Wall clock time and date at job start Tue Mar 31 2020 05:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 117.00483 * 2 1 4 4 C 1.38757 * 120.05217 * 359.96195 * 3 2 1 5 5 C 1.38121 * 119.94275 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.97149 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05799 * 0.05444 * 5 4 3 8 8 S 1.76198 * 119.94527 * 180.02562 * 7 5 4 9 9 O 1.42099 * 106.40345 * 177.92163 * 8 7 5 10 10 O 1.42100 * 106.39908 * 310.84145 * 8 7 5 11 11 N 1.65596 * 107.21980 * 64.38070 * 8 7 5 12 12 C 1.38854 * 120.00246 * 67.28249 * 11 8 7 13 13 C 1.39566 * 119.84025 * 313.48161 * 12 11 8 14 14 C 1.36343 * 120.16023 * 179.71604 * 13 12 11 15 15 C 1.40885 * 119.83439 * 0.55252 * 14 13 12 16 16 C 1.41142 * 120.15503 * 179.70182 * 15 14 13 17 17 H 1.07999 * 119.99435 * 205.39606 * 16 15 14 18 18 C 1.39863 * 119.99809 * 25.40118 * 16 15 14 19 19 N 1.30898 * 120.00208 * 14.37575 * 18 16 15 20 20 Si 1.86802 * 119.99407 * 194.37497 * 18 16 15 21 21 H 1.48497 * 109.46960 * 90.00212 * 20 18 16 22 22 H 1.48498 * 109.46972 * 209.99627 * 20 18 16 23 23 H 1.48496 * 109.47610 * 329.99930 * 20 18 16 24 24 C 1.40889 * 119.69171 * 359.71899 * 15 14 13 25 25 C 1.36346 * 119.83121 * 0.02562 * 24 15 14 26 26 C 1.38246 * 120.10860 * 359.97438 * 7 5 4 27 27 C 1.38162 * 120.05744 * 359.97403 * 26 7 5 28 28 C 1.50702 * 120.02889 * 179.74663 * 27 26 7 29 29 H 1.09006 * 109.46985 * 299.99799 * 1 2 3 30 30 H 1.09000 * 109.46853 * 59.99797 * 1 2 3 31 31 H 1.08992 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.02668 * 0.03684 * 4 3 2 33 33 H 1.09002 * 109.46992 * 271.02492 * 6 5 4 34 34 H 1.09005 * 109.46895 * 31.02686 * 6 5 4 35 35 H 1.09002 * 109.47024 * 151.02148 * 6 5 4 36 36 H 0.97007 * 119.99979 * 247.29247 * 11 8 7 37 37 H 1.08005 * 119.92345 * 359.97333 * 13 12 11 38 38 H 1.07997 * 120.08611 * 180.27691 * 14 13 12 39 39 H 0.97001 * 119.99755 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.08699 * 179.97438 * 24 15 14 41 41 H 1.08001 * 119.91537 * 179.97438 * 25 24 15 42 42 H 1.07995 * 119.97056 * 179.97438 * 26 7 5 43 43 H 1.09001 * 109.47236 * 90.00093 * 28 27 26 44 44 H 1.08998 * 109.47120 * 210.00038 * 28 27 26 45 45 H 1.09005 * 109.46682 * 329.99934 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0008 5 6 1.9210 3.6047 -0.0003 6 6 1.1021 4.8699 -0.0005 7 6 3.3021 3.6758 -0.0001 8 16 4.1020 5.2457 0.0013 9 8 5.4980 4.9847 0.0507 10 8 3.4900 6.0087 -1.0294 11 7 3.7151 5.9918 1.4281 12 6 4.1896 5.4818 2.6293 13 6 4.0997 4.1130 2.8864 14 6 4.5688 3.6045 4.0613 15 6 5.1347 4.4660 5.0217 16 6 5.6166 3.9477 6.2428 17 1 5.6643 4.5805 7.1167 18 6 6.0325 2.6146 6.3210 19 7 6.2440 1.9296 5.2258 20 14 6.2862 1.8119 7.9886 21 1 5.0169 1.1823 8.4331 22 1 7.3429 0.7739 7.8826 23 1 6.7004 2.8411 8.9757 24 6 5.2169 5.8475 4.7576 25 6 4.7485 6.3413 3.5762 26 6 4.0561 2.5170 0.0001 27 6 3.4312 1.2848 0.0007 28 6 4.2538 0.0221 -0.0049 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2129 2.3204 -0.0008 33 1 0.8899 5.1650 -1.0281 34 1 0.1651 4.6962 0.5286 35 1 1.6591 5.6633 0.4978 36 1 3.1568 6.7851 1.4248 37 1 3.6612 3.4544 2.1513 38 1 4.5026 2.5445 4.2572 39 1 6.5321 1.0050 5.2802 40 1 5.6492 6.5138 5.4894 41 1 4.8105 7.4001 3.3725 42 1 5.1345 2.5751 -0.0001 43 1 4.4564 -0.2841 1.0214 44 1 3.7042 -0.7673 -0.5178 45 1 5.1956 0.2043 -0.5224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121230545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:53 Heat of formation + Delta-G solvation = -67.041746 kcal Electronic energy + Delta-G solvation = -30865.520979 eV Core-core repulsion = 26747.023363 eV Total energy + Delta-G solvation = -4118.497616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.47139 -38.15736 -37.76193 -36.86703 -35.47317 -34.87366 -33.85287 -32.81252 -30.63728 -29.54705 -29.30768 -28.68485 -27.81008 -24.92143 -24.72820 -22.77449 -21.60228 -21.15873 -20.92056 -18.92638 -17.71390 -17.40957 -17.27439 -17.06053 -16.80077 -16.20188 -16.01001 -15.26712 -14.73610 -14.56635 -14.25355 -14.00354 -13.77324 -13.59160 -13.32164 -13.20152 -12.95034 -12.86081 -12.63011 -12.33032 -12.23482 -12.03157 -11.93327 -11.91499 -11.69948 -11.67830 -11.57304 -11.52776 -11.20442 -11.09053 -11.01659 -10.83662 -10.65303 -10.50308 -10.15210 -9.82320 -9.40309 -9.00938 -8.74101 -8.32955 -7.65815 -7.17022 -6.79501 -4.37496 0.73264 1.01691 1.27536 2.64223 3.00053 3.03071 3.04783 3.07884 3.11354 3.29346 3.58637 3.89075 4.10084 4.47049 4.55555 4.63281 4.80184 4.86639 4.91834 4.97179 5.15781 5.25008 5.39217 5.48800 5.52448 5.55070 5.59485 5.70224 5.81127 5.96969 6.04538 6.07842 6.12916 6.13211 6.25650 6.27070 6.33108 6.68093 6.80126 6.99337 7.11864 7.16060 7.17708 7.39339 7.52163 7.85350 7.95265 8.03745 8.19566 8.55118 8.82209 8.89598 10.13773 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008840 B = 0.004229 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.530939 B = 6619.513205 C = 8607.673409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.179 3.821 4 C -0.229 4.229 5 C 0.052 3.948 6 C -0.140 4.140 7 C -0.700 4.700 8 S 2.694 3.306 9 O -0.951 6.951 10 O -0.974 6.974 11 N -1.039 6.039 12 C 0.004 3.996 13 C -0.129 4.129 14 C -0.142 4.142 15 C 0.106 3.894 16 C -0.455 4.455 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.790 5.790 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.211 4.211 25 C -0.089 4.089 26 C 0.025 3.975 27 C -0.138 4.138 28 C -0.105 4.105 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.408 0.592 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.282 0.718 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 -2.970 -9.137 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.133 3.867 4 C -0.248 4.248 5 C 0.050 3.950 6 C -0.197 4.197 7 C -0.787 4.787 8 S 2.785 3.215 9 O -0.941 6.941 10 O -0.964 6.964 11 N -0.791 5.791 12 C -0.090 4.090 13 C -0.150 4.150 14 C -0.162 4.162 15 C 0.103 3.897 16 C -0.484 4.484 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.416 5.416 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.232 4.232 25 C -0.111 4.111 26 C 0.005 3.995 27 C -0.140 4.140 28 C -0.161 4.161 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.169 0.831 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.171 -3.224 -9.936 14.580 hybrid contribution -0.835 -0.561 1.073 1.471 sum -11.006 -3.785 -8.863 14.629 Atomic orbital electron populations 1.23123 0.78211 1.04102 1.01655 1.86093 1.21553 1.26803 1.87691 1.19018 0.91910 0.84054 0.91762 1.21068 0.99982 0.91640 1.12153 1.19189 0.91417 0.95238 0.89116 1.21226 1.00327 0.93992 1.04139 1.30632 1.04200 1.21693 1.22144 1.01925 0.73753 0.73578 0.72211 1.93572 1.29365 1.85281 1.85896 1.93553 1.78493 1.69563 1.54823 1.52516 1.65325 1.40680 1.20612 1.16677 1.11676 0.92718 0.87915 1.20736 1.02530 0.92894 0.98851 1.20974 1.00910 1.00507 0.93822 1.17693 0.88430 0.90816 0.92754 1.19580 1.36694 0.95408 0.96757 0.90285 1.25934 0.92981 0.97323 0.98243 1.69836 1.32350 1.10324 1.29046 0.86269 0.78760 0.79278 0.82179 1.19332 1.20243 1.18588 1.20646 1.09000 0.95961 0.97551 1.20216 0.98920 0.97112 0.94819 1.20710 1.00433 0.89568 0.88740 1.19308 0.90578 0.96423 1.07662 1.20625 0.98705 0.93775 1.03034 0.92251 0.92493 0.88068 0.84806 0.88765 0.90091 0.91132 0.75595 0.88239 0.85701 0.90746 0.88468 0.88807 0.83121 0.90701 0.91351 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.82 9.54 -19.44 -0.19 -4.01 16 3 C 0.18 2.54 6.66 -39.22 -0.26 2.28 16 4 C -0.23 -3.04 8.69 -39.43 -0.34 -3.39 16 5 C 0.05 0.76 5.87 -104.64 -0.61 0.15 16 6 C -0.14 -1.71 8.78 36.01 0.32 -1.40 16 7 C -0.70 -11.79 3.68 -39.56 -0.15 -11.94 16 8 S 2.69 48.87 4.70 -107.50 -0.51 48.36 16 9 O -0.95 -20.52 16.63 -57.17 -0.95 -21.48 16 10 O -0.97 -17.66 16.48 -57.17 -0.94 -18.60 16 11 N -1.04 -18.25 4.63 32.51 0.15 -18.10 16 12 C 0.00 0.10 6.00 -83.69 -0.50 -0.41 16 13 C -0.13 -2.95 9.27 -39.77 -0.37 -3.32 16 14 C -0.14 -3.59 8.63 -39.26 -0.34 -3.93 16 15 C 0.11 2.73 5.58 -106.79 -0.60 2.14 16 16 C -0.45 -11.64 9.05 -37.87 -0.34 -11.99 16 17 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 18 C 0.07 1.78 5.20 -17.34 -0.09 1.69 16 19 N -0.79 -19.90 10.80 55.54 0.60 -19.30 16 20 Si 0.91 18.16 29.58 -169.99 -5.03 13.13 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.21 -4.99 9.74 -39.26 -0.38 -5.37 16 25 C -0.09 -1.93 9.90 -39.77 -0.39 -2.32 16 26 C 0.02 0.42 8.09 -39.61 -0.32 0.10 16 27 C -0.14 -2.12 5.89 -104.47 -0.62 -2.73 16 28 C -0.10 -1.37 9.79 36.01 0.35 -1.02 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.07 0.89 4.92 -51.93 -0.26 0.63 16 36 H 0.41 5.81 8.41 -34.47 -0.29 5.52 16 37 H 0.10 2.09 4.29 -52.48 -0.23 1.86 16 38 H 0.13 3.26 6.08 -52.49 -0.32 2.94 16 39 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 40 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.15 2.53 7.33 -52.49 -0.38 2.15 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 45 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -31.51 377.41 -10.32 -41.83 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.49 Total: 12.73 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: -3.65 Total: -40.26 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.75 Total: -37.39 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -2.08 Total: -44.09 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 48.87 SS G_CDS: -0.51 Total: 48.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.51 -10.32 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121230545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.213 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds