Wall clock time and date at job start Tue Mar 31 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 117.00255 * 2 1 4 4 C 1.38754 * 120.05694 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.94674 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05492 * 0.03090 * 5 4 3 7 7 S 1.76202 * 119.94450 * 179.97438 * 6 5 4 8 8 O 1.42098 * 106.40460 * 4.65834 * 7 6 5 9 9 O 1.42103 * 106.40322 * 231.73900 * 7 6 5 10 10 N 1.65603 * 107.21978 * 118.19905 * 7 6 5 11 11 C 1.38852 * 119.99951 * 297.68547 * 10 7 6 12 12 C 1.39568 * 119.84213 * 133.13569 * 11 10 7 13 13 C 1.36339 * 120.15886 * 180.25152 * 12 11 10 14 14 C 1.40893 * 119.83675 * 359.49907 * 13 12 11 15 15 C 1.41138 * 120.15505 * 180.25150 * 14 13 12 16 16 H 1.07999 * 120.00255 * 32.41799 * 15 14 13 17 17 C 1.39865 * 119.99806 * 212.41922 * 15 14 13 18 18 N 1.30907 * 120.00347 * 7.38655 * 17 15 14 19 19 Si 1.86799 * 119.99825 * 187.38190 * 17 15 14 20 20 H 1.48501 * 109.47318 * 60.00145 * 19 17 15 21 21 H 1.48503 * 109.47050 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46991 * 299.99819 * 19 17 15 23 23 C 1.40887 * 119.68822 * 0.47506 * 14 13 12 24 24 C 1.36339 * 119.83610 * 359.77947 * 23 14 13 25 25 C 1.38247 * 120.11420 * 0.24678 * 6 5 4 26 26 C 1.50698 * 119.97568 * 179.72950 * 25 6 5 27 27 C 1.38173 * 120.05146 * 359.45165 * 25 6 5 28 28 C 1.50692 * 120.02698 * 180.28953 * 27 25 6 29 29 H 1.09001 * 109.46888 * 59.99816 * 1 2 3 30 30 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46948 * 300.00318 * 1 2 3 32 32 H 1.08008 * 120.02740 * 359.96348 * 4 3 2 33 33 H 1.08005 * 119.97442 * 180.02562 * 5 4 3 34 34 H 0.96999 * 119.99262 * 117.67832 * 10 7 6 35 35 H 1.07998 * 119.92132 * 359.97066 * 12 11 10 36 36 H 1.08001 * 120.08151 * 179.74101 * 13 12 11 37 37 H 0.96993 * 120.00560 * 180.02562 * 18 17 15 38 38 H 1.07994 * 120.08289 * 179.75071 * 23 14 13 39 39 H 1.07998 * 119.92016 * 179.97438 * 24 23 14 40 40 H 1.09004 * 109.47303 * 94.27795 * 26 25 6 41 41 H 1.08997 * 109.46814 * 214.28050 * 26 25 6 42 42 H 1.09003 * 109.46932 * 334.28237 * 26 25 6 43 43 H 1.09002 * 109.47742 * 270.27805 * 28 27 25 44 44 H 1.09001 * 109.46998 * 30.28354 * 28 27 25 45 45 H 1.09003 * 109.47070 * 150.28048 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 -0.0005 5 6 1.9210 3.6047 0.0000 6 6 3.3020 3.6757 0.0004 7 16 4.1020 5.2456 0.0004 8 8 3.0737 6.2200 0.1106 9 8 5.0367 5.2197 -1.0696 10 7 4.9901 5.3433 1.3948 11 6 4.3535 5.2994 2.6279 12 6 4.8472 4.4692 3.6353 13 6 4.2241 4.4173 4.8469 14 6 3.0853 5.2123 5.0841 15 6 2.4382 5.1677 6.3376 16 1 3.0119 4.9925 7.2357 17 6 1.0538 5.3505 6.4167 18 7 0.3388 5.4182 5.3223 19 14 0.2250 5.4978 8.0843 20 1 0.7832 6.6651 8.8132 21 1 -1.2363 5.6837 7.8961 22 1 0.4691 4.2611 8.8693 23 6 2.5928 6.0483 4.0626 24 6 3.2230 6.0861 2.8542 25 6 4.0561 2.5170 -0.0048 26 6 5.5609 2.5980 -0.0105 27 6 3.4312 1.2847 0.0009 28 6 4.2537 0.0220 0.0018 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2129 2.3204 -0.0016 33 1 1.3341 4.5114 0.0000 34 1 5.9551 5.4310 1.3499 35 1 5.7224 3.8631 3.4533 36 1 4.6049 3.7713 5.6242 37 1 -0.6212 5.5453 5.3771 38 1 1.7180 6.6573 4.2362 39 1 2.8464 6.7262 2.0701 40 1 5.9318 2.5389 1.0128 41 1 5.9670 1.7708 -0.5926 42 1 5.8722 3.5430 -0.4558 43 1 4.4528 -0.2828 -1.0257 44 1 5.1974 0.2035 0.5162 45 1 3.7060 -0.7681 0.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117227939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:39 Heat of formation + Delta-G solvation = -86.845764 kcal Electronic energy + Delta-G solvation = -30820.205273 eV Core-core repulsion = 26700.848890 eV Total energy + Delta-G solvation = -4119.356383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47570 -39.82875 -38.94811 -38.35226 -37.01497 -36.50382 -34.62726 -34.40974 -32.67066 -31.40491 -30.50169 -28.73463 -28.59611 -27.07874 -26.53582 -23.66430 -23.05603 -22.68168 -22.06280 -20.38545 -19.20901 -18.82432 -18.71399 -18.61697 -18.12820 -17.55084 -16.99072 -16.88887 -16.18504 -15.78241 -15.37735 -15.32976 -15.21296 -15.04921 -14.55516 -14.39186 -14.17059 -14.10823 -14.03573 -13.71922 -13.57070 -13.45168 -13.25297 -13.23719 -13.10450 -13.07166 -12.83024 -12.79053 -12.51759 -12.43184 -12.27032 -12.17569 -12.05645 -11.90954 -11.67845 -11.51569 -11.06707 -10.70904 -9.81491 -9.51371 -9.46772 -8.91278 -8.56023 -6.30975 -0.65652 -0.15798 0.17368 0.91896 1.17011 1.40574 1.51546 1.52326 1.95318 2.13703 2.23355 2.32339 2.68722 2.77436 3.39764 3.62133 3.64491 3.70496 3.95017 4.08596 4.16788 4.29971 4.32240 4.41766 4.45454 4.56106 4.57913 4.64445 4.67599 4.68933 4.73428 4.82235 4.96426 5.05609 5.08885 5.10938 5.16736 5.19070 5.32096 5.34574 5.38095 5.61371 5.73285 5.81092 6.02816 6.12269 6.19458 6.33046 6.42562 6.71368 6.95826 7.04326 8.40257 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009135 B = 0.004012 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.422153 B = 6977.082753 C = 8523.777140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.237 4.237 5 C 0.001 3.999 6 C -0.716 4.716 7 S 2.704 3.296 8 O -0.988 6.988 9 O -0.978 6.978 10 N -1.024 6.024 11 C 0.021 3.979 12 C -0.085 4.085 13 C -0.217 4.217 14 C 0.080 3.920 15 C -0.495 4.495 16 H 0.080 0.920 17 C 0.031 3.969 18 N -0.836 5.836 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.259 1.259 23 C -0.162 4.162 24 C -0.133 4.133 25 C 0.048 3.952 26 C -0.169 4.169 27 C -0.155 4.155 28 C -0.101 4.101 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.057 0.943 32 H 0.155 0.845 33 H 0.137 0.863 34 H 0.428 0.572 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.285 0.715 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -10.720 -9.602 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.228 6.228 3 C 0.127 3.873 4 C -0.257 4.257 5 C -0.018 4.018 6 C -0.805 4.805 7 S 2.799 3.201 8 O -0.978 6.978 9 O -0.968 6.968 10 N -0.779 5.779 11 C -0.074 4.074 12 C -0.107 4.107 13 C -0.237 4.237 14 C 0.077 3.923 15 C -0.525 4.525 16 H 0.098 0.902 17 C -0.183 4.183 18 N -0.463 5.463 19 Si 0.804 3.196 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.184 1.184 23 C -0.182 4.182 24 C -0.154 4.154 25 C 0.047 3.953 26 C -0.225 4.225 27 C -0.156 4.156 28 C -0.157 4.157 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.267 0.733 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.333 -10.265 -10.419 15.001 hybrid contribution -1.124 -0.035 0.967 1.483 sum 2.208 -10.301 -9.452 14.153 Atomic orbital electron populations 1.23462 0.76132 1.06174 1.02350 1.86057 1.23660 1.25796 1.87240 1.19225 0.92404 0.84669 0.90999 1.21498 1.01530 0.91802 1.10847 1.20811 0.92670 0.98928 0.89434 1.30374 1.05047 1.20771 1.24309 1.01529 0.72753 0.73855 0.71950 1.93487 1.59538 1.58643 1.86177 1.93495 1.62652 1.87710 1.52919 1.52153 1.19408 1.88345 1.17969 1.16725 0.99071 1.04819 0.86826 1.20620 1.00019 0.97108 0.92906 1.20954 1.01106 1.03739 0.97941 1.18046 0.91515 0.89140 0.93614 1.19780 0.93221 1.45096 0.94396 0.90205 1.26733 0.98102 0.91516 1.01913 1.69888 1.08335 1.36960 1.31122 0.85237 0.77065 0.79974 0.77329 1.18448 1.19685 1.18366 1.20914 1.01509 1.01667 0.94150 1.21253 0.97152 0.99097 0.97896 1.19467 0.96853 0.90222 0.88780 1.21672 0.88563 1.06708 1.05532 1.19519 0.91043 0.96827 1.08245 1.20685 0.99211 0.92438 1.03391 0.91169 0.85201 0.92436 0.82781 0.84510 0.73273 0.84693 0.87271 0.90449 0.88209 0.86311 0.87574 0.87018 0.89378 0.89864 0.89596 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.62 9.54 -92.40 -0.88 -8.50 16 3 C 0.17 5.00 6.66 22.51 0.15 5.15 16 4 C -0.24 -7.15 9.04 22.36 0.20 -6.95 16 5 C 0.00 0.04 9.54 22.25 0.21 0.25 16 6 C -0.72 -24.40 5.77 22.28 0.13 -24.27 16 7 S 2.70 94.40 4.86 -56.49 -0.27 94.13 16 8 O -0.99 -40.98 14.05 -128.00 -1.80 -42.78 16 9 O -0.98 -33.95 15.62 -128.00 -2.00 -35.95 16 10 N -1.02 -33.28 5.36 -51.06 -0.27 -33.56 16 11 C 0.02 0.87 6.14 38.67 0.24 1.11 16 12 C -0.08 -3.32 9.90 22.15 0.22 -3.10 16 13 C -0.22 -9.85 9.74 22.48 0.22 -9.63 16 14 C 0.08 4.16 5.52 -21.27 -0.12 4.05 16 15 C -0.49 -25.91 9.03 23.38 0.21 -25.70 16 16 H 0.08 3.97 7.86 -2.91 -0.02 3.94 16 17 C 0.03 1.53 5.29 85.22 0.45 1.98 16 18 N -0.84 -43.95 10.89 21.82 0.24 -43.71 16 19 Si 0.98 37.93 29.57 68.60 2.03 39.96 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 C -0.16 -8.57 8.58 22.48 0.19 -8.37 16 24 C -0.13 -6.32 9.13 22.15 0.20 -6.12 16 25 C 0.05 1.42 5.87 -19.88 -0.12 1.31 16 26 C -0.17 -3.82 8.36 71.24 0.60 -3.22 16 27 C -0.15 -4.30 5.89 -19.77 -0.12 -4.42 16 28 C -0.10 -2.04 8.98 71.23 0.64 -1.40 16 29 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.01 7.66 -2.39 -0.02 1.00 16 32 H 0.15 3.79 6.30 -2.91 -0.02 3.77 16 33 H 0.14 4.75 7.34 -2.91 -0.02 4.73 16 34 H 0.43 10.72 8.95 -96.75 -0.87 9.86 16 35 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 38 H 0.10 5.63 6.35 -2.91 -0.02 5.61 16 39 H 0.12 5.70 5.70 -2.91 -0.02 5.68 16 40 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.11 1.89 6.97 -2.39 -0.02 1.87 16 42 H 0.09 2.13 4.83 -2.39 -0.01 2.12 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 1.44 6.80 -2.39 -0.02 1.43 16 45 H 0.07 1.42 7.53 -2.39 -0.02 1.40 16 Total: -1.00 -68.67 377.28 1.64 -67.03 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: 0.18 Total: 41.41 kcal Atomic # 6 Polarization: -82.44 SS G_CDS: 4.42 Total: -78.01 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -0.04 Total: -77.27 kcal Atomic # 8 Polarization: -82.56 SS G_CDS: -4.68 Total: -87.24 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 94.40 SS G_CDS: -0.27 Total: 94.13 kcal Total: -68.67 1.64 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117227939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.819 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds