Wall clock time and date at job start Tue Mar 31 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35334 * 126.42672 * 2 1 4 4 C 1.41582 * 105.55715 * 179.97438 * 3 2 1 5 5 C 1.47558 * 126.45018 * 180.26306 * 4 3 2 6 6 O 1.21609 * 119.99770 * 356.13632 * 5 4 3 7 7 N 1.34774 * 120.00114 * 176.14137 * 5 4 3 8 8 C 1.36895 * 120.00482 * 185.15335 * 7 5 4 9 9 H 1.07999 * 120.00505 * 172.77875 * 8 7 5 10 10 C 1.39030 * 119.99711 * 352.77095 * 8 7 5 11 11 N 1.31380 * 119.99965 * 90.71669 * 10 8 7 12 12 Si 1.86803 * 120.00177 * 270.72283 * 10 8 7 13 13 H 1.48499 * 109.46887 * 5.01085 * 12 10 8 14 14 H 1.48502 * 109.47019 * 125.00779 * 12 10 8 15 15 H 1.48489 * 109.47141 * 245.01133 * 12 10 8 16 16 C 1.46507 * 119.99770 * 5.14954 * 7 5 4 17 17 C 1.50693 * 109.47231 * 92.82560 * 16 7 5 18 18 C 1.38234 * 119.99858 * 275.44009 * 17 16 7 19 19 C 1.38244 * 119.99847 * 179.76369 * 18 17 16 20 20 C 1.38232 * 119.99767 * 0.51168 * 19 18 17 21 21 C 1.38234 * 120.00414 * 359.73900 * 20 19 18 22 22 C 1.38234 * 120.00170 * 95.71199 * 17 16 7 23 23 N 1.31907 * 107.10236 * 0.02562 * 4 3 2 24 24 N 1.28475 * 110.10994 * 359.97438 * 23 4 3 25 25 C 1.40097 * 124.95589 * 180.02562 * 24 23 4 26 26 C 1.38866 * 120.07046 * 137.26380 * 25 24 23 27 27 C 1.38115 * 119.92757 * 179.76457 * 26 25 24 28 28 C 1.38285 * 120.07113 * 0.51533 * 27 26 25 29 29 C 1.38285 * 120.13812 * 359.73955 * 28 27 26 30 30 C 1.38113 * 120.06848 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.47000 * 270.02023 * 1 2 3 32 32 H 1.09000 * 109.47429 * 30.02354 * 1 2 3 33 33 H 1.09005 * 109.47066 * 150.02183 * 1 2 3 34 34 H 1.07997 * 127.22187 * 0.02562 * 3 2 1 35 35 H 0.96994 * 120.00211 * 184.91952 * 11 10 8 36 36 H 1.09004 * 109.46937 * 212.82291 * 16 7 5 37 37 H 1.08996 * 109.46952 * 332.82140 * 16 7 5 38 38 H 1.08002 * 120.00362 * 0.02562 * 18 17 16 39 39 H 1.08000 * 119.99994 * 180.22928 * 19 18 17 40 40 H 1.08002 * 119.99699 * 179.71970 * 20 19 18 41 41 H 1.07998 * 119.99998 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00547 * 0.02562 * 22 17 16 43 43 H 1.07991 * 120.03328 * 0.02562 * 26 25 24 44 44 H 1.08002 * 119.96140 * 180.26902 * 27 26 25 45 45 H 1.08000 * 119.93278 * 179.76246 * 28 27 26 46 46 H 1.07998 * 119.96355 * 180.02562 * 29 28 27 47 47 H 1.08000 * 120.03091 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0889 0.0000 4 6 3.6335 0.5845 0.0006 5 6 4.8755 1.3813 0.0063 6 8 4.8200 2.5943 -0.0599 7 7 6.0713 0.7647 0.0847 8 6 7.2173 1.5051 0.1964 9 1 8.1622 1.0140 0.3763 10 6 7.1648 2.8894 0.0781 11 7 6.9869 3.6336 1.1461 12 14 7.3470 3.6911 -1.5993 13 1 7.4136 2.6396 -2.6458 14 1 6.1794 4.5720 -1.8563 15 1 8.5926 4.4987 -1.6291 16 6 6.1448 -0.6982 0.0506 17 6 6.3524 -1.1577 -1.3695 18 6 5.2668 -1.3162 -2.2103 19 6 5.4577 -1.7330 -3.5145 20 6 6.7332 -2.0015 -3.9746 21 6 7.8185 -1.8480 -3.1322 22 6 7.6280 -1.4261 -1.8296 23 7 3.5468 -0.7317 0.0004 24 7 2.3140 -1.0932 0.0002 25 6 1.8668 -2.4209 0.0004 26 6 0.8081 -2.7984 0.8159 27 6 0.3665 -4.1070 0.8102 28 6 0.9844 -5.0433 0.0015 29 6 2.0424 -4.6717 -0.8077 30 6 2.4848 -3.3633 -0.8109 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 2.0065 2.1252 0.0004 35 1 6.8788 4.5933 1.0559 36 1 6.9786 -1.0345 0.6669 37 1 5.2156 -1.1177 0.4361 38 1 4.2698 -1.1103 -1.8497 39 1 4.6098 -1.8533 -4.1726 40 1 6.8820 -2.3316 -4.9921 41 1 8.8150 -2.0582 -3.4916 42 1 8.4758 -1.3070 -1.1713 43 1 0.3278 -2.0685 1.4506 44 1 -0.4597 -4.4002 1.4409 45 1 0.6397 -6.0668 0.0017 46 1 2.5226 -5.4051 -1.4384 47 1 3.3109 -3.0737 -1.4434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170592254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:10 Heat of formation + Delta-G solvation = 135.299574 kcal Electronic energy + Delta-G solvation = -32810.956398 eV Core-core repulsion = 28733.914854 eV Total energy + Delta-G solvation = -4077.041544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -43.82681 -40.61247 -39.95256 -39.38150 -36.16388 -35.08204 -34.28086 -33.76941 -32.10709 -31.88341 -31.73114 -30.27655 -28.26443 -27.56393 -26.69271 -24.58053 -23.93054 -23.40853 -22.84931 -22.24379 -21.39406 -20.93558 -18.81674 -18.67095 -17.92901 -17.43338 -17.12598 -16.93643 -16.77779 -16.16759 -16.10199 -15.77068 -15.57402 -15.44870 -15.07796 -14.67579 -14.52888 -14.43549 -14.26304 -14.23167 -13.94736 -13.86136 -13.79878 -13.58104 -13.48194 -13.24498 -13.11456 -12.84620 -12.67362 -12.45300 -12.26759 -12.13500 -11.97589 -11.88442 -11.14052 -10.98156 -10.69017 -10.20235 -10.00391 -9.84555 -9.76203 -9.71874 -9.61103 -9.34622 -8.98570 -5.43766 -0.10290 0.34126 0.47519 0.55388 0.91227 1.20313 1.24043 1.43286 1.50654 1.55799 2.13867 2.49180 2.70533 2.83844 2.96994 3.27286 3.60631 3.72959 3.92335 3.94539 4.00364 4.07136 4.11538 4.20298 4.22262 4.34238 4.42392 4.42754 4.45574 4.55344 4.62138 4.68699 4.71011 4.73395 4.81640 4.94561 4.99733 5.02859 5.05772 5.16211 5.21811 5.26424 5.31241 5.38010 5.48362 5.51662 5.61433 5.62555 5.81968 5.85942 5.93755 6.17774 6.21598 6.66078 7.01616 7.24047 7.50012 8.00296 8.32634 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.004312 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.145219 B = 6492.194283 C = 8327.910752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.031 3.969 3 C -0.220 4.220 4 C 0.015 3.985 5 C 0.433 3.567 6 O -0.622 6.622 7 N -0.378 5.378 8 C -0.525 4.525 9 H 0.099 0.901 10 C 0.220 3.780 11 N -0.708 5.708 12 Si 0.846 3.154 13 H -0.282 1.282 14 H -0.294 1.294 15 H -0.264 1.264 16 C 0.121 3.879 17 C -0.093 4.093 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.116 4.116 23 N -0.288 5.288 24 N -0.252 5.252 25 C 0.104 3.896 26 C -0.121 4.121 27 C -0.097 4.097 28 C -0.107 4.107 29 C -0.104 4.104 30 C -0.123 4.123 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.287 0.713 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.141 0.859 44 H 0.167 0.833 45 H 0.164 0.836 46 H 0.151 0.849 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 -19.882 -4.081 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.247 4.247 4 C -0.144 4.144 5 C 0.227 3.773 6 O -0.513 6.513 7 N -0.091 5.091 8 C -0.640 4.640 9 H 0.117 0.883 10 C -0.015 4.015 11 N -0.328 5.328 12 Si 0.667 3.333 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.190 1.190 16 C -0.002 4.002 17 C -0.094 4.094 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.135 4.135 23 N -0.120 5.120 24 N -0.033 5.033 25 C 0.015 3.985 26 C -0.141 4.141 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.123 4.123 30 C -0.143 4.143 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.159 0.841 44 H 0.184 0.816 45 H 0.181 0.819 46 H 0.169 0.831 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.726 -20.255 -3.835 24.767 hybrid contribution 0.273 2.109 -0.643 2.222 sum -13.454 -18.146 -4.478 23.029 Atomic orbital electron populations 1.20579 0.83198 1.05022 1.04731 1.22060 0.96928 0.84923 1.05312 1.21557 0.90855 0.99979 1.12339 1.22236 0.95758 0.89754 1.06614 1.16827 0.81922 0.86606 0.91909 1.90450 1.84428 1.14415 1.62019 1.43496 1.04462 1.05036 1.56099 1.18257 0.87568 0.88838 1.69338 0.88345 1.25130 0.83586 0.96122 0.96630 1.70727 1.18485 1.08803 1.34791 0.87391 0.77024 0.78551 0.90356 1.20699 1.22033 1.18987 1.21140 1.04448 0.80704 0.93950 1.20208 0.94188 0.98524 0.96502 1.21466 0.99012 0.99218 0.94529 1.21370 0.98462 1.00558 0.95103 1.21431 0.92062 1.00004 1.00608 1.21417 1.00234 0.99771 0.93124 1.21269 0.96171 0.98858 0.97193 1.73545 1.01080 1.13760 1.23626 1.43146 1.02917 1.05403 1.51852 1.17957 0.99239 0.80085 1.01199 1.21327 0.96295 0.98799 0.97695 1.21441 1.00351 0.90811 0.98883 1.21729 0.94656 1.01418 0.94650 1.21369 0.97149 0.94239 0.99518 1.21219 1.00315 0.94229 0.98528 0.88256 0.88643 0.89474 0.83133 0.90153 0.91279 0.86225 0.86612 0.84780 0.83147 0.83566 0.86182 0.84105 0.81571 0.81889 0.83081 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 8.79 71.23 0.63 -0.85 16 2 C 0.03 0.97 6.74 41.26 0.28 1.25 16 3 C -0.22 -9.11 10.72 22.42 0.24 -8.87 16 4 C 0.02 0.74 6.50 42.42 0.28 1.02 16 5 C 0.43 25.13 7.60 86.70 0.66 25.79 16 6 O -0.62 -40.13 13.04 -4.06 -0.05 -40.18 16 7 N -0.38 -21.11 2.61 -643.19 -1.68 -22.78 16 8 C -0.52 -31.09 9.49 84.09 0.80 -30.30 16 9 H 0.10 5.73 8.06 -2.91 -0.02 5.71 16 10 C 0.22 13.08 2.99 84.95 0.25 13.33 16 11 N -0.71 -42.06 13.42 21.68 0.29 -41.77 16 12 Si 0.85 46.27 28.47 68.60 1.95 48.22 16 13 H -0.28 -16.00 7.11 99.48 0.71 -15.29 16 14 H -0.29 -16.95 7.11 99.48 0.71 -16.25 16 15 H -0.26 -13.09 7.11 99.48 0.71 -12.39 16 16 C 0.12 5.63 5.35 85.63 0.46 6.09 16 17 C -0.09 -3.92 5.45 -19.87 -0.11 -4.02 16 18 C -0.12 -4.87 8.94 22.27 0.20 -4.67 16 19 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16 20 C -0.12 -3.55 10.05 22.27 0.22 -3.32 16 21 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 22 C -0.12 -4.37 9.68 22.27 0.22 -4.16 16 23 N -0.29 -11.90 5.33 -48.19 -0.26 -12.15 16 24 N -0.25 -8.45 3.43 -175.58 -0.60 -9.05 16 25 C 0.10 2.71 5.98 38.12 0.23 2.93 16 26 C -0.12 -2.23 8.37 22.39 0.19 -2.04 16 27 C -0.10 -1.16 10.04 22.25 0.22 -0.93 16 28 C -0.11 -1.22 10.04 22.29 0.22 -0.99 16 29 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 30 C -0.12 -2.98 9.76 22.39 0.22 -2.76 16 31 H 0.10 1.46 7.84 -2.39 -0.02 1.45 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.37 7.18 -2.38 -0.02 1.35 16 34 H 0.15 6.19 8.06 -2.91 -0.02 6.17 16 35 H 0.29 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.07 3.07 7.97 -2.38 -0.02 3.05 16 37 H 0.12 5.45 4.49 -14.28 -0.06 5.38 16 38 H 0.12 4.79 4.40 -2.91 -0.01 4.78 16 39 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 42 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.14 2.26 6.76 -2.92 -0.02 2.24 16 44 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 45 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 46 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 47 H 0.11 3.22 6.95 -2.91 -0.02 3.20 16 Total: -1.00 -82.30 388.81 6.47 -75.83 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.95 Total: 23.81 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 5.87 Total: -21.92 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.24 Total: -85.76 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.05 Total: -40.18 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.95 Total: 48.22 kcal Total: -82.30 6.47 -75.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170592254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.129 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds