Wall clock time and date at job start Tue Mar 31 2020 05:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35334 * 126.42672 * 2 1 4 4 C 1.41582 * 105.55715 * 179.97438 * 3 2 1 5 5 C 1.47558 * 126.45018 * 180.26306 * 4 3 2 6 6 O 1.21609 * 119.99770 * 356.13632 * 5 4 3 7 7 N 1.34774 * 120.00114 * 176.14137 * 5 4 3 8 8 C 1.36895 * 120.00482 * 185.15335 * 7 5 4 9 9 H 1.07999 * 120.00505 * 172.77875 * 8 7 5 10 10 C 1.39030 * 119.99711 * 352.77095 * 8 7 5 11 11 N 1.31380 * 119.99965 * 90.71669 * 10 8 7 12 12 Si 1.86803 * 120.00177 * 270.72283 * 10 8 7 13 13 H 1.48499 * 109.46887 * 5.01085 * 12 10 8 14 14 H 1.48502 * 109.47019 * 125.00779 * 12 10 8 15 15 H 1.48489 * 109.47141 * 245.01133 * 12 10 8 16 16 C 1.46507 * 119.99770 * 5.14954 * 7 5 4 17 17 C 1.50693 * 109.47231 * 92.82560 * 16 7 5 18 18 C 1.38234 * 119.99858 * 275.44009 * 17 16 7 19 19 C 1.38244 * 119.99847 * 179.76369 * 18 17 16 20 20 C 1.38232 * 119.99767 * 0.51168 * 19 18 17 21 21 C 1.38234 * 120.00414 * 359.73900 * 20 19 18 22 22 C 1.38234 * 120.00170 * 95.71199 * 17 16 7 23 23 N 1.31907 * 107.10236 * 0.02562 * 4 3 2 24 24 N 1.28475 * 110.10994 * 359.97438 * 23 4 3 25 25 C 1.40097 * 124.95589 * 180.02562 * 24 23 4 26 26 C 1.38866 * 120.07046 * 137.26380 * 25 24 23 27 27 C 1.38115 * 119.92757 * 179.76457 * 26 25 24 28 28 C 1.38285 * 120.07113 * 0.51533 * 27 26 25 29 29 C 1.38285 * 120.13812 * 359.73955 * 28 27 26 30 30 C 1.38113 * 120.06848 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47000 * 270.02023 * 1 2 3 32 32 H 1.09000 * 109.47429 * 30.02354 * 1 2 3 33 33 H 1.09005 * 109.47066 * 150.02183 * 1 2 3 34 34 H 1.07997 * 127.22187 * 0.02562 * 3 2 1 35 35 H 0.96994 * 120.00211 * 184.91952 * 11 10 8 36 36 H 1.09004 * 109.46937 * 212.82291 * 16 7 5 37 37 H 1.08996 * 109.46952 * 332.82140 * 16 7 5 38 38 H 1.08002 * 120.00362 * 0.02562 * 18 17 16 39 39 H 1.08000 * 119.99994 * 180.22928 * 19 18 17 40 40 H 1.08002 * 119.99699 * 179.71970 * 20 19 18 41 41 H 1.07998 * 119.99998 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00547 * 0.02562 * 22 17 16 43 43 H 1.07991 * 120.03328 * 0.02562 * 26 25 24 44 44 H 1.08002 * 119.96140 * 180.26902 * 27 26 25 45 45 H 1.08000 * 119.93278 * 179.76246 * 28 27 26 46 46 H 1.07998 * 119.96355 * 180.02562 * 29 28 27 47 47 H 1.08000 * 120.03091 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0889 0.0000 4 6 3.6335 0.5845 0.0006 5 6 4.8755 1.3813 0.0063 6 8 4.8200 2.5943 -0.0599 7 7 6.0713 0.7647 0.0847 8 6 7.2173 1.5051 0.1964 9 1 8.1622 1.0140 0.3763 10 6 7.1648 2.8894 0.0781 11 7 6.9869 3.6336 1.1461 12 14 7.3470 3.6911 -1.5993 13 1 7.4136 2.6396 -2.6458 14 1 6.1794 4.5720 -1.8563 15 1 8.5926 4.4987 -1.6291 16 6 6.1448 -0.6982 0.0506 17 6 6.3524 -1.1577 -1.3695 18 6 5.2668 -1.3162 -2.2103 19 6 5.4577 -1.7330 -3.5145 20 6 6.7332 -2.0015 -3.9746 21 6 7.8185 -1.8480 -3.1322 22 6 7.6280 -1.4261 -1.8296 23 7 3.5468 -0.7317 0.0004 24 7 2.3140 -1.0932 0.0002 25 6 1.8668 -2.4209 0.0004 26 6 0.8081 -2.7984 0.8159 27 6 0.3665 -4.1070 0.8102 28 6 0.9844 -5.0433 0.0015 29 6 2.0424 -4.6717 -0.8077 30 6 2.4848 -3.3633 -0.8109 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 2.0065 2.1252 0.0004 35 1 6.8788 4.5933 1.0559 36 1 6.9786 -1.0345 0.6669 37 1 5.2156 -1.1177 0.4361 38 1 4.2698 -1.1103 -1.8497 39 1 4.6098 -1.8533 -4.1726 40 1 6.8820 -2.3316 -4.9921 41 1 8.8150 -2.0582 -3.4916 42 1 8.4758 -1.3070 -1.1713 43 1 0.3278 -2.0685 1.4506 44 1 -0.4597 -4.4002 1.4409 45 1 0.6397 -6.0668 0.0017 46 1 2.5226 -5.4051 -1.4384 47 1 3.3109 -3.0737 -1.4434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170592254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:12 Heat of formation + Delta-G solvation = 153.136732 kcal Electronic energy + Delta-G solvation = -32810.182921 eV Core-core repulsion = 28733.914854 eV Total energy + Delta-G solvation = -4076.268067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.40047 -39.21844 -38.85188 -37.64697 -34.23621 -33.49779 -32.67128 -32.49115 -31.04277 -30.50702 -30.38274 -29.09005 -26.95197 -25.90082 -24.99118 -23.12705 -23.03272 -22.02936 -21.50859 -20.79025 -20.12893 -19.14096 -17.62520 -16.82367 -16.57612 -16.28852 -15.90739 -15.40736 -14.87015 -14.74257 -14.60480 -14.49354 -14.40684 -13.75495 -13.70884 -13.55504 -13.29287 -13.05635 -12.95048 -12.85744 -12.69399 -12.52881 -12.28142 -12.16210 -11.90834 -11.82320 -11.69479 -11.44543 -11.32533 -10.93406 -10.66911 -10.60154 -10.47901 -9.95432 -9.66724 -9.42878 -9.21403 -8.84925 -8.47308 -8.39625 -8.25930 -8.14568 -8.09619 -7.54384 -6.84097 -3.29652 0.84435 1.12474 1.86691 1.92636 2.30037 2.76989 2.79523 3.36395 3.52763 3.62434 3.69214 4.16461 4.38100 4.57929 4.62024 4.68218 4.77983 4.89364 4.92691 5.06585 5.09925 5.14500 5.27104 5.36712 5.37601 5.45957 5.47806 5.49835 5.53227 5.73110 5.78093 5.83835 5.97407 6.03294 6.06787 6.12012 6.16410 6.22000 6.25900 6.27338 6.41926 6.49056 6.55121 6.60627 6.69651 6.96159 6.97307 7.08076 7.28156 7.35836 7.44485 7.54787 8.01084 8.52817 8.75341 9.26553 9.53135 10.11233 10.36608 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.004312 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.145219 B = 6492.194283 C = 8327.910752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.006 3.994 3 C -0.185 4.185 4 C 0.057 3.943 5 C 0.440 3.560 6 O -0.579 6.579 7 N -0.368 5.368 8 C -0.483 4.483 9 H 0.105 0.895 10 C 0.232 3.768 11 N -0.685 5.685 12 Si 0.811 3.189 13 H -0.265 1.265 14 H -0.272 1.272 15 H -0.291 1.291 16 C 0.119 3.881 17 C -0.069 4.069 18 C -0.108 4.108 19 C -0.134 4.134 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.099 4.099 23 N -0.298 5.298 24 N -0.265 5.265 25 C 0.150 3.850 26 C -0.124 4.124 27 C -0.105 4.105 28 C -0.124 4.124 29 C -0.103 4.103 30 C -0.108 4.108 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.280 0.720 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.553 -15.917 -2.860 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.213 4.213 4 C -0.103 4.103 5 C 0.235 3.765 6 O -0.467 6.467 7 N -0.081 5.081 8 C -0.600 4.600 9 H 0.122 0.878 10 C -0.004 4.004 11 N -0.304 5.304 12 Si 0.630 3.370 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.218 1.218 16 C -0.006 4.006 17 C -0.071 4.071 18 C -0.126 4.126 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.118 4.118 23 N -0.128 5.128 24 N -0.046 5.046 25 C 0.059 3.941 26 C -0.144 4.144 27 C -0.123 4.123 28 C -0.142 4.142 29 C -0.122 4.122 30 C -0.127 4.127 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.174 0.826 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.962 -16.256 -2.619 19.781 hybrid contribution -0.322 1.239 -1.012 1.632 sum -11.284 -15.017 -3.632 19.131 Atomic orbital electron populations 1.20359 0.87499 1.03407 1.02622 1.21437 0.94739 0.86557 1.08724 1.21477 0.91296 0.98881 1.09647 1.22745 0.96359 0.88535 1.02631 1.16178 0.80516 0.86513 0.93285 1.90527 1.83129 1.12432 1.60611 1.43416 1.05170 1.03470 1.56063 1.18260 0.86937 0.88536 1.66267 0.87795 1.24777 0.84301 0.95630 0.95684 1.70723 1.17493 1.08250 1.33923 0.87973 0.76986 0.79764 0.92239 1.18922 1.19763 1.21822 1.21080 1.04485 0.82900 0.92167 1.20309 0.92898 0.96577 0.97280 1.21472 0.99840 0.98055 0.93252 1.21058 0.96758 1.01428 0.95939 1.20975 0.93044 1.01845 0.99059 1.21028 0.98273 1.01136 0.94241 1.21102 0.96845 0.98125 0.95718 1.73687 0.99000 1.15212 1.24948 1.42802 1.03776 1.03607 1.54423 1.17528 0.96858 0.81527 0.98207 1.21105 0.97589 0.97261 0.98467 1.20983 1.00003 0.92153 0.99182 1.21235 0.96431 0.99723 0.96833 1.21076 0.96690 0.95352 0.99037 1.21214 1.00469 0.92849 0.98197 0.90826 0.89955 0.91450 0.82596 0.90817 0.91206 0.86282 0.85347 0.87169 0.87052 0.86763 0.86193 0.85158 0.85231 0.85589 0.85178 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 8.79 36.00 0.32 -0.57 16 2 C 0.01 0.10 6.74 -81.84 -0.55 -0.45 16 3 C -0.19 -3.67 10.72 -39.34 -0.42 -4.09 16 4 C 0.06 1.30 6.50 -82.76 -0.54 0.77 16 5 C 0.44 11.94 7.60 -12.46 -0.09 11.84 16 6 O -0.58 -17.45 13.04 5.27 0.07 -17.38 16 7 N -0.37 -9.59 2.61 -117.27 -0.31 -9.90 16 8 C -0.48 -13.43 9.49 -15.00 -0.14 -13.58 16 9 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 10 C 0.23 6.54 2.99 -17.45 -0.05 6.48 16 11 N -0.68 -19.34 13.42 55.50 0.74 -18.59 16 12 Si 0.81 21.50 28.47 -169.99 -4.84 16.66 16 13 H -0.26 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.27 -7.55 7.11 56.52 0.40 -7.15 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 C 0.12 2.57 5.35 -5.19 -0.03 2.54 16 17 C -0.07 -1.39 5.45 -104.63 -0.57 -1.96 16 18 C -0.11 -2.06 8.94 -39.58 -0.35 -2.41 16 19 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 20 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16 21 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 22 C -0.10 -1.83 9.68 -39.58 -0.38 -2.21 16 23 N -0.30 -5.89 5.33 33.42 0.18 -5.71 16 24 N -0.27 -4.45 3.43 -6.85 -0.02 -4.48 16 25 C 0.15 2.06 5.98 -83.61 -0.50 1.56 16 26 C -0.12 -1.36 8.37 -39.39 -0.33 -1.69 16 27 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 28 C -0.12 -1.03 10.04 -39.55 -0.40 -1.43 16 29 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 30 C -0.11 -1.37 9.76 -39.39 -0.38 -1.75 16 31 H 0.07 0.68 7.84 -51.93 -0.41 0.28 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.66 7.18 -51.93 -0.37 0.28 16 34 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 35 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.42 7.97 -51.93 -0.41 1.01 16 37 H 0.12 2.52 4.49 -61.12 -0.27 2.25 16 38 H 0.13 2.53 4.40 -52.49 -0.23 2.30 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.13 1.30 6.76 -52.49 -0.35 0.95 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.14 1.88 6.95 -52.49 -0.36 1.52 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -34.10 388.81 -10.52 -44.62 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.78 Total: 6.14 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -6.42 Total: -17.23 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.59 Total: -38.68 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.07 Total: -17.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.84 Total: 16.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.10 -10.52 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170592254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.753 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds