Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00741 * 2 1 4 4 H 1.48498 * 109.47237 * 240.00407 * 3 2 1 5 5 H 1.48502 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47105 * 119.99899 * 3 2 1 7 7 C 1.37883 * 119.99237 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99621 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00442 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97450 * 125.00086 * 10 9 7 12 12 C 1.35241 * 107.85615 * 180.02562 * 11 10 9 13 13 C 1.40399 * 107.87260 * 0.02562 * 12 11 10 14 14 N 1.40188 * 125.97794 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99856 * 359.97438 * 14 13 12 16 16 O 1.21592 * 119.99791 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00337 * 180.02562 * 15 14 13 18 18 C 1.47020 * 125.64350 * 359.96487 * 17 15 14 19 19 C 1.54330 * 107.26889 * 178.97093 * 18 17 15 20 20 C 1.55157 * 102.94049 * 337.80715 * 19 18 17 21 21 H 1.09001 * 111.00051 * 277.42489 * 20 19 18 22 22 C 1.53003 * 110.99933 * 153.61139 * 20 19 18 23 23 N 1.46901 * 109.46688 * 174.99416 * 22 20 19 24 24 C 1.46844 * 111.00724 * 294.21299 * 23 22 20 25 25 C 1.53030 * 109.52621 * 174.15727 * 24 23 22 26 26 C 1.53125 * 109.27731 * 59.18263 * 25 24 23 27 27 C 1.53118 * 109.15843 * 302.34181 * 26 25 24 28 28 C 1.46851 * 111.00181 * 169.99827 * 23 22 20 29 29 C 1.47420 * 125.64841 * 179.97438 * 17 15 14 30 30 N 1.31213 * 108.05227 * 0.25804 * 13 12 11 31 31 H 0.97007 * 119.99414 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46610 * 60.00049 * 9 7 2 33 33 H 1.08999 * 109.46820 * 300.00415 * 9 7 2 34 34 H 1.08000 * 126.07120 * 0.02562 * 11 10 9 35 35 H 1.08008 * 126.06326 * 179.97438 * 12 11 10 36 36 H 0.97003 * 120.00647 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.88574 * 59.55643 * 18 17 15 38 38 H 1.09002 * 109.88232 * 298.38486 * 18 17 15 39 39 H 1.08996 * 110.71860 * 219.43769 * 19 18 17 40 40 H 1.09002 * 110.71679 * 96.16768 * 19 18 17 41 41 H 1.08999 * 109.47209 * 294.99461 * 22 20 19 42 42 H 1.09004 * 109.47116 * 55.00373 * 22 20 19 43 43 H 1.08998 * 109.46126 * 294.17965 * 24 23 22 44 44 H 1.09004 * 109.46124 * 54.14331 * 24 23 22 45 45 H 1.08996 * 109.51035 * 299.23644 * 25 24 23 46 46 H 1.09000 * 109.53457 * 179.13772 * 25 24 23 47 47 H 1.09002 * 109.51811 * 182.43829 * 26 25 24 48 48 H 1.09000 * 109.57384 * 62.27814 * 26 25 24 49 49 H 1.08999 * 109.50553 * 297.71160 * 27 26 25 50 50 H 1.08996 * 109.50412 * 177.59449 * 27 26 25 51 51 H 1.09004 * 109.46167 * 305.86008 * 28 23 22 52 52 H 1.08999 * 109.45657 * 65.82876 * 28 23 22 53 53 H 1.09003 * 110.36227 * 85.26111 * 29 17 15 54 54 H 1.08990 * 110.46498 * 322.98607 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4993 -0.0005 10 7 2.2027 -3.6128 -0.0005 11 6 2.2416 -4.6225 0.8942 12 6 3.2606 -5.4425 0.5500 13 6 3.8694 -4.9141 -0.5995 14 7 4.9656 -5.4648 -1.2779 15 6 5.5300 -6.6050 -0.8328 16 8 5.0881 -7.1561 0.1568 17 7 6.5843 -7.1342 -1.4847 18 6 7.2159 -6.5749 -2.6888 19 6 8.3936 -7.5005 -3.0604 20 6 8.7096 -8.2158 -1.7203 21 1 9.3436 -7.5958 -1.0866 22 6 9.3535 -9.5818 -1.9665 23 7 9.7470 -10.1761 -0.6820 24 6 10.8118 -9.3920 -0.0434 25 6 11.0938 -9.9535 1.3520 26 6 11.5171 -11.4201 1.2307 27 6 10.4116 -12.2050 0.5192 28 6 10.1493 -11.5782 -0.8521 29 6 7.2950 -8.3699 -1.1086 30 7 3.2361 -3.8120 -0.9249 31 1 -0.4849 0.8402 -0.0004 32 1 0.6238 -2.5567 -0.8903 33 1 0.6244 -2.5571 0.8896 34 1 1.5771 -4.7526 1.7356 35 1 3.5544 -6.3435 1.0681 36 1 5.3180 -5.0254 -2.0676 37 1 7.5851 -5.5706 -2.4813 38 1 6.4952 -6.5458 -3.5060 39 1 9.2505 -6.9176 -3.3980 40 1 8.0925 -8.2213 -3.8207 41 1 8.6386 -10.2358 -2.4656 42 1 10.2352 -9.4597 -2.5956 43 1 11.7171 -9.4491 -0.6477 44 1 10.4964 -8.3520 0.0406 45 1 10.1927 -9.8840 1.9613 46 1 11.8947 -9.3812 1.8201 47 1 11.6771 -11.8364 2.2252 48 1 12.4401 -11.4873 0.6547 49 1 9.4997 -12.1710 1.1153 50 1 10.7252 -13.2410 0.3917 51 1 9.3526 -12.1260 -1.3554 52 1 11.0577 -11.6250 -1.4526 53 1 6.7921 -9.2400 -1.5306 54 1 7.3581 -8.4581 -0.0241 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120151795.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = 36.690374 kcal Electronic energy + Delta-G solvation = -31959.177423 eV Core-core repulsion = 27738.676789 eV Total energy + Delta-G solvation = -4220.500634 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.222 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.25644 -41.21903 -40.04453 -38.58634 -36.21879 -35.34862 -34.91372 -33.01878 -32.11632 -31.67355 -30.93912 -30.08684 -28.61086 -27.00921 -25.26550 -24.55591 -24.00778 -23.26012 -22.59090 -21.81916 -21.02054 -20.62084 -20.46046 -19.04540 -18.67457 -18.13853 -17.53918 -17.05116 -16.90440 -16.47039 -16.20636 -15.95676 -15.85003 -15.50246 -15.31024 -14.93391 -14.70162 -14.47011 -14.40412 -14.26989 -14.11285 -14.00641 -13.86260 -13.79224 -13.58049 -13.25316 -13.05414 -12.92648 -12.71929 -12.54685 -12.27566 -12.19078 -12.08323 -12.07551 -11.90781 -11.67625 -11.62389 -11.54855 -11.40678 -11.21408 -11.11563 -11.04515 -10.71222 -9.85971 -9.66513 -9.17461 -9.03564 -8.31836 -6.46089 1.04875 1.10055 1.38642 1.40772 1.49569 1.68164 2.04119 2.36083 2.38371 2.86731 2.96147 2.99713 3.61772 3.63848 3.82227 3.94029 3.97290 4.05187 4.08799 4.26516 4.26961 4.33484 4.39077 4.46684 4.53546 4.63598 4.66439 4.71644 4.72443 4.75512 4.77892 4.87067 4.89766 4.93336 4.94570 4.97295 5.00484 5.02860 5.07997 5.09097 5.11781 5.15432 5.26707 5.33640 5.35902 5.43166 5.50899 5.57166 5.77616 5.89327 5.96303 6.21381 6.23372 6.29341 6.61476 6.69010 7.10292 7.23587 7.37909 8.75422 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.001602 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.686745 B =17473.555616 C =17646.267048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.635 5.635 15 C 0.725 3.275 16 O -0.602 6.602 17 N -0.630 5.630 18 C 0.084 3.916 19 C -0.111 4.111 20 C -0.088 4.088 21 H 0.084 0.916 22 C 0.073 3.927 23 N -0.553 5.553 24 C 0.055 3.945 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.118 4.118 28 C 0.058 3.942 29 C 0.142 3.858 30 N -0.347 5.347 31 H 0.273 0.727 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.202 0.798 35 H 0.164 0.836 36 H 0.418 0.582 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.037 0.963 53 H 0.068 0.932 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.761 -23.728 -5.593 35.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.029 3.971 14 N -0.286 5.286 15 C 0.426 3.574 16 O -0.481 6.481 17 N -0.368 5.368 18 C -0.038 4.038 19 C -0.149 4.149 20 C -0.107 4.107 21 H 0.102 0.898 22 C -0.055 4.055 23 N -0.278 5.278 24 C -0.073 4.073 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.155 4.155 28 C -0.070 4.070 29 C 0.020 3.980 30 N -0.178 5.178 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.219 0.781 35 H 0.181 0.819 36 H 0.255 0.745 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.055 0.945 53 H 0.086 0.914 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 24.677 -22.934 -5.371 34.114 hybrid contribution 0.706 0.601 -0.137 0.937 sum 25.383 -22.332 -5.507 34.254 Atomic orbital electron populations 1.69992 1.07196 1.28808 1.49845 1.25741 0.95861 1.02701 0.93872 0.85398 0.78283 0.77841 0.78887 1.19823 1.19735 1.19545 1.21379 0.93381 0.90998 1.52960 0.92976 1.19343 0.85655 0.81461 0.98138 1.48827 1.23628 1.20348 1.19772 1.23140 1.00348 0.88862 0.96663 1.21667 1.02270 1.06668 1.01933 1.19077 0.90842 0.93002 0.94203 1.41378 1.30461 1.25258 1.31549 1.15305 0.80014 0.79708 0.82337 1.90830 1.65400 1.63449 1.28393 1.47613 1.30835 1.28022 1.30348 1.22384 0.96313 0.98730 0.86338 1.22649 0.97130 0.98392 0.96704 1.22355 0.94095 0.97133 0.97153 0.89753 1.22006 0.99596 0.94001 0.89933 1.61878 1.39696 1.02615 1.23646 1.22116 0.92360 0.97641 0.95187 1.21589 1.01183 0.96498 0.96484 1.21565 0.98229 0.95100 1.00820 1.21585 0.98918 0.99137 0.95903 1.22081 0.99436 0.88302 0.97179 1.22103 0.91262 0.84439 1.00210 1.77241 1.04858 1.17813 1.17865 0.91841 0.96006 0.92320 0.78109 0.81876 0.74512 0.90770 0.90292 0.87627 0.88683 0.89651 0.92755 0.94453 0.90912 0.92587 0.91004 0.91666 0.91841 0.92352 0.90521 0.90380 0.94487 0.91403 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 2 C 0.02 1.04 5.46 84.66 0.46 1.51 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -31.47 9.23 25.60 0.24 -31.24 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.45 6.26 85.63 0.54 14.99 16 10 N -0.34 -16.70 3.67 -351.85 -1.29 -18.00 16 11 C 0.06 2.42 11.44 83.52 0.96 3.38 16 12 C -0.29 -12.37 9.60 22.10 0.21 -12.15 16 13 C 0.28 12.12 8.11 133.31 1.08 13.20 16 14 N -0.63 -21.42 5.41 -321.23 -1.74 -23.16 16 15 C 0.73 23.64 8.46 179.05 1.51 25.15 16 16 O -0.60 -23.98 13.73 -4.00 -0.05 -24.04 16 17 N -0.63 -14.35 3.33 -829.79 -2.76 -17.11 16 18 C 0.08 1.18 6.15 86.73 0.53 1.71 16 19 C -0.11 -0.85 6.42 31.78 0.20 -0.65 16 20 C -0.09 -0.99 2.98 -9.41 -0.03 -1.01 16 21 H 0.08 1.06 6.19 -2.39 -0.01 1.04 16 22 C 0.07 0.65 4.42 86.30 0.38 1.03 16 23 N -0.55 -6.66 4.60 -896.36 -4.13 -10.78 16 24 C 0.05 0.64 5.31 86.32 0.46 1.09 16 25 C -0.12 -1.44 6.09 30.65 0.19 -1.25 16 26 C -0.12 -1.21 6.00 30.68 0.18 -1.03 16 27 C -0.12 -1.22 6.09 30.64 0.19 -1.03 16 28 C 0.06 0.58 5.46 86.32 0.47 1.05 16 29 C 0.14 2.72 6.32 86.85 0.55 3.27 16 30 N -0.35 -16.77 12.41 -54.44 -0.68 -17.44 16 31 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 32 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 3.03 8.07 -2.39 -0.02 3.01 16 34 H 0.20 6.60 8.06 -2.91 -0.02 6.58 16 35 H 0.16 6.81 5.91 -2.91 -0.02 6.79 16 36 H 0.42 11.63 7.81 -92.71 -0.72 10.90 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.51 8.04 -2.39 -0.02 0.49 16 41 H 0.09 0.70 7.81 -2.39 -0.02 0.68 16 42 H 0.05 0.37 8.12 -2.38 -0.02 0.35 16 43 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.91 6.10 -2.39 -0.01 0.89 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.08 0.73 8.02 -2.38 -0.02 0.71 16 52 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 53 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 54 H 0.06 1.42 8.04 -2.39 -0.02 1.41 16 Total: -1.00 -73.16 425.00 -0.04 -73.20 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.17 Total: 25.60 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 8.12 Total: 18.02 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -10.31 Total: -138.79 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.16 -0.04 -73.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120151795.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.891 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds