Wall clock time and date at job start Tue Mar 31 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 116.99788 * 2 1 4 4 C 1.38562 * 120.07662 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.00246 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.14617 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.92781 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47200 * 89.99514 * 7 6 5 9 9 C 1.34776 * 119.99888 * 269.99901 * 8 7 6 10 10 O 1.21692 * 119.99763 * 59.43167 * 9 8 7 11 11 C 1.46373 * 119.99964 * 239.42120 * 9 8 7 12 12 H 1.08003 * 119.99691 * 6.98915 * 11 9 8 13 13 C 1.40050 * 119.99860 * 186.98712 * 11 9 8 14 14 N 1.30668 * 120.00317 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99769 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47236 * 59.99711 * 15 13 11 17 17 H 1.48497 * 109.47097 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46959 * 299.99575 * 15 13 11 19 19 C 1.46502 * 119.99824 * 89.99800 * 8 7 6 20 20 H 1.08998 * 109.47199 * 254.90841 * 19 8 7 21 21 C 1.52999 * 109.47022 * 14.90906 * 19 8 7 22 22 C 1.52996 * 109.47385 * 60.00203 * 21 19 8 23 23 C 1.53005 * 109.47488 * 59.99185 * 22 21 19 24 24 C 1.52999 * 109.47473 * 300.00761 * 23 22 21 25 25 C 1.52999 * 109.47072 * 134.91087 * 19 8 7 26 26 H 1.08996 * 109.47580 * 180.02562 * 25 19 8 27 27 C 1.52998 * 109.47135 * 59.99692 * 25 19 8 28 28 C 1.38246 * 120.14474 * 0.27268 * 6 5 4 29 29 C 1.38566 * 119.99639 * 359.48949 * 28 6 5 30 30 O 1.35996 * 120.06851 * 180.25409 * 29 28 6 31 31 C 1.42898 * 117.00238 * 0.23677 * 30 29 28 32 32 H 1.09004 * 109.47453 * 60.00389 * 1 2 3 33 33 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47494 * 299.99948 * 1 2 3 35 35 H 1.08006 * 119.99919 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.92845 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47086 * 329.99802 * 7 6 5 38 38 H 1.09000 * 109.47210 * 209.99110 * 7 6 5 39 39 H 0.96991 * 120.00054 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.46739 * 179.97438 * 21 19 8 41 41 H 1.08996 * 109.47217 * 299.99562 * 21 19 8 42 42 H 1.09009 * 109.46765 * 300.00015 * 22 21 19 43 43 H 1.09001 * 109.47887 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47361 * 180.02562 * 23 22 21 45 45 H 1.09009 * 109.46440 * 60.00631 * 23 22 21 46 46 H 1.09005 * 109.46894 * 300.00111 * 24 23 22 47 47 H 1.08990 * 109.47507 * 179.97438 * 24 23 22 48 48 H 1.09001 * 109.46994 * 115.29818 * 27 25 19 49 49 H 1.09000 * 109.47471 * 235.29409 * 27 25 19 50 50 H 1.08998 * 109.47325 * 355.29758 * 27 25 19 51 51 H 1.07999 * 120.00070 * 179.75224 * 28 6 5 52 52 H 1.09008 * 109.47102 * 179.97438 * 31 30 29 53 53 H 1.09002 * 109.47148 * 299.99782 * 31 30 29 54 54 H 1.08999 * 109.47224 * 60.00123 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6057 -0.0011 6 6 3.3029 3.6798 -0.0005 7 6 3.9836 5.0243 -0.0005 8 7 4.2036 5.4603 1.3807 9 6 3.2634 6.1882 2.0154 10 8 2.1436 5.7364 2.1666 11 6 3.5894 7.5218 2.5230 12 1 4.5450 7.9688 2.2919 13 6 2.6620 8.2182 3.3082 14 7 1.5060 7.6771 3.5881 15 14 3.0777 9.9204 3.9553 16 1 3.3390 10.8338 2.8139 17 1 1.9373 10.4390 4.7526 18 1 4.2872 9.8420 4.8134 19 6 5.4455 5.1052 2.0720 20 1 5.2462 4.3120 2.7926 21 6 6.4764 4.6196 1.0511 22 6 6.7563 5.7329 0.0397 23 6 7.3019 6.9611 0.7710 24 6 6.2709 7.4467 1.7918 25 6 5.9912 6.3333 2.8033 26 1 6.9154 6.0692 3.3173 27 6 4.9602 6.8189 3.8241 28 6 4.0603 2.5233 -0.0052 29 6 3.4359 1.2863 0.0004 30 8 4.1795 0.1477 0.0010 31 6 5.6003 0.3007 0.0012 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 0.2145 2.3196 -0.0005 36 1 1.3341 4.5114 -0.0019 37 1 3.3540 5.7504 -0.5148 38 1 4.9420 4.9463 -0.5138 39 1 0.8639 8.1592 4.1322 40 1 7.4006 4.3558 1.5654 41 1 6.0877 3.7446 0.5302 42 1 5.8322 5.9972 -0.4746 43 1 7.4911 5.3872 -0.6874 44 1 7.5008 7.7544 0.0504 45 1 8.2260 6.6968 1.2853 46 1 5.3469 7.7109 1.2775 47 1 6.6598 8.3214 2.3131 48 1 5.3644 6.7068 4.8302 49 1 4.7321 7.8686 3.6391 50 1 4.0495 6.2273 3.7304 51 1 5.1385 2.5839 -0.0088 52 1 6.0716 -0.6823 0.0022 53 1 5.9066 0.8499 -0.8891 54 1 5.9064 0.8509 0.8909 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170599377.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:34 Heat of formation + Delta-G solvation = 17.698982 kcal Electronic energy + Delta-G solvation = -35855.082211 eV Core-core repulsion = 31569.172546 eV Total energy + Delta-G solvation = -4285.909665 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.99320 -41.29132 -39.37260 -38.17684 -38.09739 -35.91960 -34.34782 -33.72670 -31.71215 -31.28778 -30.51721 -29.06640 -28.50047 -28.05642 -26.58155 -25.58775 -23.33769 -23.13989 -22.64956 -22.00356 -21.30713 -20.46723 -19.39889 -18.10192 -17.88820 -17.79519 -17.29551 -16.99829 -16.34188 -16.20291 -16.11856 -16.03508 -15.87071 -15.54935 -15.28039 -15.00931 -14.69459 -14.57844 -14.24613 -14.13637 -13.90675 -13.55646 -13.38454 -13.19143 -13.14869 -13.08651 -12.81959 -12.75140 -12.57703 -12.45212 -12.26731 -12.15856 -12.09466 -12.05796 -11.94896 -11.84126 -11.79285 -11.34775 -11.07529 -10.79056 -10.73458 -10.63759 -10.20721 -9.65377 -9.40417 -8.77881 -8.54919 -8.06906 -6.08337 0.33328 0.48993 1.38787 1.40034 1.48537 2.25918 2.35460 2.37679 2.38843 2.67439 3.19813 3.49695 3.75114 3.92625 4.01732 4.03389 4.08465 4.16088 4.18687 4.35144 4.38507 4.40498 4.44383 4.46226 4.49412 4.50164 4.57415 4.67550 4.67945 4.75228 4.76946 4.78463 4.81553 4.90074 4.96595 5.01451 5.15107 5.20263 5.25907 5.30604 5.34859 5.38453 5.42622 5.52105 5.57898 5.63316 5.73097 5.75153 5.76598 5.82164 6.04944 6.11909 6.23439 6.42948 6.63755 6.85017 6.99561 7.60235 8.56170 8.77855 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.003966 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.700544 B = 7058.535320 C = 8862.435015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.075 3.925 4 C -0.177 4.177 5 C -0.100 4.100 6 C -0.095 4.095 7 C 0.161 3.839 8 N -0.668 5.668 9 C 0.560 3.440 10 O -0.598 6.598 11 C -0.533 4.533 12 H 0.138 0.862 13 C 0.017 3.983 14 N -0.822 5.822 15 Si 0.948 3.052 16 H -0.252 1.252 17 H -0.286 1.286 18 H -0.248 1.248 19 C 0.175 3.825 20 H 0.011 0.989 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.107 4.107 24 C -0.127 4.127 25 C -0.087 4.087 26 H 0.077 0.923 27 C -0.133 4.133 28 C -0.160 4.160 29 C 0.081 3.919 30 O -0.328 6.328 31 C 0.017 3.983 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.050 0.950 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.127 0.873 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.057 0.943 48 H -0.016 1.016 49 H 0.095 0.905 50 H 0.034 0.966 51 H 0.160 0.840 52 H 0.121 0.879 53 H 0.069 0.931 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 -8.004 -9.132 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.029 3.971 4 C -0.196 4.196 5 C -0.119 4.119 6 C -0.098 4.098 7 C 0.038 3.962 8 N -0.409 5.409 9 C 0.369 3.631 10 O -0.481 6.481 11 C -0.569 4.569 12 H 0.155 0.845 13 C -0.196 4.196 14 N -0.455 5.455 15 Si 0.769 3.231 16 H -0.176 1.176 17 H -0.212 1.212 18 H -0.172 1.172 19 C 0.071 3.929 20 H 0.029 0.971 21 C -0.161 4.161 22 C -0.165 4.165 23 C -0.144 4.144 24 C -0.164 4.164 25 C -0.106 4.106 26 H 0.095 0.905 27 C -0.189 4.189 28 C -0.179 4.179 29 C 0.036 3.964 30 O -0.242 6.242 31 C -0.078 4.078 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.117 0.883 37 H 0.063 0.937 38 H 0.144 0.856 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.003 0.997 49 H 0.113 0.887 50 H 0.053 0.947 51 H 0.177 0.823 52 H 0.140 0.860 53 H 0.088 0.912 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.926 -8.601 -8.942 16.532 hybrid contribution -1.108 1.036 1.086 1.865 sum 9.818 -7.565 -7.856 14.675 Atomic orbital electron populations 1.23288 0.77056 1.05426 1.01678 1.86079 1.22805 1.25781 1.89474 1.18360 0.89757 0.85202 1.03737 1.21125 1.00425 0.91240 1.06789 1.20774 0.95121 0.96540 0.99444 1.20527 0.93481 0.97053 0.98696 1.20603 1.00696 0.89815 0.85071 1.47076 1.19259 1.61163 1.13392 1.18279 0.82589 0.85506 0.76770 1.90539 1.26517 1.73606 1.57456 1.22627 1.04663 1.00096 1.29525 0.84529 1.26693 0.94588 1.02153 0.96160 1.70157 1.06986 1.38146 1.30222 0.85770 0.78920 0.78759 0.79611 1.17637 1.21192 1.17163 1.20694 0.84370 0.94468 0.93328 0.97073 1.21936 0.98321 0.98660 0.97179 1.21882 1.01723 0.95175 0.97757 1.21470 0.97785 0.97568 0.97624 1.21899 1.00063 0.97014 0.97388 1.21341 0.97488 0.95753 0.95994 0.90459 1.23431 0.96662 1.05010 0.93748 1.21170 1.01013 0.89585 1.06101 1.18346 0.88335 0.86610 1.03130 1.86101 1.20572 1.28163 1.89381 1.23360 0.76834 1.05442 1.02136 0.91818 0.85750 0.93118 0.84084 0.88279 0.93657 0.85564 0.92514 0.89174 0.91207 0.91324 0.89611 0.91379 0.91190 0.90425 0.92448 0.99724 0.88675 0.94703 0.82257 0.86037 0.91215 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.33 -10.59 10.28 -79.59 -0.82 -11.40 16 3 C 0.07 2.66 6.70 22.57 0.15 2.81 16 4 C -0.18 -6.47 9.04 22.35 0.20 -6.27 16 5 C -0.10 -4.08 8.90 22.27 0.20 -3.88 16 6 C -0.10 -3.54 5.41 -19.86 -0.11 -3.64 16 7 C 0.16 5.80 4.31 85.63 0.37 6.17 16 8 N -0.67 -27.80 1.97 -807.19 -1.59 -29.39 16 9 C 0.56 29.76 4.75 86.36 0.41 30.17 16 10 O -0.60 -37.79 14.66 -4.32 -0.06 -37.85 16 11 C -0.53 -26.96 4.27 18.86 0.08 -26.88 16 12 H 0.14 6.10 2.08 -2.91 -0.01 6.09 16 13 C 0.02 0.87 4.80 85.31 0.41 1.28 16 14 N -0.82 -48.89 11.85 21.84 0.26 -48.63 16 15 Si 0.95 39.37 28.25 68.60 1.94 41.31 16 16 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 19 C 0.18 6.15 2.92 44.99 0.13 6.28 16 20 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 21 C -0.12 -2.95 4.89 30.59 0.15 -2.80 16 22 C -0.13 -2.73 5.16 30.59 0.16 -2.57 16 23 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 24 C -0.13 -3.85 4.00 30.60 0.12 -3.73 16 25 C -0.09 -2.97 2.46 -10.79 -0.03 -3.00 16 26 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 27 C -0.13 -5.82 7.19 66.02 0.47 -5.34 16 28 C -0.16 -5.10 8.39 22.35 0.19 -4.91 16 29 C 0.08 2.75 6.70 22.57 0.15 2.90 16 30 O -0.33 -9.87 10.28 -79.63 -0.82 -10.69 16 31 C 0.02 0.31 9.81 113.37 1.11 1.43 16 32 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.18 7.66 -2.38 -0.02 1.17 16 35 H 0.14 4.52 6.30 -2.91 -0.02 4.51 16 36 H 0.10 4.57 7.75 -2.91 -0.02 4.55 16 37 H 0.04 1.78 7.97 -2.39 -0.02 1.76 16 38 H 0.13 3.52 3.52 -2.39 -0.01 3.51 16 39 H 0.26 14.78 8.29 -92.72 -0.77 14.01 16 40 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.07 1.57 4.09 -2.39 -0.01 1.56 16 42 H 0.07 1.70 4.86 -2.38 -0.01 1.68 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 46 H 0.08 2.84 5.01 -2.38 -0.01 2.83 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H -0.02 -0.67 8.14 -2.39 -0.02 -0.69 16 49 H 0.10 4.22 2.52 -39.94 -0.10 4.12 16 50 H 0.03 1.85 4.28 -2.39 -0.01 1.84 16 51 H 0.16 4.00 3.62 -2.91 -0.01 3.99 16 52 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 53 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 54 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 Total: -1.00 -75.83 386.42 5.23 -70.60 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.86 Total: 38.65 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 5.47 Total: -12.59 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.33 Total: -78.02 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -1.70 Total: -59.95 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.94 Total: 41.31 kcal Total: -75.83 5.23 -70.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170599377.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.299 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds