Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48495 * 109.47089 * 269.99629 * 3 2 1 5 5 H 1.48502 * 109.46970 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.47048 * 149.99666 * 3 2 1 7 7 C 1.37870 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00340 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00273 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99947 * 89.99707 * 10 9 7 12 12 O 1.21281 * 120.00217 * 356.19642 * 11 10 9 13 13 C 1.50706 * 119.99733 * 176.46613 * 11 10 9 14 14 C 1.53003 * 109.47058 * 201.72273 * 13 11 10 15 15 H 1.09007 * 110.62210 * 51.91106 * 14 13 11 16 16 C 1.54370 * 110.70162 * 288.63151 * 14 13 11 17 17 O 1.45947 * 105.06420 * 223.79049 * 16 14 13 18 18 C 1.34566 * 108.40618 * 32.43932 * 17 16 14 19 19 O 1.20827 * 125.94643 * 146.68250 * 18 17 16 20 20 C 1.51501 * 108.10893 * 326.66513 * 18 17 16 21 21 C 1.46500 * 120.00134 * 270.00166 * 10 9 7 22 22 C 1.53000 * 109.46872 * 13.49538 * 21 10 9 23 23 C 1.53004 * 109.47179 * 180.02562 * 22 21 10 24 24 C 1.52997 * 109.46794 * 300.00060 * 23 22 21 25 25 C 1.53001 * 109.47586 * 59.99756 * 24 23 22 26 26 C 1.53001 * 109.46637 * 59.99812 * 25 24 23 27 27 C 1.52992 * 109.47531 * 300.00121 * 26 25 24 28 28 C 1.52997 * 109.47115 * 59.99556 * 23 22 21 29 29 C 1.53001 * 109.46993 * 253.49931 * 21 10 9 30 30 C 1.52997 * 109.47283 * 133.49710 * 21 10 9 31 31 H 0.97002 * 119.99912 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46776 * 59.99897 * 9 7 2 33 33 H 1.08999 * 109.46827 * 300.00063 * 9 7 2 34 34 H 1.08997 * 109.47285 * 321.72549 * 13 11 10 35 35 H 1.08998 * 109.46850 * 81.72712 * 13 11 10 36 36 H 1.08996 * 110.32334 * 342.68571 * 16 14 13 37 37 H 1.08996 * 110.32016 * 104.89583 * 16 14 13 38 38 H 1.09008 * 110.40502 * 261.59239 * 20 18 17 39 39 H 1.09000 * 110.50707 * 139.21534 * 20 18 17 40 40 H 1.09003 * 109.47261 * 300.00219 * 22 21 10 41 41 H 1.08996 * 109.47517 * 60.00553 * 22 21 10 42 42 H 1.08998 * 109.47400 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47403 * 299.99507 * 24 23 22 44 44 H 1.09004 * 109.47409 * 180.02562 * 24 23 22 45 45 H 1.08996 * 109.47626 * 179.97438 * 25 24 23 46 46 H 1.09007 * 109.47064 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.47379 * 60.00733 * 26 25 24 48 48 H 1.09002 * 109.47640 * 179.97438 * 27 26 25 49 49 H 1.09006 * 109.47040 * 180.02562 * 28 23 22 50 50 H 1.09003 * 109.46851 * 60.00483 * 28 23 22 51 51 H 1.08998 * 109.46978 * 299.99798 * 29 21 10 52 52 H 1.09003 * 109.47258 * 59.99709 * 29 21 10 53 53 H 1.08996 * 109.47155 * 299.99476 * 30 21 10 54 54 H 1.08995 * 109.47444 * 60.00344 * 30 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 4.2249 -3.2104 -1.1662 12 8 3.9581 -2.6636 -2.2154 13 6 4.8023 -4.6024 -1.1675 14 6 5.4526 -4.8836 -2.5237 15 1 6.1517 -4.0895 -2.7863 16 6 4.3783 -5.0542 -3.6190 17 8 4.8103 -6.2110 -4.3970 18 6 5.4414 -7.0663 -3.5719 19 8 5.4344 -8.2715 -3.6591 20 6 6.1626 -6.2553 -2.5148 21 6 4.2435 -3.2662 1.2696 22 6 3.6058 -2.4738 2.4126 23 6 3.8607 -3.1950 3.7376 24 6 3.2462 -4.5951 3.6826 25 6 3.8839 -5.3875 2.5397 26 6 5.3911 -5.5010 2.7768 27 6 6.0057 -4.1011 2.8317 28 6 5.3679 -3.3087 3.9747 29 6 5.7507 -3.3802 1.5070 30 6 3.6286 -4.6661 1.2143 31 1 -0.4850 0.8401 -0.0004 32 1 3.8745 -0.6800 0.8911 33 1 3.8752 -0.6804 -0.8888 34 1 5.5522 -4.6854 -0.3808 35 1 4.0068 -5.3259 -0.9891 36 1 3.4044 -5.2438 -3.1679 37 1 4.3376 -4.1669 -4.2508 38 1 7.2147 -6.1404 -2.7761 39 1 6.0640 -6.7280 -1.5376 40 1 4.0438 -1.4765 2.4520 41 1 2.5320 -2.3926 2.2436 42 1 3.4060 -2.6308 4.5518 43 1 2.1723 -4.5142 3.5138 44 1 3.4274 -5.1088 4.6268 45 1 3.4464 -6.3851 2.5008 46 1 5.8456 -6.0652 1.9623 47 1 5.5728 -6.0150 3.7208 48 1 7.0794 -4.1819 3.0011 49 1 5.5496 -3.8229 4.9185 50 1 5.8058 -2.3112 4.0138 51 1 6.2050 -3.9447 0.6928 52 1 6.1888 -2.3829 1.5464 53 1 2.5549 -4.5849 1.0453 54 1 4.0830 -5.2306 0.4001 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133735651.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -128.650821 kcal Electronic energy + Delta-G solvation = -36050.568939 eV Core-core repulsion = 31758.313071 eV Total energy + Delta-G solvation = -4292.255868 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.90184 -41.94232 -40.22061 -38.59233 -36.79278 -35.57963 -34.68749 -33.58034 -33.44574 -31.91109 -30.46721 -29.36250 -28.19654 -26.81192 -26.54428 -24.42473 -23.12286 -22.38366 -22.27677 -22.17307 -21.81724 -19.95392 -19.08617 -18.45461 -18.20233 -17.71241 -17.45171 -17.34559 -17.02702 -16.48059 -15.87068 -15.58414 -15.40114 -15.33840 -15.14990 -15.01173 -14.61978 -14.58399 -14.44579 -14.28166 -14.10280 -13.98094 -13.85887 -13.54475 -13.34813 -13.27777 -13.19439 -12.94077 -12.81519 -12.49930 -12.37617 -12.20958 -12.18454 -11.89038 -11.73558 -11.67592 -11.64514 -11.57535 -11.50512 -11.29760 -11.22201 -10.86820 -10.79162 -10.57868 -10.55401 -10.31599 -9.27555 -8.32006 -6.33920 0.85172 1.29393 1.32780 1.40288 1.80200 2.24162 2.29628 2.39795 3.01837 3.02369 3.23339 3.49906 3.61001 3.62621 3.69883 3.84826 3.99300 4.12183 4.17483 4.23137 4.31679 4.34309 4.36295 4.37614 4.41997 4.46261 4.52153 4.54253 4.60250 4.70358 4.74307 4.79787 4.84414 4.88862 4.93631 4.97266 4.99470 5.05305 5.09413 5.17311 5.24741 5.25673 5.26971 5.29964 5.37365 5.41463 5.48738 5.54149 5.62138 5.64227 5.68644 5.76415 5.78924 6.26593 6.34615 6.66008 6.79640 7.25006 7.46472 8.84995 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.004713 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.586288 B = 5939.581537 C = 8464.431690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.240 1.240 7 C -0.512 4.512 8 H 0.025 0.975 9 C 0.226 3.774 10 N -0.591 5.591 11 C 0.499 3.501 12 O -0.585 6.585 13 C -0.141 4.141 14 C -0.099 4.099 15 H 0.113 0.887 16 C 0.065 3.935 17 O -0.377 6.377 18 C 0.480 3.520 19 O -0.495 6.495 20 C -0.162 4.162 21 C 0.176 3.824 22 C -0.108 4.108 23 C -0.083 4.083 24 C -0.110 4.110 25 C -0.078 4.078 26 C -0.104 4.104 27 C -0.077 4.077 28 C -0.106 4.106 29 C -0.123 4.123 30 C -0.153 4.153 31 H 0.265 0.735 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.050 0.950 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.091 0.909 52 H 0.058 0.942 53 H 0.030 0.970 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.936 -12.172 9.053 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.164 1.164 7 C -0.550 4.550 8 H 0.044 0.956 9 C 0.103 3.897 10 N -0.320 5.320 11 C 0.288 3.712 12 O -0.466 6.466 13 C -0.179 4.179 14 C -0.118 4.118 15 H 0.131 0.869 16 C -0.008 4.008 17 O -0.296 6.296 18 C 0.323 3.677 19 O -0.380 6.380 20 C -0.200 4.200 21 C 0.092 3.908 22 C -0.146 4.146 23 C -0.102 4.102 24 C -0.147 4.147 25 C -0.096 4.096 26 C -0.141 4.141 27 C -0.095 4.095 28 C -0.143 4.143 29 C -0.161 4.161 30 C -0.190 4.190 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.160 0.840 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.117 0.883 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.109 0.891 52 H 0.077 0.923 53 H 0.049 0.951 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.586 -12.328 8.266 23.786 hybrid contribution -1.441 1.710 -0.439 2.279 sum 17.146 -10.618 7.827 21.633 Atomic orbital electron populations 1.70056 1.08132 1.27934 1.52714 1.25753 0.95495 1.02913 0.94437 0.85855 0.79907 0.79154 0.78922 1.20147 1.20500 1.16350 1.21410 0.91389 0.92632 1.49607 0.95619 1.19265 0.92713 0.81117 0.96584 1.48205 1.63412 1.14137 1.06243 1.21136 0.78135 0.88938 0.83019 1.90650 1.54133 1.69331 1.32520 1.22685 1.03021 0.92872 0.99326 1.22192 0.97213 0.98692 0.93674 0.86920 1.24222 0.97740 0.85400 0.93470 1.87271 1.71454 1.32750 1.38083 1.24004 0.76302 0.86320 0.81070 1.90672 1.61416 1.13900 1.72028 1.23026 1.02908 0.93165 1.00876 1.20461 0.96093 0.92093 0.82160 1.21705 1.00000 0.98087 0.94812 1.21072 0.97631 0.96209 0.95273 1.21570 0.98433 0.95184 0.99535 1.21059 0.97650 0.98459 0.92474 1.21599 0.92914 0.96024 1.03540 1.21071 1.00876 0.94909 0.92687 1.21569 0.93067 1.00468 0.99189 1.22175 0.92937 1.01528 0.99498 1.22751 0.99859 0.95264 1.01121 0.92592 0.93865 0.96580 0.84016 0.86563 0.90698 0.87183 0.83298 0.84041 0.93085 0.94233 0.91808 0.94532 0.89832 0.89754 0.89666 0.89914 0.88257 0.89879 0.92428 0.89132 0.92347 0.95122 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.01 0.67 5.47 84.65 0.46 1.13 16 3 Si 0.94 44.14 27.47 68.60 1.88 46.02 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 7 C -0.51 -29.17 8.74 25.60 0.22 -28.94 16 8 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 9 C 0.23 10.50 3.57 85.63 0.31 10.80 16 10 N -0.59 -21.74 2.40 -779.08 -1.87 -23.61 16 11 C 0.50 17.17 7.09 87.66 0.62 17.80 16 12 O -0.59 -25.40 14.60 -3.03 -0.04 -25.44 16 13 C -0.14 -2.86 2.60 29.85 0.08 -2.79 16 14 C -0.10 -1.79 2.87 -9.83 -0.03 -1.82 16 15 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 16 C 0.07 1.62 6.23 72.45 0.45 2.07 16 17 O -0.38 -10.12 11.17 -55.12 -0.62 -10.73 16 18 C 0.48 11.30 8.50 71.49 0.61 11.91 16 19 O -0.49 -14.92 18.00 21.55 0.39 -14.53 16 20 C -0.16 -2.07 6.61 30.60 0.20 -1.87 16 21 C 0.18 4.87 0.74 3.60 0.00 4.87 16 22 C -0.11 -3.47 3.46 30.60 0.11 -3.37 16 23 C -0.08 -1.92 3.20 -10.79 -0.03 -1.95 16 24 C -0.11 -2.27 5.19 30.59 0.16 -2.11 16 25 C -0.08 -1.35 3.20 -10.78 -0.03 -1.38 16 26 C -0.10 -1.14 5.19 30.59 0.16 -0.99 16 27 C -0.08 -1.02 3.19 -10.81 -0.03 -1.05 16 28 C -0.11 -1.72 5.19 30.59 0.16 -1.56 16 29 C -0.12 -2.33 4.50 30.58 0.14 -2.19 16 30 C -0.15 -3.67 3.94 30.61 0.12 -3.55 16 31 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.04 1.92 5.09 -2.39 -0.01 1.91 16 33 H 0.02 0.81 6.90 -2.39 -0.02 0.79 16 34 H 0.14 1.91 3.93 -2.39 -0.01 1.90 16 35 H 0.12 2.24 6.07 -2.39 -0.01 2.22 16 36 H 0.07 2.00 7.69 -2.39 -0.02 1.98 16 37 H 0.11 3.00 7.89 -2.39 -0.02 2.98 16 38 H 0.15 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.14 1.06 7.74 -2.39 -0.02 1.04 16 40 H 0.05 1.75 6.47 -2.39 -0.02 1.73 16 41 H 0.04 1.66 7.06 -2.39 -0.02 1.64 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.09 1.28 5.10 -2.39 -0.01 1.27 16 52 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.11 2.08 3.08 -2.39 -0.01 2.07 16 Total: -1.00 -80.76 387.07 4.56 -76.19 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.86 Total: 16.53 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 3.66 Total: -5.01 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.57 Total: -83.03 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.27 Total: -50.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -80.76 4.56 -76.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133735651.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.456 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds