Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 117.00111 * 2 1 4 4 C 1.38139 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.39857 * 119.84703 * 179.97438 * 4 3 2 6 6 C 1.47177 * 120.07321 * 180.31953 * 5 4 3 7 7 C 1.34526 * 120.00348 * 222.61145 * 6 5 4 8 8 C 1.50700 * 120.00191 * 191.99653 * 7 6 5 9 9 C 1.47126 * 119.99916 * 11.99786 * 7 6 5 10 10 C 1.40784 * 119.29951 * 194.66470 * 9 7 6 11 11 C 1.36157 * 119.81450 * 179.97438 * 10 9 7 12 12 C 1.41046 * 118.34981 * 359.97438 * 11 10 9 13 13 C 1.40298 * 121.20039 * 180.02562 * 12 11 10 14 14 C 1.36230 * 119.66896 * 180.02562 * 13 12 11 15 15 C 1.39323 * 120.87638 * 359.90865 * 14 13 12 16 16 C 1.36097 * 121.03426 * 0.07438 * 15 14 13 17 17 C 1.40675 * 119.75551 * 359.97320 * 16 15 14 18 18 N 1.32289 * 119.29779 * 14.39327 * 9 7 6 19 19 C 1.39928 * 119.85759 * 0.04525 * 5 4 3 20 20 C 1.37712 * 120.00228 * 0.02562 * 19 5 4 21 21 C 1.39001 * 120.15740 * 359.95477 * 20 19 5 22 22 O 1.35667 * 119.92940 * 180.02562 * 21 20 19 23 23 C 1.34776 * 116.99982 * 6.02749 * 22 21 20 24 24 H 1.07997 * 120.00477 * 5.61624 * 23 22 21 25 25 C 1.38653 * 120.00025 * 185.61252 * 23 22 21 26 26 N 1.31555 * 120.00050 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00093 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47100 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47263 * 119.99934 * 27 25 23 30 30 H 1.48500 * 109.47117 * 240.00104 * 27 25 23 31 31 H 1.08997 * 109.46893 * 299.99513 * 1 2 3 32 32 H 1.08994 * 109.46976 * 59.99804 * 1 2 3 33 33 H 1.09000 * 109.46804 * 179.97438 * 1 2 3 34 34 H 1.07998 * 120.07837 * 0.02562 * 4 3 2 35 35 H 1.08009 * 120.00167 * 42.61675 * 6 5 4 36 36 H 1.09003 * 109.47047 * 90.00278 * 8 7 6 37 37 H 1.09006 * 109.47066 * 209.99720 * 8 7 6 38 38 H 1.08991 * 109.47277 * 330.00363 * 8 7 6 39 39 H 1.08001 * 120.09993 * 0.02562 * 10 9 7 40 40 H 1.07993 * 120.82925 * 179.97438 * 11 10 9 41 41 H 1.08004 * 120.16896 * 359.94544 * 13 12 11 42 42 H 1.08007 * 119.56089 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.47697 * 180.02562 * 15 14 13 44 44 H 1.08004 * 120.11756 * 179.97438 * 16 15 14 45 45 H 1.07999 * 119.99618 * 180.02562 * 19 5 4 46 46 H 1.08008 * 119.92116 * 179.97438 * 20 19 5 47 47 H 0.96992 * 120.00554 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2939 2.3699 -0.0005 5 6 1.9322 3.6143 0.0000 6 6 1.1355 4.8518 0.0065 7 6 1.4890 5.8836 -0.7810 8 6 0.8507 7.2345 -0.5848 9 6 2.4988 5.6931 -1.8339 10 6 3.0856 6.8212 -2.4380 11 6 4.0216 6.6571 -3.4131 12 6 4.3751 5.3441 -3.7879 13 6 5.3328 5.1059 -4.7851 14 6 5.6502 3.8249 -5.1230 15 6 5.0375 2.7457 -4.4897 16 6 4.1047 2.9397 -3.5180 17 6 3.7496 4.2480 -3.1422 18 7 2.8401 4.4653 -2.1891 19 6 3.3299 3.6803 0.0001 20 6 4.0740 2.5215 -0.0008 21 6 3.4400 1.2845 -0.0009 22 8 4.1776 0.1459 -0.0013 23 6 5.5126 0.2816 0.1245 24 1 5.9413 1.2552 0.3105 25 6 6.3356 -0.8289 0.0152 26 7 5.8135 -2.0149 -0.2119 27 14 8.1858 -0.6410 0.1903 28 1 8.5171 0.7849 0.4406 29 1 8.6616 -1.4664 1.3293 30 1 8.8496 -1.0919 -1.0592 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2153 2.3149 -0.0005 35 1 0.2671 4.9317 0.6437 36 1 1.4381 7.8139 0.1275 37 1 0.8139 7.7610 -1.5386 38 1 -0.1615 7.1059 -0.2015 39 1 2.7948 7.8142 -2.1283 40 1 4.4820 7.5109 -3.8877 41 1 5.8151 5.9339 -5.2834 42 1 6.3874 3.6435 -5.8912 43 1 5.3066 1.7394 -4.7751 44 1 3.6387 2.0923 -3.0371 45 1 3.8251 4.6401 0.0010 46 1 5.1528 2.5740 -0.0011 47 1 6.3892 -2.7916 -0.2887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170618828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = 32.416831 kcal Electronic energy + Delta-G solvation = -32337.383323 eV Core-core repulsion = 28223.587697 eV Total energy + Delta-G solvation = -4113.795626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84292 -41.06313 -39.19384 -38.91718 -37.47553 -35.44044 -34.38239 -34.21037 -31.66983 -31.10827 -30.65242 -30.51973 -28.41389 -27.50551 -26.52301 -25.37317 -24.38271 -23.16483 -22.91680 -22.76191 -20.37672 -19.81664 -19.25603 -18.61841 -18.14471 -17.83280 -16.97460 -16.67219 -16.59808 -16.33280 -15.84826 -15.65851 -15.50833 -15.34610 -15.11388 -15.07870 -14.99892 -14.68062 -14.19253 -14.08423 -13.93500 -13.72073 -13.53997 -13.42915 -13.05830 -12.82503 -12.72457 -12.67600 -12.61793 -12.47511 -12.39429 -12.21757 -12.13340 -11.87415 -11.76815 -11.40706 -11.33225 -10.84289 -10.34948 -10.11345 -9.53301 -9.22886 -9.10159 -8.43614 -8.12451 -6.06557 -0.64920 -0.21973 0.45391 0.67547 1.15892 1.30493 1.34858 1.48253 1.48988 2.16802 2.24541 2.62943 2.89278 3.22251 3.25096 3.29636 3.48836 3.67198 3.76519 3.94858 3.97816 4.06142 4.11576 4.25916 4.28123 4.29509 4.34379 4.42015 4.44864 4.52826 4.59011 4.63779 4.69087 4.77618 4.82313 4.93122 4.99005 5.02267 5.04585 5.11276 5.12944 5.16058 5.25820 5.38485 5.45402 5.51825 5.53600 5.59059 5.72714 5.73818 5.98922 5.99596 6.01255 6.11201 6.70553 7.00661 7.13301 7.86734 8.80137 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.004458 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.679456 B = 6279.797764 C = 8435.007707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.037 3.963 4 C -0.145 4.145 5 C -0.071 4.071 6 C -0.063 4.063 7 C -0.107 4.107 8 C -0.101 4.101 9 C 0.168 3.832 10 C -0.163 4.163 11 C -0.058 4.058 12 C -0.124 4.124 13 C -0.092 4.092 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.113 4.113 17 C 0.109 3.891 18 N -0.473 5.473 19 C -0.040 4.040 20 C -0.206 4.206 21 C 0.092 3.908 22 O -0.222 6.222 23 C -0.405 4.405 24 H 0.091 0.909 25 C -0.022 4.022 26 N -0.918 5.918 27 Si 1.013 2.987 28 H -0.256 1.256 29 H -0.266 1.266 30 H -0.265 1.265 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.173 0.827 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.258 23.049 -6.638 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.263 6.263 3 C -0.008 4.008 4 C -0.164 4.164 5 C -0.072 4.072 6 C -0.083 4.083 7 C -0.107 4.107 8 C -0.157 4.157 9 C 0.018 3.982 10 C -0.183 4.183 11 C -0.083 4.083 12 C -0.126 4.126 13 C -0.110 4.110 14 C -0.139 4.139 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.013 4.013 18 N -0.181 5.181 19 C -0.059 4.059 20 C -0.225 4.225 21 C 0.042 3.958 22 O -0.129 6.129 23 C -0.481 4.481 24 H 0.108 0.892 25 C -0.219 4.219 26 N -0.557 5.557 27 Si 0.833 3.167 28 H -0.180 1.180 29 H -0.191 1.191 30 H -0.190 1.190 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.190 0.810 40 H 0.195 0.805 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.144 0.856 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.503 21.625 -6.369 23.759 hybrid contribution 1.129 -0.499 -0.254 1.260 sum -6.374 21.125 -6.622 23.038 Atomic orbital electron populations 1.23199 0.77406 1.04637 1.01789 1.86158 1.22741 1.27248 1.90159 1.18287 0.88908 0.85621 1.07987 1.21050 0.99505 0.90017 1.05855 1.18409 0.92120 0.92813 1.03890 1.22127 0.97787 0.90272 0.98130 1.20949 0.97340 0.97639 0.94820 1.20789 1.00921 0.90672 1.03348 1.20644 0.94167 0.88395 0.94968 1.22213 0.97842 1.00516 0.97709 1.21781 0.95363 0.95737 0.95411 1.19228 0.99561 0.94528 0.99284 1.21375 0.95791 0.98264 0.95573 1.21216 1.00190 0.92057 1.00442 1.21109 0.95505 1.00768 0.95639 1.20758 0.99120 0.95217 0.98122 1.19002 0.95007 0.93617 0.93635 1.68730 1.13631 1.24153 1.11543 1.20497 0.93209 0.95270 0.96968 1.20620 0.99289 0.91474 1.11161 1.19245 0.89528 0.87479 0.99566 1.83986 1.19700 1.27509 1.81740 1.21721 0.79416 0.96509 1.50445 0.89159 1.26495 1.05490 0.93663 0.96221 1.70222 1.37782 0.99665 1.48016 0.84615 0.74053 0.79289 0.78757 1.17978 1.19079 1.19028 0.91471 0.92320 0.87435 0.83199 0.82938 0.89512 0.90418 0.89741 0.80970 0.80470 0.81427 0.82579 0.85609 0.89357 0.87782 0.87511 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.81 113.37 1.11 1.88 16 2 O -0.35 -16.81 10.28 -79.05 -0.81 -17.62 16 3 C 0.04 1.78 6.70 22.57 0.15 1.93 16 4 C -0.15 -5.59 8.77 22.64 0.20 -5.39 16 5 C -0.07 -2.56 4.34 -20.13 -0.09 -2.65 16 6 C -0.06 -1.62 9.40 23.77 0.22 -1.39 16 7 C -0.11 -2.38 5.83 -18.38 -0.11 -2.48 16 8 C -0.10 -1.21 9.24 71.24 0.66 -0.55 16 9 C 0.17 4.57 5.42 42.03 0.23 4.80 16 10 C -0.16 -3.20 9.20 22.41 0.21 -3.00 16 11 C -0.06 -1.11 9.87 22.47 0.22 -0.89 16 12 C -0.12 -3.33 5.75 -21.22 -0.12 -3.45 16 13 C -0.09 -2.00 9.76 22.30 0.22 -1.79 16 14 C -0.12 -2.96 9.96 22.06 0.22 -2.74 16 15 C -0.11 -3.61 9.94 22.03 0.22 -3.39 16 16 C -0.11 -4.48 9.98 22.37 0.22 -4.26 16 17 C 0.11 3.89 6.60 40.35 0.27 4.15 16 18 N -0.47 -16.73 5.59 -178.26 -1.00 -17.72 16 19 C -0.04 -1.65 6.59 22.55 0.15 -1.50 16 20 C -0.21 -10.16 9.11 22.33 0.20 -9.96 16 21 C 0.09 5.11 6.67 22.77 0.15 5.26 16 22 O -0.22 -14.61 9.53 -7.30 -0.07 -14.68 16 23 C -0.40 -25.34 9.43 67.92 0.64 -24.70 16 24 H 0.09 5.33 5.29 -2.91 -0.02 5.32 16 25 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 26 N -0.92 -59.49 13.67 21.61 0.30 -59.19 16 27 Si 1.01 45.64 29.55 68.60 2.03 47.66 16 28 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 30 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 31 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 32 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 33 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.15 4.60 6.28 -2.91 -0.02 4.58 16 35 H 0.15 2.86 8.05 -2.91 -0.02 2.83 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.74 7.11 -2.38 -0.02 0.72 16 38 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 39 H 0.17 1.94 6.79 -2.91 -0.02 1.92 16 40 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 44 H 0.09 4.23 8.06 -2.91 -0.02 4.20 16 45 H 0.10 3.96 7.03 -2.91 -0.02 3.94 16 46 H 0.11 5.53 5.70 -2.91 -0.02 5.51 16 47 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -88.14 392.31 6.89 -81.25 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 1.01 Total: 31.24 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 5.44 Total: -50.94 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -0.70 Total: -76.92 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.88 Total: -32.30 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -88.14 6.89 -81.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170618828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.668 kcal (2) G-P(sol) polarization free energy of solvation -88.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds