Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53112 * 109.52185 * 2 1 4 4 C 1.53043 * 109.27980 * 182.44167 * 3 2 1 5 5 N 1.46847 * 109.51945 * 59.17417 * 4 3 2 6 6 C 1.37599 * 110.99870 * 174.16396 * 5 4 3 7 7 N 1.31761 * 125.30184 * 0.17775 * 6 5 4 8 8 C 1.33395 * 109.96874 * 180.23969 * 7 6 5 9 9 C 1.39079 * 107.55259 * 359.76127 * 8 7 6 10 10 C 1.40610 * 119.22285 * 180.02562 * 9 8 7 11 11 O 1.21867 * 120.34873 * 180.02562 * 10 9 8 12 12 N 1.34911 * 119.30216 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.49652 * 179.97438 * 12 10 9 14 14 C 1.34415 * 120.99947 * 0.02562 * 12 10 9 15 15 O 1.21606 * 119.19123 * 180.02562 * 14 12 10 16 16 N 1.34633 * 121.61577 * 0.02562 * 14 12 10 17 17 C 1.46501 * 119.97323 * 179.97438 * 16 14 12 18 18 N 1.35923 * 125.30587 * 180.02562 * 6 5 4 19 19 C 1.46506 * 126.63021 * 0.02939 * 18 6 5 20 20 C 1.50703 * 109.47289 * 269.71466 * 19 18 6 21 21 H 1.07994 * 119.99399 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99789 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00144 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99733 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47181 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46716 * 120.00463 * 24 22 20 27 27 H 1.48500 * 109.46999 * 240.00161 * 24 22 20 28 28 C 1.46845 * 111.20035 * 298.25825 * 5 4 3 29 29 C 1.53043 * 109.51994 * 61.74836 * 28 5 4 30 30 H 1.08999 * 109.47665 * 59.99816 * 1 2 3 31 31 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47100 * 299.99968 * 1 2 3 33 33 H 1.08998 * 109.57407 * 120.15585 * 2 1 3 34 34 H 1.08999 * 109.50879 * 62.49731 * 3 2 1 35 35 H 1.08999 * 109.50492 * 302.37942 * 3 2 1 36 36 H 1.09000 * 109.46157 * 299.16486 * 4 3 2 37 37 H 1.08997 * 109.46269 * 179.19230 * 4 3 2 38 38 H 1.09001 * 109.46920 * 89.99987 * 13 12 10 39 39 H 1.08998 * 109.46702 * 210.00038 * 13 12 10 40 40 H 1.08994 * 109.46966 * 329.99923 * 13 12 10 41 41 H 1.09007 * 109.47206 * 359.97438 * 17 16 14 42 42 H 1.09006 * 109.47034 * 119.99799 * 17 16 14 43 43 H 1.09002 * 109.47784 * 239.99853 * 17 16 14 44 44 H 1.09001 * 109.47060 * 29.71916 * 19 18 6 45 45 H 1.09004 * 109.47073 * 149.71405 * 19 18 6 46 46 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.45979 * 181.75372 * 28 5 4 48 48 H 1.08993 * 109.46801 * 301.72875 * 28 5 4 49 49 H 1.08999 * 109.49877 * 180.88127 * 29 28 5 50 50 H 1.08999 * 109.50535 * 60.75834 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4431 0.0000 4 6 3.5708 1.4371 -0.0615 5 7 4.0102 0.7429 -1.2787 6 6 5.3747 0.8317 -1.4317 7 7 6.1949 1.4492 -0.6059 8 6 7.4488 1.3503 -1.0503 9 6 7.4183 0.6176 -2.2321 10 6 8.6216 0.3645 -2.9141 11 8 8.6186 -0.2748 -3.9516 12 7 9.7793 0.8379 -2.4084 13 6 11.0356 0.5762 -3.1153 14 6 9.7977 1.5450 -1.2655 15 8 10.8598 1.9564 -0.8396 16 7 8.6690 1.8090 -0.5806 17 6 8.7308 2.5828 0.6618 18 7 6.0869 0.2937 -2.4568 19 6 5.5525 -0.4744 -3.5841 20 6 5.5365 -1.9394 -3.2313 21 1 5.8888 -2.2656 -2.2639 22 6 5.0711 -2.8630 -4.1430 23 7 4.6416 -2.4656 -5.3208 24 14 5.0520 -4.6791 -3.7059 25 1 5.5838 -4.8630 -2.3317 26 1 3.6587 -5.1888 -3.7695 27 1 5.8979 -5.4289 -4.6690 28 6 3.5708 -0.6583 -1.2789 29 6 2.0416 -0.7147 -1.2538 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8952 -0.5159 0.8880 34 1 1.7161 1.9447 0.9113 35 1 1.6447 1.9700 -0.8677 36 1 3.9675 0.9221 0.8134 37 1 3.9378 2.4633 -0.0762 38 1 11.2263 1.3797 -3.8267 39 1 11.8532 0.5259 -2.3963 40 1 10.9618 -0.3714 -3.6486 41 1 9.7658 2.8548 0.8694 42 1 8.1311 3.4870 0.5569 43 1 8.3416 1.9821 1.4839 44 1 4.5374 -0.1419 -3.8016 45 1 6.1814 -0.3186 -4.4607 46 1 4.3146 -3.1154 -5.9624 47 1 3.9377 -1.1538 -2.1778 48 1 3.9674 -1.1634 -0.3982 49 1 1.7161 -1.7548 -1.2381 50 1 1.6446 -0.2218 -2.1412 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170624233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = 12.109540 kcal Electronic energy + Delta-G solvation = -34783.028830 eV Core-core repulsion = 30425.629197 eV Total energy + Delta-G solvation = -4357.399633 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.03315 -42.34101 -40.21765 -39.94372 -37.56747 -36.42266 -35.95696 -35.42138 -34.02841 -31.76260 -31.48364 -29.65314 -29.23075 -27.90661 -27.63213 -25.46839 -24.65989 -24.55517 -23.58043 -23.28546 -21.45330 -20.54329 -20.33883 -19.40974 -18.90737 -18.36131 -18.18431 -17.78036 -16.93712 -16.70240 -16.67205 -16.49635 -16.00810 -15.90528 -15.64366 -15.36680 -15.30766 -14.90682 -14.69586 -14.61887 -14.26547 -13.96016 -13.89478 -13.86284 -13.39581 -13.26964 -13.23295 -13.01082 -12.83517 -12.79510 -12.62763 -12.39272 -12.25547 -12.17188 -12.13136 -11.73207 -11.65906 -11.42114 -11.31411 -11.15067 -11.02917 -10.98058 -10.76377 -10.72653 -10.06103 -8.81885 -8.35931 -6.50633 -0.11048 0.67349 0.82221 1.26412 1.33713 1.37528 1.47594 1.52841 1.84653 2.28702 2.34641 2.63030 2.94390 3.10989 3.37650 3.83596 3.89864 3.93791 4.05794 4.09966 4.29504 4.31496 4.33590 4.39416 4.40687 4.42253 4.51437 4.56906 4.66229 4.69420 4.73972 4.76596 4.81077 4.85594 4.87942 4.95709 5.02319 5.10344 5.14329 5.17537 5.25646 5.31747 5.36907 5.44817 5.50599 5.56650 5.62614 5.72628 5.77914 6.04575 6.19447 6.38318 6.52050 6.57627 6.84214 7.16637 8.71377 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.008149 B = 0.004745 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.121545 B = 5899.584308 C = 8754.449516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.104 4.104 4 C 0.073 3.927 5 N -0.451 5.451 6 C 0.461 3.539 7 N -0.522 5.522 8 C 0.326 3.674 9 C -0.186 4.186 10 C 0.584 3.416 11 O -0.537 6.537 12 N -0.554 5.554 13 C 0.083 3.917 14 C 0.710 3.290 15 O -0.554 6.554 16 N -0.506 5.506 17 C 0.088 3.912 18 N -0.402 5.402 19 C 0.258 3.742 20 C -0.539 4.539 21 H 0.052 0.948 22 C 0.032 3.968 23 N -0.909 5.909 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.261 1.261 27 H -0.281 1.281 28 C 0.028 3.972 29 C -0.102 4.102 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.025 0.975 46 H 0.273 0.727 47 H 0.107 0.893 48 H 0.035 0.965 49 H 0.076 0.924 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 8.089 13.128 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.142 4.142 4 C -0.053 4.053 5 N -0.173 5.173 6 C 0.108 3.892 7 N -0.253 5.253 8 C 0.091 3.909 9 C -0.303 4.303 10 C 0.381 3.619 11 O -0.414 6.414 12 N -0.299 5.299 13 C -0.057 4.057 14 C 0.413 3.587 15 O -0.429 6.429 16 N -0.234 5.234 17 C -0.052 4.052 18 N -0.084 5.084 19 C 0.138 3.862 20 C -0.576 4.576 21 H 0.070 0.930 22 C -0.170 4.170 23 N -0.546 5.546 24 Si 0.784 3.216 25 H -0.195 1.195 26 H -0.186 1.186 27 H -0.207 1.207 28 C -0.098 4.098 29 C -0.140 4.140 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.125 0.875 48 H 0.054 0.946 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.466 8.434 12.770 15.501 hybrid contribution 0.689 -1.796 -0.759 2.068 sum -1.777 6.638 12.011 13.838 Atomic orbital electron populations 1.21749 0.93455 1.02072 1.02391 1.21237 0.96904 0.95912 0.97136 1.21714 0.91872 0.96872 1.03746 1.22174 0.97073 0.99033 0.86992 1.58375 1.01493 1.17162 1.40278 1.21109 0.90161 0.93346 0.84595 1.69850 0.97264 1.30289 1.27900 1.17899 0.87494 0.95081 0.90443 1.18844 0.87459 1.19365 1.04679 1.15549 0.82789 0.79128 0.84475 1.90931 1.86721 1.39643 1.24134 1.45916 1.10581 1.50001 1.23365 1.22076 0.81846 1.03833 0.97914 1.15445 0.83735 0.79548 0.79999 1.90955 1.26953 1.56338 1.68702 1.43905 1.00835 1.52533 1.26158 1.22171 1.05845 0.95779 0.81421 1.45367 1.03715 1.38863 1.20500 1.19524 0.94534 0.90406 0.81699 1.21112 1.44448 0.90559 1.01518 0.92984 1.25611 0.93843 1.03374 0.94216 1.70013 1.41208 1.36583 1.06808 0.85473 0.78722 0.79054 0.78347 1.19463 1.18582 1.20709 1.22962 0.98330 0.84328 1.04139 1.21617 0.91637 1.01449 0.99307 0.92696 0.92582 0.91162 0.90993 0.88129 0.91157 0.93129 0.89309 0.89465 0.87244 0.89443 0.87375 0.89204 0.89514 0.93181 0.95697 0.91732 0.87491 0.94615 0.90588 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.20 71.98 0.66 -1.59 16 2 C -0.09 -1.89 2.79 -10.72 -0.03 -1.92 16 3 C -0.10 -2.02 5.38 30.65 0.16 -1.86 16 4 C 0.07 1.86 4.82 86.33 0.42 2.28 16 5 N -0.45 -15.31 4.60 -707.20 -3.26 -18.57 16 6 C 0.46 18.17 7.08 260.62 1.85 20.02 16 7 N -0.52 -18.90 10.08 -194.27 -1.96 -20.86 16 8 C 0.33 12.17 7.68 132.90 1.02 13.19 16 9 C -0.19 -8.20 6.91 38.81 0.27 -7.93 16 10 C 0.58 25.51 7.42 84.80 0.63 26.14 16 11 O -0.54 -27.13 15.56 -4.89 -0.08 -27.20 16 12 N -0.55 -19.63 2.96 -807.43 -2.39 -22.01 16 13 C 0.08 2.29 10.09 127.77 1.29 3.58 16 14 C 0.71 23.59 8.12 179.21 1.45 25.04 16 15 O -0.55 -18.15 15.02 -4.05 -0.06 -18.21 16 16 N -0.51 -15.95 3.06 -678.14 -2.07 -18.03 16 17 C 0.09 1.91 10.62 127.77 1.36 3.27 16 18 N -0.40 -18.41 2.81 -521.41 -1.46 -19.87 16 19 C 0.26 13.32 4.79 85.63 0.41 13.73 16 20 C -0.54 -28.70 6.88 25.60 0.18 -28.52 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 22 C 0.03 1.70 5.46 84.65 0.46 2.16 16 23 N -0.91 -50.55 13.29 21.45 0.28 -50.27 16 24 Si 0.96 41.90 29.54 68.60 2.03 43.92 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 C 0.03 0.97 5.15 86.33 0.44 1.41 16 29 C -0.10 -2.79 5.38 30.65 0.16 -2.62 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 2.23 7.87 -2.39 -0.02 2.21 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 2.57 7.34 -2.39 -0.02 2.55 16 40 H 0.09 2.51 7.40 -2.39 -0.02 2.49 16 41 H 0.11 2.16 6.85 -2.38 -0.02 2.14 16 42 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 2.64 7.49 -2.39 -0.02 2.62 16 45 H 0.02 1.47 7.28 -2.38 -0.02 1.46 16 46 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.11 4.63 3.22 -2.38 -0.01 4.63 16 48 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.93 395.41 2.73 -64.20 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.96 Total: 20.51 kcal Atomic # 6 Polarization: 55.65 SS G_CDS: 10.74 Total: 66.38 kcal Atomic # 7 Polarization: -138.75 SS G_CDS: -10.86 Total: -149.60 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.14 Total: -45.41 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -66.93 2.73 -64.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.313 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds