Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 117.00111 * 2 1 4 4 C 1.38139 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.39857 * 119.84703 * 179.97438 * 4 3 2 6 6 C 1.47177 * 120.07321 * 180.31953 * 5 4 3 7 7 C 1.34526 * 120.00348 * 222.61145 * 6 5 4 8 8 C 1.50700 * 120.00191 * 191.99653 * 7 6 5 9 9 C 1.47126 * 119.99916 * 11.99786 * 7 6 5 10 10 C 1.40784 * 119.29951 * 194.66470 * 9 7 6 11 11 C 1.36157 * 119.81450 * 179.97438 * 10 9 7 12 12 C 1.41046 * 118.34981 * 359.97438 * 11 10 9 13 13 C 1.40298 * 121.20039 * 180.02562 * 12 11 10 14 14 C 1.36230 * 119.66896 * 180.02562 * 13 12 11 15 15 C 1.39323 * 120.87638 * 359.90865 * 14 13 12 16 16 C 1.36097 * 121.03426 * 0.07438 * 15 14 13 17 17 C 1.40675 * 119.75551 * 359.97320 * 16 15 14 18 18 N 1.32289 * 119.29779 * 14.39327 * 9 7 6 19 19 C 1.39928 * 119.85759 * 0.04525 * 5 4 3 20 20 C 1.37712 * 120.00228 * 0.02562 * 19 5 4 21 21 C 1.39001 * 120.15740 * 359.95477 * 20 19 5 22 22 O 1.35667 * 119.92940 * 180.02562 * 21 20 19 23 23 C 1.34776 * 116.99982 * 6.02749 * 22 21 20 24 24 H 1.07997 * 120.00477 * 5.61624 * 23 22 21 25 25 C 1.38653 * 120.00025 * 185.61252 * 23 22 21 26 26 N 1.31555 * 120.00050 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00093 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47100 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47263 * 119.99934 * 27 25 23 30 30 H 1.48500 * 109.47117 * 240.00104 * 27 25 23 31 31 H 1.08997 * 109.46893 * 299.99513 * 1 2 3 32 32 H 1.08994 * 109.46976 * 59.99804 * 1 2 3 33 33 H 1.09000 * 109.46804 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.07837 * 0.02562 * 4 3 2 35 35 H 1.08009 * 120.00167 * 42.61675 * 6 5 4 36 36 H 1.09003 * 109.47047 * 90.00278 * 8 7 6 37 37 H 1.09006 * 109.47066 * 209.99720 * 8 7 6 38 38 H 1.08991 * 109.47277 * 330.00363 * 8 7 6 39 39 H 1.08001 * 120.09993 * 0.02562 * 10 9 7 40 40 H 1.07993 * 120.82925 * 179.97438 * 11 10 9 41 41 H 1.08004 * 120.16896 * 359.94544 * 13 12 11 42 42 H 1.08007 * 119.56089 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.47697 * 180.02562 * 15 14 13 44 44 H 1.08004 * 120.11756 * 179.97438 * 16 15 14 45 45 H 1.07999 * 119.99618 * 180.02562 * 19 5 4 46 46 H 1.08008 * 119.92116 * 179.97438 * 20 19 5 47 47 H 0.96992 * 120.00554 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2939 2.3699 -0.0005 5 6 1.9322 3.6143 0.0000 6 6 1.1355 4.8518 0.0065 7 6 1.4890 5.8836 -0.7810 8 6 0.8507 7.2345 -0.5848 9 6 2.4988 5.6931 -1.8339 10 6 3.0856 6.8212 -2.4380 11 6 4.0216 6.6571 -3.4131 12 6 4.3751 5.3441 -3.7879 13 6 5.3328 5.1059 -4.7851 14 6 5.6502 3.8249 -5.1230 15 6 5.0375 2.7457 -4.4897 16 6 4.1047 2.9397 -3.5180 17 6 3.7496 4.2480 -3.1422 18 7 2.8401 4.4653 -2.1891 19 6 3.3299 3.6803 0.0001 20 6 4.0740 2.5215 -0.0008 21 6 3.4400 1.2845 -0.0009 22 8 4.1776 0.1459 -0.0013 23 6 5.5126 0.2816 0.1245 24 1 5.9413 1.2552 0.3105 25 6 6.3356 -0.8289 0.0152 26 7 5.8135 -2.0149 -0.2119 27 14 8.1858 -0.6410 0.1903 28 1 8.5171 0.7849 0.4406 29 1 8.6616 -1.4664 1.3293 30 1 8.8496 -1.0919 -1.0592 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2153 2.3149 -0.0005 35 1 0.2671 4.9317 0.6437 36 1 1.4381 7.8139 0.1275 37 1 0.8139 7.7610 -1.5386 38 1 -0.1615 7.1059 -0.2015 39 1 2.7948 7.8142 -2.1283 40 1 4.4820 7.5109 -3.8877 41 1 5.8151 5.9339 -5.2834 42 1 6.3874 3.6435 -5.8912 43 1 5.3066 1.7394 -4.7751 44 1 3.6387 2.0923 -3.0371 45 1 3.8251 4.6401 0.0010 46 1 5.1528 2.5740 -0.0011 47 1 6.3892 -2.7916 -0.2887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170618828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = 51.179442 kcal Electronic energy + Delta-G solvation = -32336.569715 eV Core-core repulsion = 28223.587697 eV Total energy + Delta-G solvation = -4112.982018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.68293 -39.40886 -37.68855 -37.39747 -36.01275 -34.21999 -33.26886 -32.22991 -30.32857 -29.70708 -29.40375 -29.18440 -27.10743 -25.80114 -24.94315 -24.23661 -23.25155 -21.84015 -21.44202 -21.19467 -19.19740 -17.91848 -17.72481 -17.32306 -17.01984 -16.24276 -15.48602 -15.24825 -15.02199 -14.69938 -14.56877 -14.30630 -14.26868 -14.00702 -13.75917 -13.63498 -13.36410 -13.24184 -13.23179 -12.94374 -12.84069 -12.43072 -12.12060 -11.87297 -11.65470 -11.57684 -11.44038 -11.33557 -11.30095 -11.07725 -10.93566 -10.88209 -10.52530 -10.46787 -10.26163 -10.24344 -9.39166 -9.25228 -9.00372 -8.69053 -8.28875 -7.85146 -7.66217 -6.49405 -6.38987 -3.91874 0.47324 0.88369 1.78987 2.22256 2.43368 2.80395 3.15834 3.16564 3.21877 3.36905 4.00344 4.14442 4.33576 4.42761 4.65218 4.68865 4.84693 4.93902 5.03517 5.13448 5.18824 5.24061 5.28966 5.34330 5.41666 5.52420 5.55773 5.58362 5.62421 5.64917 5.74701 5.79918 5.88061 5.91228 5.96027 6.01034 6.08155 6.19465 6.28906 6.32997 6.43370 6.53672 6.61631 6.68447 6.72217 6.79199 6.90477 7.08759 7.10452 7.25250 7.32212 7.52326 7.74759 8.02789 8.26085 8.31435 9.06081 9.79869 10.78480 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.004458 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.679456 B = 6279.797764 C = 8435.007707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.044 3.956 4 C -0.142 4.142 5 C -0.112 4.112 6 C -0.024 4.024 7 C -0.141 4.141 8 C -0.101 4.101 9 C 0.193 3.807 10 C -0.168 4.168 11 C -0.068 4.068 12 C -0.110 4.110 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.108 4.108 16 C -0.072 4.072 17 C 0.134 3.866 18 N -0.429 5.429 19 C -0.035 4.035 20 C -0.214 4.214 21 C 0.144 3.856 22 O -0.163 6.163 23 C -0.385 4.385 24 H 0.090 0.910 25 C 0.040 3.960 26 N -0.856 5.856 27 Si 0.936 3.064 28 H -0.267 1.267 29 H -0.276 1.276 30 H -0.276 1.276 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.094 0.906 46 H 0.127 0.873 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 16.665 -5.648 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C 0.000 4.000 4 C -0.161 4.161 5 C -0.113 4.113 6 C -0.044 4.044 7 C -0.142 4.142 8 C -0.158 4.158 9 C 0.043 3.957 10 C -0.187 4.187 11 C -0.094 4.094 12 C -0.112 4.112 13 C -0.127 4.127 14 C -0.133 4.133 15 C -0.128 4.128 16 C -0.091 4.091 17 C 0.012 3.988 18 N -0.136 5.136 19 C -0.054 4.054 20 C -0.233 4.233 21 C 0.089 3.911 22 O -0.066 6.066 23 C -0.461 4.461 24 H 0.108 0.892 25 C -0.165 4.165 26 N -0.491 5.491 27 Si 0.761 3.239 28 H -0.191 1.191 29 H -0.202 1.202 30 H -0.202 1.202 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.112 0.888 46 H 0.144 0.856 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.668 15.180 -5.379 17.430 hybrid contribution 1.232 1.039 -0.418 1.665 sum -5.436 16.219 -5.797 18.061 Atomic orbital electron populations 1.22837 0.80715 1.02624 1.00103 1.86219 1.19105 1.26619 1.90037 1.17956 0.89329 0.84281 1.08475 1.20655 0.97950 0.90972 1.06516 1.17889 0.92396 0.91093 1.09931 1.21991 0.95936 0.91791 0.94713 1.20345 1.00046 0.96248 0.97515 1.20639 0.99993 0.93457 1.01706 1.20007 0.93437 0.88083 0.94163 1.21832 0.98592 0.99829 0.98494 1.21268 0.96163 0.95856 0.96101 1.18879 0.99319 0.94044 0.98955 1.20855 0.97457 0.97252 0.97122 1.20898 0.99814 0.92632 0.99964 1.20933 0.96164 0.99467 0.96236 1.20985 0.96625 0.95580 0.95865 1.18954 0.93996 0.93308 0.92581 1.68876 1.12305 1.22103 1.10342 1.20459 0.92314 0.96248 0.96389 1.20689 1.00018 0.90918 1.11716 1.18717 0.88202 0.87490 0.96660 1.84034 1.19303 1.25388 1.77847 1.21366 0.78862 0.96059 1.49810 0.89244 1.25247 1.00076 0.94384 0.96746 1.70069 1.35726 0.98605 1.44656 0.85720 0.81116 0.78793 0.78274 1.19145 1.20166 1.20156 0.93769 0.93759 0.89344 0.86707 0.86635 0.91601 0.92121 0.91632 0.85030 0.85050 0.85948 0.85995 0.85362 0.84474 0.88811 0.85570 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.31 -6.85 10.28 -34.21 -0.35 -7.20 16 3 C 0.04 1.00 6.70 -39.12 -0.26 0.74 16 4 C -0.14 -2.68 8.77 -39.01 -0.34 -3.02 16 5 C -0.11 -2.02 4.34 -105.03 -0.46 -2.48 16 6 C -0.02 -0.35 9.40 -37.27 -0.35 -0.70 16 7 C -0.14 -1.86 5.83 -102.33 -0.60 -2.46 16 8 C -0.10 -0.93 9.24 36.01 0.33 -0.60 16 9 C 0.19 2.90 5.42 -83.10 -0.45 2.45 16 10 C -0.17 -2.07 9.20 -39.37 -0.36 -2.43 16 11 C -0.07 -0.83 9.87 -39.27 -0.39 -1.22 16 12 C -0.11 -1.61 5.75 -106.71 -0.61 -2.22 16 13 C -0.11 -1.36 9.76 -39.53 -0.39 -1.75 16 14 C -0.12 -1.48 9.96 -39.90 -0.40 -1.88 16 15 C -0.11 -1.65 9.94 -39.95 -0.40 -2.04 16 16 C -0.07 -1.29 9.98 -39.43 -0.39 -1.68 16 17 C 0.13 2.33 6.60 -84.86 -0.56 1.77 16 18 N -0.43 -7.57 5.59 -7.70 -0.04 -7.62 16 19 C -0.04 -0.69 6.59 -39.14 -0.26 -0.95 16 20 C -0.21 -4.81 9.11 -39.49 -0.36 -5.17 16 21 C 0.14 3.59 6.67 -38.80 -0.26 3.33 16 22 O -0.16 -4.77 9.53 -14.16 -0.13 -4.90 16 23 C -0.38 -10.88 9.43 30.89 0.29 -10.59 16 24 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 25 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 26 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 27 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 28 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 29 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 30 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 31 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 32 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 35 H 0.12 1.36 8.05 -52.48 -0.42 0.94 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.50 7.11 -51.93 -0.37 0.13 16 38 H 0.06 0.52 8.07 -51.93 -0.42 0.11 16 39 H 0.13 1.22 6.79 -52.49 -0.36 0.87 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 43 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.14 2.77 8.06 -52.48 -0.42 2.35 16 45 H 0.09 1.77 7.03 -52.49 -0.37 1.40 16 46 H 0.13 2.92 5.70 -52.48 -0.30 2.62 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -33.67 392.31 -9.93 -43.59 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.73 Total: 7.42 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -5.31 Total: -28.37 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.72 Total: -32.26 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.49 Total: -12.10 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.67 -9.93 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170618828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.774 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds