Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00266 * 2 1 4 4 H 1.48497 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47286 * 300.00070 * 3 2 1 6 6 H 1.48507 * 109.47034 * 59.99595 * 3 2 1 7 7 C 1.37876 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00155 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46934 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97185 * 125.03187 * 10 9 7 12 12 C 1.35250 * 107.85542 * 180.02562 * 11 10 9 13 13 C 1.40403 * 107.86675 * 359.97438 * 12 11 10 14 14 N 1.40194 * 125.96981 * 179.97438 * 13 12 11 15 15 C 1.34782 * 120.00039 * 0.02562 * 14 13 12 16 16 O 1.21587 * 119.99846 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99786 * 180.02562 * 15 14 13 18 18 C 1.47014 * 125.64944 * 0.02562 * 17 15 14 19 19 C 1.54324 * 107.27067 * 181.02366 * 18 17 15 20 20 C 1.55159 * 102.94330 * 22.19441 * 19 18 17 21 21 H 1.09003 * 111.00447 * 82.60793 * 20 19 18 22 22 C 1.52996 * 111.00526 * 206.42526 * 20 19 18 23 23 N 1.46900 * 109.47424 * 184.11551 * 22 20 19 24 24 C 1.46841 * 111.00115 * 199.99085 * 23 22 20 25 25 C 1.53040 * 109.52352 * 174.15607 * 24 23 22 26 26 C 1.53119 * 109.27533 * 59.17737 * 25 24 23 27 27 C 1.53116 * 109.16282 * 302.34606 * 26 25 24 28 28 C 1.46847 * 110.99970 * 75.77271 * 23 22 20 29 29 C 1.47426 * 125.64371 * 179.71528 * 17 15 14 30 30 N 1.31207 * 108.05643 * 0.02562 * 13 12 11 31 31 H 0.96995 * 119.99498 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.46816 * 60.00638 * 9 7 2 33 33 H 1.08994 * 109.47374 * 300.00105 * 9 7 2 34 34 H 1.07994 * 126.07260 * 359.97301 * 11 10 9 35 35 H 1.08000 * 126.06353 * 180.02562 * 12 11 10 36 36 H 0.97002 * 119.99896 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.88453 * 300.44063 * 18 17 15 38 38 H 1.08998 * 109.88540 * 61.60618 * 18 17 15 39 39 H 1.09009 * 110.72031 * 140.55250 * 19 18 17 40 40 H 1.09004 * 110.72449 * 263.64935 * 19 18 17 41 41 H 1.09001 * 109.47295 * 304.11360 * 22 20 19 42 42 H 1.09004 * 109.47494 * 64.11096 * 22 20 19 43 43 H 1.09003 * 109.46318 * 294.17174 * 24 23 22 44 44 H 1.08998 * 109.46631 * 54.14281 * 24 23 22 45 45 H 1.09000 * 109.50550 * 299.24136 * 25 24 23 46 46 H 1.09001 * 109.53565 * 179.13357 * 25 24 23 47 47 H 1.09005 * 109.52577 * 182.44051 * 26 25 24 48 48 H 1.09003 * 109.52429 * 62.25407 * 26 25 24 49 49 H 1.09000 * 109.50375 * 297.71085 * 27 26 25 50 50 H 1.09005 * 109.53865 * 177.61677 * 27 26 25 51 51 H 1.08996 * 109.46291 * 305.85867 * 28 23 22 52 52 H 1.09004 * 109.46100 * 65.83072 * 28 23 22 53 53 H 1.09004 * 110.36607 * 274.74165 * 29 17 15 54 54 H 1.08996 * 110.36918 * 37.06353 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.2416 -4.6219 0.8980 12 6 3.2608 -5.4421 0.5547 13 6 3.8692 -4.9149 -0.5955 14 7 4.9662 -5.4656 -1.2728 15 6 5.5311 -6.6050 -0.8263 16 8 5.0895 -7.1550 0.1641 17 7 6.5860 -7.1342 -1.4772 18 6 7.2187 -6.5750 -2.6806 19 6 8.3640 -7.5286 -3.0813 20 6 7.9522 -8.8666 -2.4123 21 1 7.2331 -9.4065 -3.0285 22 6 9.1784 -9.7333 -2.1190 23 7 8.7447 -11.0285 -1.5784 24 6 9.8386 -11.6902 -0.8560 25 6 9.3133 -12.9616 -0.1855 26 6 8.7426 -13.8979 -1.2543 27 6 7.6383 -13.1681 -2.0240 28 6 8.2121 -11.8907 -2.6412 29 6 7.3005 -8.3662 -1.0964 30 7 3.2324 -3.8160 -0.9251 31 1 -0.4849 0.8400 -0.0004 32 1 0.6241 -2.5575 -0.8881 33 1 0.6246 -2.5563 0.8919 34 1 1.5773 -4.7511 1.7396 35 1 3.5539 -6.3431 1.0729 36 1 5.3187 -5.0267 -2.0627 37 1 6.4891 -6.5121 -3.4880 38 1 7.6197 -5.5851 -2.4627 39 1 8.4132 -7.6383 -4.1648 40 1 9.3166 -7.1744 -2.6873 41 1 9.7389 -9.8934 -3.0401 42 1 9.8135 -9.2297 -1.3902 43 1 10.6317 -11.9504 -1.5571 44 1 10.2327 -11.0153 -0.0963 45 1 8.5296 -12.7008 0.5258 46 1 10.1286 -13.4611 0.3380 47 1 8.3281 -14.7859 -0.7770 48 1 9.5350 -14.1900 -1.9434 49 1 6.8283 -12.9105 -1.3416 50 1 7.2566 -13.8145 -2.8143 51 1 7.4249 -11.3613 -3.1779 52 1 9.0128 -12.1500 -3.3339 53 1 8.0652 -8.1464 -0.3513 54 1 6.5997 -9.1085 -0.7144 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120151918.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = 35.565081 kcal Electronic energy + Delta-G solvation = -31915.849753 eV Core-core repulsion = 27695.300322 eV Total energy + Delta-G solvation = -4220.549430 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.222 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.25421 -41.20326 -40.01322 -38.58931 -36.21810 -35.34652 -34.90194 -33.01951 -32.10553 -31.67674 -30.93884 -30.08857 -28.61534 -26.99203 -25.24286 -24.54588 -23.98492 -23.25610 -22.58792 -21.82308 -21.02532 -20.64487 -20.46043 -19.03893 -18.67958 -18.13253 -17.53987 -17.01062 -16.88048 -16.43355 -16.27892 -16.04381 -15.71994 -15.50701 -15.31712 -14.87685 -14.73483 -14.46972 -14.40572 -14.28225 -14.09556 -13.97573 -13.84978 -13.79702 -13.60059 -13.24369 -13.08186 -12.92403 -12.72363 -12.49662 -12.30464 -12.21331 -12.07963 -12.06441 -11.87601 -11.64360 -11.63238 -11.54765 -11.38753 -11.21573 -11.11434 -11.07767 -10.71750 -9.85736 -9.66315 -9.17274 -9.03504 -8.32337 -6.46492 1.05036 1.10360 1.37691 1.38820 1.52222 1.68321 2.04416 2.35985 2.38501 2.86734 2.96404 2.99264 3.63442 3.65185 3.84533 3.94611 3.97423 4.04998 4.09586 4.26758 4.26999 4.34967 4.40350 4.48378 4.53430 4.64320 4.66498 4.72169 4.72655 4.74541 4.77958 4.87324 4.90257 4.94246 4.94753 4.97638 5.00243 5.02608 5.08352 5.09480 5.12069 5.16241 5.27015 5.34129 5.36150 5.43899 5.51285 5.57433 5.77626 5.89488 5.96402 6.22413 6.23961 6.29377 6.61791 6.69297 7.10384 7.23469 7.38197 8.75382 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.001580 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.393839 B =17720.662031 C =18397.640047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.635 5.635 15 C 0.725 3.275 16 O -0.602 6.602 17 N -0.631 5.631 18 C 0.084 3.916 19 C -0.111 4.111 20 C -0.083 4.083 21 H 0.084 0.916 22 C 0.071 3.929 23 N -0.554 5.554 24 C 0.058 3.942 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.119 4.119 28 C 0.057 3.943 29 C 0.142 3.858 30 N -0.347 5.347 31 H 0.272 0.728 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.202 0.798 35 H 0.164 0.836 36 H 0.418 0.582 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.038 0.962 53 H 0.066 0.934 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.479 -25.845 -7.631 35.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.426 3.574 16 O -0.481 6.481 17 N -0.368 5.368 18 C -0.038 4.038 19 C -0.150 4.150 20 C -0.102 4.102 21 H 0.102 0.898 22 C -0.057 4.057 23 N -0.279 5.279 24 C -0.070 4.070 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.157 4.157 28 C -0.071 4.071 29 C 0.020 3.980 30 N -0.178 5.178 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.219 0.781 35 H 0.181 0.819 36 H 0.255 0.745 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.056 0.944 53 H 0.084 0.916 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.437 -24.972 -7.379 34.373 hybrid contribution 0.590 0.429 -0.223 0.763 sum 23.027 -24.543 -7.602 34.502 Atomic orbital electron populations 1.70004 1.07197 1.28692 1.50021 1.25742 0.95854 1.02718 0.93879 0.85281 0.78350 0.78329 0.78317 1.19979 1.19764 1.19512 1.21436 0.93383 0.90997 1.52744 0.93001 1.19353 0.85662 0.81471 0.98159 1.48828 1.23832 1.20342 1.19582 1.23143 1.00341 0.88816 0.96712 1.21670 1.02221 1.06662 1.01995 1.19079 0.90806 0.93071 0.94168 1.41385 1.30407 1.25320 1.31553 1.15308 0.79911 0.79755 0.82402 1.90827 1.65582 1.63361 1.28315 1.47622 1.30569 1.28258 1.30385 1.22379 0.96351 0.98743 0.86283 1.22651 0.97366 0.92361 1.02585 1.22328 0.97609 0.95597 0.94704 0.89807 1.22011 0.94965 0.88997 0.99685 1.61840 1.34528 1.03985 1.27530 1.22089 0.91585 0.95971 0.97344 1.21590 1.00850 0.95186 0.97979 1.21564 0.98177 0.98113 0.97853 1.21590 0.98282 0.95925 0.99913 1.22111 0.98935 0.93743 0.92316 1.22162 0.94679 0.83453 0.97726 1.77235 1.04987 1.17951 1.17622 0.91843 0.95996 0.92290 0.78094 0.81875 0.74519 0.90599 0.90527 0.87569 0.88838 0.92470 0.89879 0.94449 0.90573 0.92437 0.90617 0.91673 0.91817 0.92588 0.90860 0.90868 0.94413 0.91582 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.60 13.29 21.45 0.28 -52.31 16 2 C 0.02 1.02 5.46 84.65 0.46 1.49 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.43 9.23 25.60 0.24 -31.19 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.44 6.26 85.63 0.54 14.97 16 10 N -0.34 -16.74 3.67 -351.84 -1.29 -18.03 16 11 C 0.06 2.43 11.44 83.52 0.96 3.38 16 12 C -0.29 -12.40 9.61 22.11 0.21 -12.19 16 13 C 0.28 12.16 8.11 133.31 1.08 13.24 16 14 N -0.63 -21.52 5.41 -321.23 -1.74 -23.26 16 15 C 0.72 23.74 8.46 179.05 1.51 25.26 16 16 O -0.60 -24.07 13.72 -3.99 -0.05 -24.12 16 17 N -0.63 -14.46 3.32 -829.31 -2.76 -17.21 16 18 C 0.08 1.19 6.15 86.73 0.53 1.73 16 19 C -0.11 -0.87 6.41 31.78 0.20 -0.67 16 20 C -0.08 -0.93 3.11 -9.32 -0.03 -0.95 16 21 H 0.08 1.04 6.73 -2.39 -0.02 1.02 16 22 C 0.07 0.64 4.46 86.30 0.38 1.02 16 23 N -0.55 -6.57 4.52 -896.37 -4.05 -10.62 16 24 C 0.06 0.60 5.43 86.33 0.47 1.06 16 25 C -0.12 -1.25 6.09 30.65 0.19 -1.07 16 26 C -0.12 -1.18 6.00 30.67 0.18 -1.00 16 27 C -0.12 -1.35 6.09 30.65 0.19 -1.16 16 28 C 0.06 0.62 5.29 86.33 0.46 1.08 16 29 C 0.14 2.74 6.32 86.93 0.55 3.29 16 30 N -0.35 -16.81 12.42 -54.44 -0.68 -17.49 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 3.05 8.07 -2.39 -0.02 3.03 16 34 H 0.20 6.61 8.06 -2.91 -0.02 6.59 16 35 H 0.16 6.82 5.91 -2.91 -0.02 6.80 16 36 H 0.42 11.69 7.81 -92.71 -0.72 10.97 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.09 0.53 8.04 -2.39 -0.02 0.51 16 41 H 0.06 0.38 8.00 -2.39 -0.02 0.36 16 42 H 0.08 0.69 7.63 -2.38 -0.02 0.67 16 43 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.08 0.76 7.93 -2.39 -0.02 0.74 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.07 0.83 6.66 -2.39 -0.02 0.81 16 52 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 53 H 0.07 1.26 7.93 -2.38 -0.02 1.24 16 54 H 0.06 1.44 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -73.41 425.75 0.03 -73.38 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.17 Total: 25.30 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 8.12 Total: 18.29 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -10.23 Total: -138.93 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -73.41 0.03 -73.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120151918.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.942 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds