Wall clock time and date at job start Tue Mar 31 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00480 * 2 1 4 4 H 1.48502 * 109.47287 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47483 * 119.99875 * 3 2 1 7 7 C 1.37881 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00132 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00106 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99836 * 90.00023 * 10 9 7 12 12 O 1.21283 * 119.99810 * 185.07892 * 11 10 9 13 13 C 1.50695 * 120.00360 * 5.07359 * 11 10 9 14 14 C 1.53007 * 109.47453 * 185.68118 * 13 11 10 15 15 H 1.09005 * 110.74362 * 302.98507 * 14 13 11 16 16 C 1.54257 * 110.84698 * 66.45396 * 14 13 11 17 17 O 1.45365 * 106.63218 * 133.38555 * 16 14 13 18 18 C 1.34006 * 111.49140 * 2.27027 * 17 16 14 19 19 O 1.20825 * 125.69660 * 160.08168 * 18 17 16 20 20 C 1.51661 * 108.60391 * 340.34689 * 18 17 16 21 21 C 1.46495 * 119.99653 * 269.99882 * 10 9 7 22 22 C 1.53004 * 109.47014 * 117.47016 * 21 10 9 23 23 C 1.52997 * 109.47131 * 179.97438 * 22 21 10 24 24 C 1.53007 * 109.47303 * 59.99683 * 23 22 21 25 25 C 1.52995 * 109.46896 * 300.00131 * 24 23 22 26 26 C 1.53002 * 109.47356 * 299.99800 * 25 24 23 27 27 C 1.53007 * 109.46955 * 60.00236 * 26 25 24 28 28 C 1.53000 * 109.47166 * 299.99539 * 23 22 21 29 29 C 1.52997 * 109.47303 * 60.00177 * 27 26 25 30 30 C 1.52998 * 109.47473 * 357.46489 * 21 10 9 31 31 H 0.97002 * 119.99172 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.47021 * 59.99803 * 9 7 2 33 33 H 1.09006 * 109.46955 * 299.99848 * 9 7 2 34 34 H 1.08996 * 109.47163 * 65.67676 * 13 11 10 35 35 H 1.09003 * 109.47617 * 305.68140 * 13 11 10 36 36 H 1.09007 * 110.02972 * 14.09021 * 16 14 13 37 37 H 1.09007 * 110.02801 * 252.68401 * 16 14 13 38 38 H 1.08999 * 110.70663 * 146.91250 * 20 18 17 39 39 H 1.09007 * 110.70577 * 270.14578 * 20 18 17 40 40 H 1.09000 * 109.46964 * 299.99594 * 22 21 10 41 41 H 1.08994 * 109.47633 * 59.99104 * 22 21 10 42 42 H 1.08998 * 109.47434 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47289 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47025 * 60.00070 * 24 23 22 45 45 H 1.08994 * 109.47243 * 180.02562 * 25 24 23 46 46 H 1.09003 * 109.47032 * 300.00542 * 26 25 24 47 47 H 1.09000 * 109.47810 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.47268 * 180.02562 * 27 26 25 49 49 H 1.09002 * 109.47263 * 300.00062 * 28 23 22 50 50 H 1.08999 * 109.47410 * 179.97438 * 28 23 22 51 51 H 1.08993 * 109.47014 * 180.02562 * 29 27 26 52 52 H 1.08998 * 109.47209 * 59.99731 * 29 27 26 53 53 H 1.08998 * 109.46830 * 300.00275 * 30 21 10 54 54 H 1.09000 * 109.46927 * 60.00148 * 30 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0018 11 6 2.6398 -4.1245 1.1696 12 8 3.4962 -4.9832 1.1727 13 6 2.0644 -3.6296 2.4714 14 6 2.8245 -4.2628 3.6386 15 1 2.7871 -5.3506 3.5789 16 6 4.2840 -3.7650 3.6778 17 8 4.5635 -3.4039 5.0579 18 6 3.5147 -3.6552 5.8532 19 8 3.5547 -3.7810 7.0542 20 6 2.2700 -3.7619 4.9932 21 6 2.6797 -4.1701 -1.2663 22 6 4.1928 -3.9703 -1.3743 23 6 4.6910 -4.5529 -2.6984 24 6 3.9982 -3.8406 -3.8618 25 6 2.4852 -4.0404 -3.7538 26 6 2.1630 -5.5352 -3.8066 27 6 2.8559 -6.2475 -2.6431 28 6 4.3690 -6.0477 -2.7512 29 6 2.3577 -5.6649 -1.3190 30 6 1.9869 -3.4573 -2.4294 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6239 -2.5567 0.8904 34 1 1.0115 -3.9050 2.5313 35 1 2.1595 -2.5449 2.5218 36 1 4.3986 -2.8934 3.0334 37 1 4.9580 -4.5589 3.3558 38 1 1.5712 -4.4845 5.4146 39 1 1.7958 -2.7871 4.8789 40 1 4.4223 -2.9055 -1.3363 41 1 4.6864 -4.4781 -0.5457 42 1 5.7688 -4.4102 -2.7755 43 1 4.3527 -4.2559 -4.8052 44 1 4.2276 -2.7756 -3.8243 45 1 1.9916 -3.5333 -4.5829 46 1 2.5180 -5.9503 -4.7499 47 1 1.0851 -5.6776 -3.7301 48 1 2.6268 -7.3125 -2.6809 49 1 4.8625 -6.5552 -1.9223 50 1 4.7234 -6.4627 -3.6947 51 1 2.8516 -6.1721 -0.4903 52 1 1.2798 -5.8073 -1.2421 53 1 0.9090 -3.5997 -2.3524 54 1 2.2164 -2.3924 -2.3914 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133735456.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:29 Heat of formation + Delta-G solvation = -155.064194 kcal Electronic energy + Delta-G solvation = -35687.067165 eV Core-core repulsion = 31393.665927 eV Total energy + Delta-G solvation = -4293.401238 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.64247 -42.02371 -40.15065 -38.61145 -36.77916 -35.30219 -34.53730 -33.45907 -33.44706 -32.20408 -29.76952 -29.05941 -28.01549 -26.81579 -26.73264 -24.69883 -23.34853 -22.41130 -22.29222 -22.15280 -21.50332 -19.59581 -18.63032 -18.45929 -18.32345 -17.81855 -17.47793 -17.15913 -16.89783 -16.28027 -16.15776 -15.43965 -15.38721 -15.31981 -15.18163 -14.78801 -14.60872 -14.56110 -14.23763 -14.18712 -13.99863 -13.94433 -13.81869 -13.37006 -13.30062 -13.26735 -13.13918 -12.90098 -12.81973 -12.61211 -12.41102 -12.17070 -12.11763 -12.02702 -11.78465 -11.71495 -11.59734 -11.54948 -11.53997 -11.45798 -11.29710 -11.11125 -10.61054 -10.60928 -10.50569 -10.04979 -9.24050 -8.16288 -6.28125 0.93584 1.39652 1.43243 1.47891 1.87325 2.20382 2.31090 2.45024 2.95312 3.13999 3.24894 3.55288 3.65826 3.68249 3.77906 3.86640 4.05448 4.23022 4.26142 4.36091 4.37988 4.39049 4.39952 4.40611 4.43004 4.49850 4.53911 4.56331 4.66691 4.70086 4.75945 4.84848 4.85910 4.89765 4.93851 4.94319 5.12118 5.14997 5.18165 5.20124 5.21084 5.25653 5.26882 5.30597 5.38856 5.40821 5.50484 5.60451 5.65978 5.71953 5.74703 5.75048 6.05151 6.13739 6.33094 6.69066 6.93648 7.38819 7.52095 8.87793 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.004394 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.539617 B = 6370.801492 C = 8743.297168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.047 0.953 9 C 0.247 3.753 10 N -0.594 5.594 11 C 0.511 3.489 12 O -0.576 6.576 13 C -0.125 4.125 14 C -0.090 4.090 15 H 0.113 0.887 16 C 0.067 3.933 17 O -0.370 6.370 18 C 0.487 3.513 19 O -0.500 6.500 20 C -0.171 4.171 21 C 0.188 3.812 22 C -0.112 4.112 23 C -0.081 4.081 24 C -0.105 4.105 25 C -0.083 4.083 26 C -0.103 4.103 27 C -0.079 4.079 28 C -0.100 4.100 29 C -0.114 4.114 30 C -0.103 4.103 31 H 0.265 0.735 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.033 0.967 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.067 0.933 52 H 0.048 0.952 53 H 0.051 0.949 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -11.296 -5.759 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.171 4.171 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.065 0.935 9 C 0.126 3.874 10 N -0.323 5.323 11 C 0.301 3.699 12 O -0.458 6.458 13 C -0.164 4.164 14 C -0.109 4.109 15 H 0.131 0.869 16 C -0.006 4.006 17 O -0.286 6.286 18 C 0.330 3.670 19 O -0.387 6.387 20 C -0.209 4.209 21 C 0.104 3.896 22 C -0.151 4.151 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.102 4.102 26 C -0.140 4.140 27 C -0.097 4.097 28 C -0.137 4.137 29 C -0.152 4.152 30 C -0.141 4.141 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.102 0.898 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.086 0.914 52 H 0.067 0.933 53 H 0.070 0.930 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.634 -11.561 -5.173 13.176 hybrid contribution 0.072 1.759 0.180 1.770 sum 3.706 -9.802 -4.993 11.608 Atomic orbital electron populations 1.69975 1.06850 1.27846 1.50864 1.25432 0.95317 1.01416 0.94903 0.85918 0.78656 0.80301 0.78666 1.20259 1.21028 1.19925 1.21542 0.92882 0.91492 1.50906 0.93451 1.19138 0.87769 0.82688 0.97768 1.48389 1.44748 1.33875 1.05261 1.20692 0.81867 0.81330 0.86030 1.90535 1.33086 1.34237 1.87946 1.21674 1.01786 1.02576 0.90395 1.22142 0.93014 1.02716 0.93014 0.86883 1.24118 0.97929 1.02020 0.76567 1.86728 1.42751 1.76617 1.22529 1.23667 0.86287 0.70111 0.86946 1.90669 1.86791 1.46939 1.14343 1.23165 0.96667 1.07261 0.93758 1.20172 0.93545 0.92960 0.82889 1.21798 0.95331 0.99285 0.98649 1.21049 0.99452 0.95850 0.93628 1.21547 0.94489 0.99718 0.98511 1.21096 0.96291 0.96775 0.95997 1.21555 1.00075 0.93809 0.98601 1.21042 0.95532 0.99644 0.93522 1.21495 0.95258 0.94798 1.02182 1.21832 0.99915 0.94446 0.99031 1.21696 0.98766 0.99401 0.94265 0.92546 0.95486 0.95081 0.86909 0.88560 0.89304 0.87632 0.84533 0.85105 0.94770 0.91659 0.90799 0.89755 0.93332 0.90537 0.89787 0.92138 0.89835 0.92601 0.89917 0.91417 0.93316 0.93031 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.62 13.29 21.45 0.28 -47.34 16 2 C 0.03 1.48 5.46 84.66 0.46 1.94 16 3 Si 0.94 40.40 29.54 68.60 2.03 42.42 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.53 -25.29 8.59 25.60 0.22 -25.07 16 8 H 0.05 2.35 7.81 -2.91 -0.02 2.32 16 9 C 0.25 10.58 4.25 85.63 0.36 10.95 16 10 N -0.59 -21.86 2.41 -779.08 -1.87 -23.73 16 11 C 0.51 17.38 6.79 87.66 0.59 17.97 16 12 O -0.58 -20.15 11.49 -3.04 -0.03 -20.18 16 13 C -0.12 -3.52 3.41 29.85 0.10 -3.42 16 14 C -0.09 -2.13 2.70 -9.78 -0.03 -2.15 16 15 H 0.11 2.51 7.98 -2.38 -0.02 2.49 16 16 C 0.07 1.80 6.59 72.41 0.48 2.27 16 17 O -0.37 -11.20 10.95 -49.65 -0.54 -11.74 16 18 C 0.49 14.15 8.62 71.54 0.62 14.77 16 19 O -0.50 -17.61 18.00 21.61 0.39 -17.22 16 20 C -0.17 -3.63 6.51 30.74 0.20 -3.43 16 21 C 0.19 6.25 0.78 3.61 0.00 6.25 16 22 C -0.11 -3.68 4.44 30.59 0.14 -3.54 16 23 C -0.08 -2.04 3.19 -10.79 -0.03 -2.07 16 24 C -0.11 -2.50 5.19 30.59 0.16 -2.34 16 25 C -0.08 -2.09 3.19 -10.78 -0.03 -2.13 16 26 C -0.10 -2.17 5.19 30.60 0.16 -2.01 16 27 C -0.08 -1.77 3.19 -10.79 -0.03 -1.81 16 28 C -0.10 -2.16 5.19 30.60 0.16 -2.00 16 29 C -0.11 -3.33 4.36 30.60 0.13 -3.19 16 30 C -0.10 -3.45 3.20 30.61 0.10 -3.35 16 31 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 32 H 0.03 1.26 5.73 -2.39 -0.01 1.24 16 33 H 0.03 1.36 6.55 -2.38 -0.02 1.34 16 34 H 0.11 2.86 7.85 -2.39 -0.02 2.84 16 35 H 0.10 3.05 7.64 -2.39 -0.02 3.04 16 36 H 0.09 2.55 7.72 -2.38 -0.02 2.53 16 37 H 0.11 2.74 8.07 -2.38 -0.02 2.72 16 38 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.13 2.59 7.91 -2.38 -0.02 2.57 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 2.32 6.19 -2.39 -0.01 2.30 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.07 2.18 6.16 -2.39 -0.01 2.17 16 52 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.05 1.81 6.99 -2.39 -0.02 1.80 16 54 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 Total: -1.00 -58.51 397.59 4.89 -53.62 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.89 Total: 26.54 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 3.75 Total: -2.37 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.59 Total: -71.07 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.19 Total: -49.15 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -58.51 4.89 -53.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133735456.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.442 kcal (2) G-P(sol) polarization free energy of solvation -58.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds