Wall clock time and date at job start Tue Mar 31 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 117.00255 * 2 1 4 4 C 1.38754 * 120.05694 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.94674 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05492 * 0.03090 * 5 4 3 7 7 S 1.76202 * 119.94450 * 179.97438 * 6 5 4 8 8 O 1.42098 * 106.40460 * 4.65834 * 7 6 5 9 9 O 1.42103 * 106.40322 * 231.73900 * 7 6 5 10 10 N 1.65603 * 107.21978 * 118.19905 * 7 6 5 11 11 C 1.38852 * 119.99951 * 297.68547 * 10 7 6 12 12 C 1.39568 * 119.84213 * 133.13569 * 11 10 7 13 13 C 1.36339 * 120.15886 * 180.25152 * 12 11 10 14 14 C 1.40893 * 119.83675 * 359.49907 * 13 12 11 15 15 C 1.41138 * 120.15505 * 180.25150 * 14 13 12 16 16 H 1.07999 * 120.00255 * 32.41799 * 15 14 13 17 17 C 1.39865 * 119.99806 * 212.41922 * 15 14 13 18 18 N 1.30907 * 120.00347 * 7.38655 * 17 15 14 19 19 Si 1.86799 * 119.99825 * 187.38190 * 17 15 14 20 20 H 1.48501 * 109.47318 * 60.00145 * 19 17 15 21 21 H 1.48503 * 109.47050 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46991 * 299.99819 * 19 17 15 23 23 C 1.40887 * 119.68822 * 0.47506 * 14 13 12 24 24 C 1.36339 * 119.83610 * 359.77947 * 23 14 13 25 25 C 1.38247 * 120.11420 * 0.24678 * 6 5 4 26 26 C 1.50698 * 119.97568 * 179.72950 * 25 6 5 27 27 C 1.38173 * 120.05146 * 359.45165 * 25 6 5 28 28 C 1.50692 * 120.02698 * 180.28953 * 27 25 6 29 29 H 1.09001 * 109.46888 * 59.99816 * 1 2 3 30 30 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46948 * 300.00318 * 1 2 3 32 32 H 1.08008 * 120.02740 * 359.96348 * 4 3 2 33 33 H 1.08005 * 119.97442 * 180.02562 * 5 4 3 34 34 H 0.96999 * 119.99262 * 117.67832 * 10 7 6 35 35 H 1.07998 * 119.92132 * 359.97066 * 12 11 10 36 36 H 1.08001 * 120.08151 * 179.74101 * 13 12 11 37 37 H 0.96993 * 120.00560 * 180.02562 * 18 17 15 38 38 H 1.07994 * 120.08289 * 179.75071 * 23 14 13 39 39 H 1.07998 * 119.92016 * 179.97438 * 24 23 14 40 40 H 1.09004 * 109.47303 * 94.27795 * 26 25 6 41 41 H 1.08997 * 109.46814 * 214.28050 * 26 25 6 42 42 H 1.09003 * 109.46932 * 334.28237 * 26 25 6 43 43 H 1.09002 * 109.47742 * 270.27805 * 28 27 25 44 44 H 1.09001 * 109.46998 * 30.28354 * 28 27 25 45 45 H 1.09003 * 109.47070 * 150.28048 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 -0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 0.0004 7 16 4.1020 5.2456 0.0004 8 8 3.0737 6.2200 0.1106 9 8 5.0367 5.2197 -1.0696 10 7 4.9901 5.3433 1.3948 11 6 4.3535 5.2994 2.6279 12 6 4.8472 4.4692 3.6353 13 6 4.2241 4.4173 4.8469 14 6 3.0853 5.2123 5.0841 15 6 2.4382 5.1677 6.3376 16 1 3.0119 4.9925 7.2357 17 6 1.0538 5.3505 6.4167 18 7 0.3388 5.4182 5.3223 19 14 0.2250 5.4978 8.0843 20 1 0.7832 6.6651 8.8132 21 1 -1.2363 5.6837 7.8961 22 1 0.4691 4.2611 8.8693 23 6 2.5928 6.0483 4.0626 24 6 3.2230 6.0861 2.8542 25 6 4.0561 2.5170 -0.0048 26 6 5.5609 2.5980 -0.0105 27 6 3.4312 1.2847 0.0009 28 6 4.2537 0.0220 0.0018 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2129 2.3204 -0.0016 33 1 1.3341 4.5114 0.0000 34 1 5.9551 5.4310 1.3499 35 1 5.7224 3.8631 3.4533 36 1 4.6049 3.7713 5.6242 37 1 -0.6212 5.5453 5.3771 38 1 1.7180 6.6573 4.2362 39 1 2.8464 6.7262 2.0701 40 1 5.9318 2.5389 1.0128 41 1 5.9670 1.7708 -0.5926 42 1 5.8722 3.5430 -0.4558 43 1 4.4528 -0.2828 -1.0257 44 1 5.1974 0.2035 0.5162 45 1 3.7060 -0.7681 0.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117227939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:40 Heat of formation + Delta-G solvation = -68.518661 kcal Electronic energy + Delta-G solvation = -30819.410550 eV Core-core repulsion = 26700.848890 eV Total energy + Delta-G solvation = -4118.561660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.39513 -38.08934 -37.86700 -36.87318 -35.50968 -34.81402 -33.39528 -32.79583 -31.58738 -29.59230 -28.73168 -27.80479 -27.59128 -26.07660 -24.74104 -22.48491 -21.26527 -21.01948 -20.87772 -18.93845 -17.75223 -17.38408 -17.29322 -17.12760 -16.87989 -16.19151 -15.94513 -15.23421 -14.76635 -14.25720 -14.17219 -14.15256 -14.02500 -13.54694 -13.19791 -13.08629 -12.91014 -12.77461 -12.56611 -12.40713 -12.31454 -12.14108 -12.09036 -11.80016 -11.75962 -11.65924 -11.49772 -11.27331 -11.16707 -11.13705 -10.85089 -10.80974 -10.59464 -10.50104 -10.14743 -9.79472 -9.28461 -8.99093 -8.65444 -8.38849 -7.65111 -7.12513 -6.76629 -4.41907 0.75254 1.08521 1.35056 2.66651 2.99894 3.04014 3.06431 3.08257 3.12175 3.32900 3.58617 3.89665 4.07963 4.56880 4.63065 4.71619 4.83884 4.95982 5.01841 5.10200 5.17531 5.26307 5.32534 5.52492 5.54618 5.59586 5.66175 5.72270 5.79669 5.97666 6.04829 6.12319 6.12928 6.25550 6.29972 6.35868 6.39582 6.70385 6.91157 6.98757 7.10921 7.14463 7.24390 7.40536 7.55504 7.81828 7.97785 8.05613 8.19750 8.55879 8.81220 8.88121 10.17665 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009135 B = 0.004012 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.422153 B = 6977.082753 C = 8523.777140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.179 3.821 4 C -0.230 4.230 5 C 0.026 3.974 6 C -0.696 4.696 7 S 2.686 3.314 8 O -0.957 6.957 9 O -0.977 6.977 10 N -1.032 6.032 11 C -0.002 4.002 12 C -0.090 4.090 13 C -0.210 4.210 14 C 0.111 3.889 15 C -0.458 4.458 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.799 5.799 19 Si 0.913 3.087 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.141 4.141 24 C -0.120 4.120 25 C 0.057 3.943 26 C -0.165 4.165 27 C -0.145 4.145 28 C -0.102 4.102 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.281 0.719 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -8.415 -9.329 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.224 6.224 3 C 0.132 3.868 4 C -0.249 4.249 5 C 0.007 3.993 6 C -0.783 4.783 7 S 2.780 3.220 8 O -0.947 6.947 9 O -0.967 6.967 10 N -0.784 5.784 11 C -0.097 4.097 12 C -0.112 4.112 13 C -0.231 4.231 14 C 0.108 3.892 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.145 4.145 18 N -0.425 5.425 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.161 4.161 24 C -0.141 4.141 25 C 0.056 3.944 26 C -0.221 4.221 27 C -0.146 4.146 28 C -0.159 4.159 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.945 -7.979 -10.147 13.054 hybrid contribution -0.749 -0.647 1.106 1.484 sum 1.196 -8.627 -9.041 12.554 Atomic orbital electron populations 1.23138 0.78043 1.04047 1.01924 1.86052 1.21707 1.26888 1.87764 1.19003 0.91861 0.84147 0.91766 1.21254 1.00281 0.92185 1.11197 1.20693 0.92315 0.98299 0.87988 1.30541 1.04818 1.20888 1.22078 1.02404 0.73335 0.74061 0.72245 1.93524 1.58480 1.56848 1.85835 1.93493 1.62583 1.87482 1.53182 1.52341 1.18379 1.88234 1.19477 1.16787 1.00527 1.06692 0.85720 1.20285 0.99215 0.97455 0.94234 1.20715 1.01732 1.04057 0.96589 1.17741 0.90078 0.88165 0.93253 1.19521 0.92218 1.43005 0.94139 0.90425 1.25903 0.97868 0.92406 0.98304 1.69799 1.07964 1.35732 1.29042 0.86293 0.78067 0.79880 0.82019 1.18841 1.20339 1.19092 1.21038 1.01362 1.00788 0.92902 1.21182 0.95947 0.98320 0.98650 1.19087 0.95373 0.90576 0.89373 1.21535 0.90503 1.05930 1.04103 1.19068 0.90579 0.95774 1.09171 1.20601 0.99076 0.94143 1.02069 0.92425 0.88101 0.92030 0.84731 0.83728 0.75407 0.88964 0.88571 0.90783 0.85883 0.85852 0.89155 0.89726 0.88647 0.91545 0.91242 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.08 9.54 -19.42 -0.19 -4.26 16 3 C 0.18 2.69 6.66 -39.22 -0.26 2.43 16 4 C -0.23 -3.49 9.04 -39.44 -0.36 -3.85 16 5 C 0.03 0.45 9.54 -39.61 -0.38 0.07 16 6 C -0.70 -12.04 5.77 -39.56 -0.23 -12.27 16 7 S 2.69 47.56 4.86 -107.50 -0.52 47.03 16 8 O -0.96 -19.38 14.05 -57.17 -0.80 -20.18 16 9 O -0.98 -17.60 15.62 -57.17 -0.89 -18.49 16 10 N -1.03 -17.57 5.36 32.51 0.17 -17.40 16 11 C 0.00 -0.03 6.14 -83.69 -0.51 -0.55 16 12 C -0.09 -1.85 9.90 -39.77 -0.39 -2.24 16 13 C -0.21 -4.83 9.74 -39.26 -0.38 -5.21 16 14 C 0.11 2.82 5.52 -106.79 -0.59 2.23 16 15 C -0.46 -11.66 9.03 -37.87 -0.34 -12.00 16 16 H 0.08 1.88 7.86 -52.49 -0.41 1.47 16 17 C 0.07 1.76 5.29 -17.34 -0.09 1.66 16 18 N -0.80 -20.15 10.89 55.54 0.61 -19.54 16 19 Si 0.91 18.21 29.57 -169.99 -5.03 13.18 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 23 C -0.14 -3.55 8.58 -39.26 -0.34 -3.89 16 24 C -0.12 -2.78 9.13 -39.77 -0.36 -3.14 16 25 C 0.06 0.90 5.87 -104.64 -0.61 0.29 16 26 C -0.16 -2.13 8.36 36.00 0.30 -1.83 16 27 C -0.14 -2.16 5.89 -104.48 -0.62 -2.78 16 28 C -0.10 -1.20 8.98 36.00 0.32 -0.88 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 32 H 0.13 1.68 6.30 -52.48 -0.33 1.35 16 33 H 0.15 2.36 7.34 -52.48 -0.39 1.98 16 34 H 0.41 5.67 8.95 -34.47 -0.31 5.37 16 35 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 38 H 0.12 3.23 6.35 -52.49 -0.33 2.90 16 39 H 0.12 2.83 5.70 -52.49 -0.30 2.53 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.89 6.97 -51.93 -0.36 0.53 16 42 H 0.10 1.29 4.83 -51.93 -0.25 1.04 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 45 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -30.78 377.28 -10.29 -41.07 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.47 Total: 13.66 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: -3.85 Total: -40.76 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.78 Total: -36.94 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.88 Total: -42.93 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: 47.56 SS G_CDS: -0.52 Total: 47.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.78 -10.29 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117227939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.448 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds