.57295 * 14 13 12 17 17 N 9.55555 * 90.63242 * 173.04143 * 2 1 3 18 18 C 1.52996 * 109.47265 * 180.57715 * 14 13 12 19 19 C 1.50693 * 109.47518 * 174.99856 * 18 14 13 20 20 H 1.08000 * 119.99880 * 359.97438 * 19 18 14 21 21 C 1.37875 * 120.00648 * 179.97438 * 19 18 14 22 22 N 1.31521 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00452 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47000 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46888 * 120.00202 * 23 21 19 26 26 H 1.48503 * 109.47060 * 240.00128 * 23 21 19 27 27 C 1.48094 * 109.91495 * 94.34173 * 12 11 10 28 28 C 1.46095 * 112.14301 * 279.67424 * 27 12 11 29 29 N 1.29942 * 107.42292 * 359.63686 * 6 5 4 30 30 O 1.21303 * 110.25494 * 0.22665 * 29 6 5 31 31 H 1.08997 * 109.47100 * 60.00170 * 1 2 3 32 32 H 1.09004 * 109.47359 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47177 * 300.00299 * 1 2 3 34 34 H 1.09000 * 109.47177 * 239.99701 * 2 1 3 35 35 H 1.09000 * 109.47710 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47387 * 299.99679 * 3 2 1 37 37 H 1.09009 * 109.47340 * 60.00101 * 3 2 1 38 38 H 1.09002 * 109.47382 * 149.70654 * 7 6 5 39 39 H 1.09009 * 109.46805 * 29.71169 * 7 6 5 40 40 H 1.09001 * 108.85775 * 338.33649 * 9 8 7 41 41 H 1.09000 * 108.85488 * 96.72432 * 9 8 7 42 42 H 1.08994 * 109.02627 * 79.50262 * 10 9 8 43 43 H 1.08998 * 109.03281 * 198.42256 * 10 9 8 44 44 H 1.08998 * 108.85297 * 79.72737 * 11 10 9 45 45 H 1.09006 * 108.84787 * 198.20924 * 11 10 9 46 46 H 1.08995 * 109.47086 * 175.36106 * 13 12 11 47 47 H 1.09003 * 109.47095 * 295.36088 * 13 12 11 48 48 H 1.09007 * 109.47070 * 294.99788 * 18 14 13 49 49 H 1.09001 * 109.47156 * 54.99831 * 18 14 13 50 50 H 0.96999 * 120.00094 * 180.02562 * 22 21 19 51 51 H 1.08998 * 108.94568 * 158.98900 * 27 12 11 52 52 H 1.08999 * 108.94381 * 40.35829 * 27 12 11 53 53 H 1.09003 * 108.93972 * 181.37970 * 28 27 12 54 54 H 1.09001 * 108.94043 * 300.08045 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 2.7930 -1.7781 1.2600 6 6 2.9811 -2.0527 2.5632 7 6 3.7884 -3.1936 3.1267 8 7 2.9200 -4.3641 3.3104 9 6 2.4817 -4.8867 2.0401 10 6 1.0231 -5.3894 2.0767 11 6 0.7154 -6.1549 3.3809 12 7 1.7938 -7.0240 3.7814 13 6 1.2774 -8.2747 4.3530 14 6 0.3331 -8.9418 3.3509 15 1 -0.4929 -8.2671 3.1255 16 6 1.0682 -9.2481 2.1129 17 7 1.6355 -9.4846 1.1576 18 6 -0.2160 -10.2372 3.9518 19 6 -1.2386 -10.8306 3.0175 20 1 -1.4737 -10.3333 2.0881 21 6 -1.8741 -12.0084 3.3489 22 7 -1.5881 -12.6138 4.4810 23 14 -3.1422 -12.7436 2.1909 24 1 -3.2813 -11.8758 0.9940 25 1 -2.7024 -14.0985 1.7711 26 1 -4.4503 -12.8413 2.8870 27 6 2.6745 -6.3241 4.7447 28 6 3.6126 -5.4233 4.0791 29 7 2.3436 -1.1502 3.2469 30 8 1.7919 -0.3695 2.5002 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8901 38 1 4.2106 -2.9001 4.0878 39 1 4.5945 -3.4439 2.4369 40 1 2.5649 -4.1016 1.2885 41 1 3.1323 -5.7138 1.7561 42 1 0.3508 -4.5351 1.9989 43 1 0.8544 -6.0526 1.2283 44 1 0.5298 -5.4339 4.1770 45 1 -0.1825 -6.7551 3.2335 46 1 2.1087 -8.9452 4.5706 47 1 0.7356 -8.0571 5.2735 48 1 0.5999 -10.9458 4.0949 49 1 -0.6834 -10.0224 4.9128 50 1 -2.0349 -13.4427 4.7140 51 1 3.2374 -7.0650 5.3123 52 1 2.0576 -5.7468 5.4333 53 1 4.2487 -4.9564 4.8311 54 1 4.2366 -6.0024 3.3984 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106785602.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:41 Heat of formation + Delta-G solvation = 84.417653 kcal Electronic energy + Delta-G solvation = -32885.570001 eV Core-core repulsion = 28667.138977 eV Total energy + Delta-G solvation = -4218.431024 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.222 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.65304 -40.73188 -38.77240 -37.37804 -37.09531 -36.15684 -35.41843 -33.62694 -33.54795 -32.61118 -30.55187 -28.56008 -28.11087 -27.23466 -26.45619 -25.32034 -24.48247 -24.03053 -23.38311 -21.73780 -21.47368 -20.64705 -19.18673 -18.58153 -18.35536 -18.12442 -17.37498 -17.02039 -16.71226 -16.56186 -16.38112 -15.87886 -15.67508 -15.29184 -15.02571 -14.84651 -14.57418 -14.43302 -14.26984 -14.25893 -13.88007 -13.77475 -13.60645 -13.46268 -13.08440 -13.07723 -12.95288 -12.79679 -12.77116 -12.66795 -12.58582 -12.47462 -12.43533 -12.29727 -12.23878 -12.20812 -12.11817 -11.90048 -11.87665 -11.67053 -11.44299 -11.24985 -11.01362 -10.92679 -10.55848 -9.45944 -9.19407 -8.20540 -6.28552 0.13968 1.10686 1.37779 1.40853 1.51247 1.83766 2.06633 2.14680 2.40333 2.50035 2.91056 2.91928 3.02432 3.14871 3.35338 3.76790 3.89774 3.91745 3.97667 4.01228 4.11467 4.16064 4.25420 4.26975 4.33336 4.41810 4.44503 4.49118 4.54158 4.63562 4.70243 4.72426 4.75581 4.77547 4.79402 4.88099 4.90357 4.96643 4.98277 5.02675 5.03895 5.07949 5.09108 5.16992 5.19423 5.31144 5.32781 5.45617 5.60785 5.78281 5.94021 6.00259 6.13718 6.24521 6.28927 6.82313 6.93448 7.15341 7.39854 8.90442 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.002018 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.157643 B =13874.135721 C =15036.487642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.000 4.000 3 C -0.146 4.146 4 C 0.192 3.808 5 N -0.504 5.504 6 C 0.174 3.826 7 C 0.148 3.852 8 N -0.533 5.533 9 C 0.069 3.931 10 C -0.093 4.093 11 C 0.058 3.942 12 N -0.546 5.546 13 C 0.075 3.925 14 C 0.015 3.985 15 H 0.114 0.886 16 C 0.267 3.733 17 N -0.511 5.511 18 C 0.039 3.961 19 C -0.537 4.537 20 H 0.051 0.949 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.948 3.052 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.059 3.941 28 C 0.065 3.935 29 N -0.391 5.391 30 O 0.075 5.925 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.003 0.997 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.092 0.908 52 H 0.050 0.950 53 H 0.103 0.897 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 30.474 -2.809 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 C -0.204 4.204 4 C -0.029 4.029 5 N -0.238 5.238 6 C -0.100 4.100 7 C 0.019 3.981 8 N -0.258 5.258 9 C -0.060 4.060 10 C -0.132 4.132 11 C -0.070 4.070 12 N -0.271 5.271 13 C -0.054 4.054 14 C -0.007 4.007 15 H 0.132 0.868 16 C -0.050 4.050 17 N -0.188 5.188 18 C 0.001 3.999 19 C -0.576 4.576 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.774 3.226 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.069 4.069 28 C -0.062 4.062 29 N -0.099 5.099 30 O 0.017 5.983 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.022 0.978 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.110 0.890 52 H 0.068 0.932 53 H 0.121 0.879 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.765 29.679 -3.573 31.448 hybrid contribution -0.828 -0.953 -0.096 1.267 sum 8.937 28.725 -3.669 30.306 Atomic orbital electron populations 1.21932 0.91172 1.02816 1.04821 1.20143 0.97727 0.96549 0.87579 1.21919 1.01489 0.92203 1.04818 1.29604 0.92484 0.91541 0.89238 1.71915 1.18281 1.14326 1.19259 1.25890 0.99744 0.98590 0.85732 1.20408 0.91200 0.84802 1.01726 1.61436 1.39023 1.06606 1.18777 1.21702 0.96231 0.97876 0.90203 1.21833 0.95999 0.98048 0.97346 1.21846 0.93442 0.94809 0.96945 1.61543 1.20088 1.04851 1.40591 1.22104 0.97702 0.90564 0.94982 1.19354 0.95654 0.99776 0.85896 0.86847 1.29233 0.91544 0.90257 0.93935 1.80962 1.12572 1.11920 1.13356 1.18977 0.94840 0.90003 0.96125 1.21547 1.22718 1.07896 1.05406 0.93036 1.25707 0.98935 0.97507 0.96628 1.70036 1.43795 1.18529 1.23803 0.85648 0.79443 0.78164 0.79344 1.19516 1.21054 1.19734 1.21158 0.96078 0.96400 0.93220 1.21182 0.95472 0.91504 0.98005 1.74620 1.12499 1.04764 1.18049 1.85244 1.54250 1.42860 1.15969 0.87999 0.93108 0.91455 0.86023 0.92420 0.88075 0.91455 0.86377 0.90926 0.91913 0.94937 0.92679 0.93543 0.93536 0.91621 0.89941 0.91297 0.97830 0.94656 0.92700 0.88979 0.93188 0.87897 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.18 71.98 0.66 -0.48 16 2 C 0.00 0.00 3.39 -11.54 -0.04 -0.04 16 3 C -0.15 -0.81 9.17 71.98 0.66 -0.15 16 4 C 0.19 3.40 7.02 88.38 0.62 4.02 16 5 N -0.50 -11.23 10.40 -303.19 -3.15 -14.38 16 6 C 0.17 3.95 6.98 138.46 0.97 4.92 16 7 C 0.15 2.79 5.44 85.56 0.47 3.26 16 8 N -0.53 -11.48 4.25 -914.91 -3.89 -15.37 16 9 C 0.07 1.75 5.01 87.26 0.44 2.19 16 10 C -0.09 -2.52 6.42 31.49 0.20 -2.32 16 11 C 0.06 1.55 5.01 87.26 0.44 1.98 16 12 N -0.55 -14.38 3.93 -910.27 -3.58 -17.96 16 13 C 0.07 2.15 4.31 86.30 0.37 2.53 16 14 C 0.01 0.54 1.92 -12.60 -0.02 0.52 16 15 H 0.11 3.95 5.80 -2.38 -0.01 3.94 16 16 C 0.27 11.22 13.55 89.44 1.21 12.43 16 17 N -0.51 -23.40 18.54 20.01 0.37 -23.03 16 18 C 0.04 1.83 4.42 29.84 0.13 1.96 16 19 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 20 H 0.05 2.76 7.59 -2.91 -0.02 2.73 16 21 C 0.01 0.62 5.46 84.65 0.46 1.08 16 22 N -0.92 -53.05 13.29 21.45 0.28 -52.76 16 23 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.06 1.20 5.18 83.95 0.43 1.63 16 28 C 0.07 1.21 5.18 83.96 0.44 1.64 16 29 N -0.39 -9.39 12.16 -60.33 -0.73 -10.13 16 30 O 0.07 1.55 11.31 74.91 0.85 2.40 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.12 1.78 7.80 -2.39 -0.02 1.76 16 39 H 0.07 1.28 8.10 -2.38 -0.02 1.26 16 40 H 0.06 1.65 5.86 -2.39 -0.01 1.64 16 41 H 0.03 0.93 7.16 -2.39 -0.02 0.91 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.20 7.17 -2.39 -0.02 1.19 16 45 H 0.07 1.83 5.03 -2.38 -0.01 1.82 16 46 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 47 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 49 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 50 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 51 H 0.09 1.63 7.83 -2.39 -0.02 1.61 16 52 H 0.05 1.01 7.37 -2.39 -0.02 0.99 16 53 H 0.10 1.34 7.64 -2.39 -0.02 1.33 16 54 H 0.04 0.87 7.36 -2.39 -0.02 0.85 16 Total: -1.00 -69.28 429.80 0.72 -68.56 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.89 Total: 10.19 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 7.65 Total: 6.62 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -10.70 Total: -133.62 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.85 Total: 2.40 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.28 0.72 -68.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106785602.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.973 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds