Wall clock time and date at job start Tue Mar 31 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 120.00349 * 2 1 4 4 N 1.34777 * 119.99948 * 179.97438 * 2 1 3 5 5 C 1.46505 * 119.99719 * 3.26153 * 4 2 1 6 6 C 1.50701 * 109.47016 * 275.03042 * 5 4 2 7 7 N 1.29939 * 126.29049 * 269.68740 * 6 5 4 8 8 O 1.21300 * 110.24956 * 179.84711 * 7 6 5 9 9 C 1.33634 * 109.81650 * 0.42469 * 8 7 6 10 10 C 1.50696 * 126.55701 * 179.75809 * 9 8 7 11 11 N 1.31140 * 106.89191 * 359.74214 * 9 8 7 12 12 C 1.46494 * 120.00236 * 183.26178 * 4 2 1 13 13 H 1.09005 * 110.35512 * 173.19532 * 12 4 2 14 14 C 1.54595 * 110.30731 * 295.33602 * 12 4 2 15 15 C 1.54937 * 102.92365 * 96.96093 * 14 12 4 16 16 N 1.48537 * 103.22494 * 37.41005 * 15 14 12 17 17 C 1.46904 * 110.99769 * 200.28218 * 16 15 14 18 18 C 1.52996 * 109.47114 * 287.39998 * 17 16 15 19 19 H 1.09005 * 109.47303 * 304.99649 * 18 17 16 20 20 C 1.47200 * 109.47451 * 65.00253 * 18 17 16 21 21 N 5.60242 * 134.82984 * 337.48177 * 2 1 3 22 22 C 1.53004 * 109.46992 * 185.00091 * 18 17 16 23 23 C 1.50709 * 109.46805 * 174.99812 * 22 18 17 24 24 H 1.07994 * 120.00397 * 359.97438 * 23 22 18 25 25 C 1.37880 * 119.99594 * 179.97438 * 23 22 18 26 26 N 1.31507 * 119.99931 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99974 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46985 * 90.00139 * 27 25 23 29 29 H 1.48500 * 109.46875 * 209.99423 * 27 25 23 30 30 H 1.48491 * 109.47239 * 329.99787 * 27 25 23 31 31 C 1.47901 * 105.82091 * 320.79553 * 16 15 14 32 32 H 1.08995 * 109.47057 * 264.76060 * 1 2 3 33 33 H 1.09004 * 109.46780 * 24.76044 * 1 2 3 34 34 H 1.09005 * 109.47326 * 144.75658 * 1 2 3 35 35 H 1.08991 * 109.47261 * 35.03533 * 5 4 2 36 36 H 1.09003 * 109.46650 * 155.03511 * 5 4 2 37 37 H 1.09002 * 109.47169 * 269.97730 * 10 9 8 38 38 H 1.08998 * 109.47064 * 29.97807 * 10 9 8 39 39 H 1.09003 * 109.47150 * 149.97939 * 10 9 8 40 40 H 1.08999 * 110.72327 * 215.31403 * 14 12 4 41 41 H 1.08992 * 110.72903 * 338.59907 * 14 12 4 42 42 H 1.09004 * 110.66249 * 278.98020 * 15 14 12 43 43 H 1.09000 * 110.81430 * 155.91586 * 15 14 12 44 44 H 1.08997 * 109.47256 * 47.40085 * 17 16 15 45 45 H 1.08994 * 109.47041 * 167.39788 * 17 16 15 46 46 H 1.08997 * 109.47325 * 294.99523 * 22 18 17 47 47 H 1.08997 * 109.47332 * 55.00316 * 22 18 17 48 48 H 0.96998 * 120.00295 * 180.02562 * 26 25 23 49 49 H 1.09003 * 109.91764 * 265.97317 * 31 16 15 50 50 H 1.08998 * 110.07425 * 144.77760 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4501 -2.4349 -0.0711 6 6 1.0220 -2.8469 1.3139 7 7 1.6993 -3.5865 2.1401 8 8 1.0827 -3.7332 3.1744 9 6 -0.0858 -3.0891 3.1006 10 6 -1.1454 -3.0266 4.1702 11 7 -0.1340 -2.5214 1.9194 12 6 3.6441 -1.1683 0.0727 13 1 4.0175 -2.1863 0.1839 14 6 4.2441 -0.5118 -1.1918 15 6 4.5147 0.9428 -0.7318 16 7 4.9684 0.7762 0.6727 17 6 4.8179 2.0281 1.4265 18 6 5.8805 3.0295 0.9694 19 1 6.8688 2.5801 1.0662 20 6 5.6413 3.3909 -0.4373 21 7 5.4568 3.6703 -1.5217 22 6 5.8044 4.2862 1.8388 23 6 6.9281 5.2206 1.4706 24 1 7.6268 4.9454 0.6945 25 6 7.0640 6.4267 2.1246 26 7 8.0448 7.2419 1.8037 27 14 5.8558 6.9024 3.4676 28 1 6.3571 6.4179 4.7787 29 1 5.7158 8.3802 3.5067 30 1 4.5341 6.2872 3.1849 31 6 4.1219 -0.2927 1.2458 32 1 -0.3633 -0.0938 1.0233 33 1 -0.3633 0.9332 -0.4304 34 1 -0.3634 -0.8393 -0.5930 35 1 0.5699 -2.3118 -0.7019 36 1 2.0964 -3.2034 -0.4952 37 1 -1.8418 -3.8550 4.0407 38 1 -0.6758 -3.0967 5.1514 39 1 -1.6851 -2.0827 4.0923 40 1 5.1730 -1.0047 -1.4784 41 1 3.5275 -0.5297 -2.0128 42 1 3.6009 1.5356 -0.7732 43 1 5.2969 1.4012 -1.3370 44 1 3.8262 2.4433 1.2470 45 1 4.9409 1.8283 2.4909 46 1 4.8490 4.7845 1.6745 47 1 5.8930 4.0076 2.8888 48 1 8.1407 8.0903 2.2640 49 1 3.2640 0.1462 1.7553 50 1 4.7017 -0.8940 1.9460 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107505726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:17 Heat of formation + Delta-G solvation = 92.074148 kcal Electronic energy + Delta-G solvation = -33350.061978 eV Core-core repulsion = 28996.129870 eV Total energy + Delta-G solvation = -4353.932108 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.08361 -40.92913 -38.25903 -36.99514 -36.27017 -35.39144 -34.00905 -33.66615 -32.34252 -30.80195 -29.78836 -29.38581 -28.78682 -27.62711 -26.43805 -24.11178 -23.41112 -22.50462 -21.77647 -21.20233 -20.82334 -19.14964 -18.63123 -17.95074 -17.37925 -16.89257 -16.69038 -16.55042 -16.15169 -15.56716 -15.29541 -14.74854 -14.52607 -14.18751 -14.04101 -13.95160 -13.66983 -13.57831 -13.51221 -13.27575 -13.20158 -12.68006 -12.59268 -12.49664 -12.44537 -12.28856 -12.20042 -12.06997 -11.99319 -11.84613 -11.56668 -11.46471 -11.33643 -11.03319 -10.70675 -10.68823 -10.61748 -10.44180 -10.30558 -9.88026 -9.81178 -9.61369 -9.22406 -9.17559 -8.54095 -8.01094 -6.03216 -4.02775 0.64401 1.57874 2.28177 2.34936 2.66086 3.11143 3.31537 3.39693 3.42909 3.46792 3.75105 3.79104 4.17917 4.28209 4.32274 4.45531 4.52187 4.59423 4.65763 4.67400 4.73697 4.76920 4.90601 4.94706 5.00051 5.05451 5.24241 5.29082 5.31767 5.41644 5.44546 5.48901 5.50000 5.63884 5.68428 5.77744 5.88735 5.94324 6.10968 6.23639 6.26443 6.35575 6.47474 6.55476 6.94601 7.03641 7.11018 7.22715 7.32448 7.66222 7.72903 8.02686 8.48807 8.57226 9.01087 9.57202 11.10059 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002482 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.704797 B =11278.885633 C =12283.078228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.512 6.512 4 N -0.607 5.607 5 C 0.203 3.797 6 C 0.148 3.852 7 N -0.367 5.367 8 O 0.081 5.919 9 C 0.181 3.819 10 C -0.064 4.064 11 N -0.477 5.477 12 C 0.135 3.865 13 H 0.097 0.903 14 C -0.127 4.127 15 C 0.014 3.986 16 N -0.507 5.507 17 C 0.055 3.945 18 C 0.021 3.979 19 H 0.112 0.888 20 C 0.250 3.750 21 N -0.474 5.474 22 C -0.004 4.004 23 C -0.524 4.524 24 H 0.074 0.926 25 C 0.070 3.930 26 N -0.899 5.899 27 Si 0.877 3.123 28 H -0.275 1.275 29 H -0.288 1.288 30 H -0.264 1.264 31 C 0.038 3.962 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.023 0.977 47 H 0.032 0.968 48 H 0.264 0.736 49 H 0.049 0.951 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.033 -28.699 3.155 36.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.387 6.387 4 N -0.343 5.343 5 C 0.077 3.923 6 C -0.127 4.127 7 N -0.074 5.074 8 O 0.020 5.980 9 C -0.039 4.039 10 C -0.122 4.122 11 N -0.212 5.212 12 C 0.032 3.968 13 H 0.115 0.885 14 C -0.166 4.166 15 C -0.113 4.113 16 N -0.231 5.231 17 C -0.074 4.074 18 C -0.001 4.001 19 H 0.130 0.870 20 C -0.066 4.066 21 N -0.151 5.151 22 C -0.043 4.043 23 C -0.562 4.562 24 H 0.092 0.908 25 C -0.132 4.132 26 N -0.537 5.537 27 Si 0.704 3.296 28 H -0.200 1.200 29 H -0.214 1.214 30 H -0.189 1.189 31 C -0.091 4.091 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.728 -27.724 1.051 34.632 hybrid contribution -1.357 0.383 1.399 1.986 sum -22.085 -27.341 2.450 35.232 Atomic orbital electron populations 1.22001 0.91384 1.04582 1.05097 1.20998 0.90680 0.83212 0.75147 1.90660 1.69531 1.31062 1.47472 1.48254 1.06615 1.05069 1.74337 1.19781 0.98742 0.87167 0.86608 1.26389 0.88382 0.96807 1.01084 1.74663 1.18975 1.19380 0.94408 1.85313 1.25888 1.55671 1.31119 1.28869 0.89016 0.90653 0.95411 1.20431 0.92756 1.05883 0.93128 1.71884 1.20917 1.23267 1.05117 1.22062 0.77864 1.00478 0.96385 0.88457 1.22836 1.00590 0.97078 0.96119 1.23957 1.01724 0.96277 0.89386 1.64923 1.49484 1.06177 1.02536 1.22363 0.98044 0.88882 0.98131 1.18988 1.00419 0.97218 0.83482 0.87022 1.28890 0.92121 0.91012 0.94612 1.80957 1.09963 1.10771 1.13448 1.19624 0.98545 0.91484 0.94662 1.21050 1.11895 1.01730 1.21486 0.90781 1.24985 0.95169 0.96153 0.96852 1.69907 1.31215 1.10450 1.42143 0.86822 0.82478 0.77760 0.82570 1.20042 1.21356 1.18879 1.23004 0.96134 0.93940 0.96047 0.88433 0.89095 0.90165 0.86859 0.87099 0.87916 0.88280 0.87592 0.90210 0.91179 0.88829 0.90599 0.93122 0.89858 0.95887 0.94942 0.92658 0.93272 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.23 36.01 0.33 -1.06 16 2 C 0.51 5.80 6.81 -10.98 -0.07 5.73 16 3 O -0.51 -8.01 10.66 5.56 0.06 -7.95 16 4 N -0.61 -5.70 2.42 -165.93 -0.40 -6.10 16 5 C 0.20 1.30 5.77 -5.19 -0.03 1.27 16 6 C 0.15 1.20 7.60 -156.38 -1.19 0.01 16 7 N -0.37 -3.38 12.16 30.89 0.38 -3.00 16 8 O 0.08 0.63 11.31 18.12 0.20 0.83 16 9 C 0.18 1.07 8.51 -13.05 -0.11 0.95 16 10 C -0.06 -0.08 10.51 36.00 0.38 0.30 16 11 N -0.48 -3.61 10.65 -9.88 -0.11 -3.71 16 12 C 0.14 1.45 3.55 -66.58 -0.24 1.21 16 13 H 0.10 0.87 7.85 -51.93 -0.41 0.46 16 14 C -0.13 -1.56 6.39 -24.87 -0.16 -1.72 16 15 C 0.01 0.22 4.26 -1.90 -0.01 0.21 16 16 N -0.51 -7.97 5.24 -230.45 -1.21 -9.18 16 17 C 0.06 0.95 4.36 -3.82 -0.02 0.94 16 18 C 0.02 0.42 2.42 -93.41 -0.23 0.20 16 19 H 0.11 2.20 8.14 -51.93 -0.42 1.78 16 20 C 0.25 5.62 10.85 -20.80 -0.23 5.39 16 21 N -0.47 -11.30 17.69 42.11 0.74 -10.55 16 22 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 23 C -0.52 -14.90 9.15 -34.43 -0.32 -15.22 16 24 H 0.07 2.30 7.84 -52.49 -0.41 1.89 16 25 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 26 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 27 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 28 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 30 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 31 C 0.04 0.50 5.71 -2.76 -0.02 0.48 16 32 H 0.10 0.80 7.54 -51.93 -0.39 0.41 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.46 6.11 -51.93 -0.32 0.15 16 35 H 0.11 0.50 6.13 -51.93 -0.32 0.18 16 36 H 0.11 0.53 7.90 -51.93 -0.41 0.12 16 37 H 0.10 -0.04 8.14 -51.93 -0.42 -0.47 16 38 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.11 0.10 8.14 -51.93 -0.42 -0.33 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.82 8.05 -51.93 -0.42 0.41 16 42 H 0.09 1.75 4.53 -52.81 -0.24 1.51 16 43 H 0.08 1.40 5.73 -51.93 -0.30 1.11 16 44 H 0.05 0.95 7.07 -51.93 -0.37 0.58 16 45 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 46 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 47 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.05 0.72 6.17 -51.93 -0.32 0.40 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -36.86 399.47 -7.51 -44.37 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.21 Total: -0.89 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.09 Total: 0.47 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.18 Total: -59.83 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.26 Total: -7.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.86 -7.51 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107505726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.446 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds