Wall clock time and date at job start Tue Mar 31 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38569 * 119.97060 * 2 1 4 4 N 1.33400 * 133.64265 * 0.03060 * 3 2 1 5 5 C 1.31760 * 109.96612 * 179.75793 * 4 3 2 6 6 N 1.37592 * 125.30273 * 180.23731 * 5 4 3 7 7 C 1.48004 * 111.00100 * 63.55153 * 6 5 4 8 8 C 1.50446 * 112.82754 * 191.34936 * 7 6 5 9 9 C 1.54307 * 108.50357 * 93.71993 * 8 7 6 10 10 C 1.45876 * 112.18772 * 281.46553 * 9 8 7 11 11 C 1.54310 * 112.18604 * 61.11868 * 10 9 8 12 12 C 1.47998 * 111.00291 * 294.82633 * 6 5 4 13 13 N 1.35930 * 109.39513 * 0.38637 * 5 4 3 14 14 C 1.46492 * 126.63375 * 179.88217 * 13 5 4 15 15 C 1.50703 * 109.47377 * 266.70960 * 14 13 5 16 16 H 1.07992 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99846 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99581 * 180.27424 * 17 15 14 20 20 H 1.48496 * 109.47515 * 269.72011 * 19 17 15 21 21 H 1.48507 * 109.47242 * 29.72066 * 19 17 15 22 22 H 1.48497 * 109.47207 * 149.71905 * 19 17 15 23 23 C 1.38853 * 106.73332 * 359.62294 * 13 5 4 24 24 C 1.40604 * 134.42915 * 180.22118 * 23 13 5 25 25 O 1.21877 * 120.34609 * 0.02838 * 24 23 13 26 26 N 1.34914 * 119.30411 * 180.02562 * 24 23 13 27 27 C 1.46504 * 119.49733 * 179.97438 * 26 24 23 28 28 C 1.34414 * 120.99672 * 359.97438 * 26 24 23 29 29 O 1.21607 * 119.18569 * 180.02562 * 28 26 24 30 30 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46833 * 299.97351 * 1 2 3 32 32 H 1.08997 * 109.47512 * 59.97260 * 1 2 3 33 33 H 1.09000 * 108.80778 * 312.20807 * 7 6 5 34 34 H 1.08994 * 108.81595 * 70.48108 * 7 6 5 35 35 H 1.09004 * 109.62924 * 334.01768 * 8 7 6 36 36 H 1.08996 * 109.62804 * 213.43068 * 8 7 6 37 37 H 1.09006 * 108.93700 * 160.76634 * 9 8 7 38 38 H 1.09000 * 108.93870 * 42.16299 * 9 8 7 39 39 H 1.08996 * 108.93796 * 300.42158 * 10 9 8 40 40 H 1.09000 * 108.93974 * 181.82148 * 10 9 8 41 41 H 1.08993 * 109.63163 * 161.75981 * 11 10 9 42 42 H 1.09007 * 109.62763 * 41.16747 * 11 10 9 43 43 H 1.08998 * 108.81394 * 205.70068 * 12 6 5 44 44 H 1.09002 * 108.80876 * 323.97824 * 12 6 5 45 45 H 1.09008 * 109.47356 * 146.70928 * 14 13 5 46 46 H 1.09000 * 109.47063 * 26.70678 * 14 13 5 47 47 H 0.97002 * 119.99940 * 179.97438 * 18 17 15 48 48 H 1.08997 * 109.46793 * 90.00106 * 27 26 24 49 49 H 1.09002 * 109.46599 * 209.99806 * 27 26 24 50 50 H 1.08993 * 109.47528 * 330.00208 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1572 1.2004 0.0000 4 7 1.7808 2.4802 0.0005 5 6 2.8420 3.2612 0.0055 6 7 2.8168 4.6369 0.0120 7 6 2.1903 5.1500 1.2509 8 6 1.8933 6.6235 1.1877 9 6 0.4390 6.8098 0.7067 10 6 0.3102 6.6405 -0.7364 11 6 0.7260 5.2276 -1.1968 12 6 2.2285 5.1626 -1.2401 13 7 3.9656 2.4962 -0.0003 14 6 5.3497 2.9759 0.0001 15 6 5.8489 3.0707 -1.4187 16 1 5.2001 2.8003 -2.2386 17 6 7.1343 3.5018 -1.6699 18 7 7.9245 3.8307 -0.6715 19 14 7.7505 3.6266 -3.4289 20 1 8.3760 2.3400 -3.8268 21 1 6.6102 3.9231 -4.3330 22 1 8.7549 4.7161 -3.5254 23 6 3.5476 1.1721 -0.0005 24 6 4.2089 -0.0688 -0.0011 25 8 5.4267 -0.1175 -0.0011 26 7 3.4812 -1.2048 -0.0016 27 6 4.1658 -2.5001 -0.0029 28 6 2.1376 -1.1662 -0.0011 29 8 1.5143 -2.2105 -0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.2588 4.6108 1.4230 34 1 2.8623 4.9625 2.0883 35 1 2.5754 7.1048 0.4868 36 1 2.0108 7.0635 2.1780 37 1 0.1025 7.8107 0.9770 38 1 -0.1954 6.0780 1.2068 39 1 0.9409 7.3754 -1.2366 40 1 -0.7273 6.8145 -1.0218 41 1 0.3222 5.0325 -2.1902 42 1 0.3475 4.4867 -0.4924 43 1 2.6186 6.1647 -1.4181 44 1 2.5287 4.5188 -2.0669 45 1 5.9753 2.2803 0.5596 46 1 5.3931 3.9599 0.4670 47 1 8.8289 4.1336 -0.8482 48 1 4.3360 -2.8220 1.0245 49 1 3.5485 -3.2368 -0.5170 50 1 5.1222 -2.4051 -0.5170 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:58 Heat of formation + Delta-G solvation = 33.704237 kcal Electronic energy + Delta-G solvation = -34887.641715 eV Core-core repulsion = 30531.178498 eV Total energy + Delta-G solvation = -4356.463217 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.52421 -40.85825 -39.00757 -38.60882 -36.17046 -34.94453 -34.32317 -33.75436 -32.14710 -32.03699 -30.13290 -27.71536 -27.49047 -26.48065 -26.06584 -24.91577 -23.56162 -22.98145 -22.50281 -20.96832 -20.41503 -19.15440 -18.82730 -17.93884 -17.15549 -16.90252 -16.59127 -16.39311 -15.95761 -15.58079 -15.21488 -15.04104 -14.71745 -14.61083 -14.43488 -14.24884 -13.76086 -13.56574 -13.23010 -13.03835 -13.02312 -12.73413 -12.53596 -12.30300 -12.29605 -12.21520 -12.10264 -11.80371 -11.44424 -11.25608 -11.03068 -10.89828 -10.78398 -10.67684 -10.58737 -10.51060 -10.33389 -10.21112 -10.04968 -9.72650 -9.66186 -9.48809 -8.87549 -8.60310 -8.45205 -7.59601 -6.23971 -4.29677 1.43119 2.01674 2.26867 2.77682 2.94493 3.22791 3.28733 3.29404 3.34314 3.82543 4.04737 4.30077 4.50450 4.70453 4.72705 4.87740 4.98881 5.12899 5.15676 5.25545 5.28491 5.37920 5.41616 5.43209 5.48049 5.50168 5.62547 5.67118 5.69453 5.74102 5.79487 5.83006 5.87847 5.92707 6.00228 6.06562 6.07630 6.12429 6.20206 6.28286 6.38856 6.47722 6.66645 6.93943 7.06533 7.09342 7.30133 7.48865 7.63119 7.75293 7.86076 7.90895 8.03450 8.30765 8.69620 9.34740 10.85270 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.006514 B = 0.005578 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4297.132602 B = 5018.609620 C = 8388.555829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.511 5.511 3 C 0.293 3.707 4 N -0.522 5.522 5 C 0.437 3.563 6 N -0.467 5.467 7 C 0.074 3.926 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.118 4.118 11 C -0.149 4.149 12 C 0.080 3.920 13 N -0.350 5.350 14 C 0.236 3.764 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.071 3.929 18 N -0.887 5.887 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.273 1.273 22 H -0.283 1.283 23 C -0.134 4.134 24 C 0.586 3.414 25 O -0.487 6.487 26 N -0.557 5.557 27 C 0.088 3.912 28 C 0.711 3.289 29 O -0.557 6.557 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.267 0.733 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.145 1.068 2.913 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.239 5.239 3 C 0.058 3.942 4 N -0.252 5.252 5 C 0.084 3.916 6 N -0.191 5.191 7 C -0.052 4.052 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.188 4.188 12 C -0.046 4.046 13 N -0.028 5.028 14 C 0.118 3.882 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.525 5.525 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.198 1.198 22 H -0.208 1.208 23 C -0.255 4.255 24 C 0.380 3.620 25 O -0.360 6.360 26 N -0.302 5.302 27 C -0.053 4.053 28 C 0.414 3.586 29 O -0.432 6.432 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.109 0.891 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.705 1.042 2.976 15.039 hybrid contribution 0.546 -0.308 -0.992 1.174 sum -14.159 0.734 1.983 14.316 Atomic orbital electron populations 1.21827 0.75309 1.04561 1.03088 1.43610 1.08197 1.01168 1.70956 1.17813 0.87219 0.86903 1.02226 1.69854 1.29514 0.98510 1.27285 1.20209 0.80637 0.89246 1.01476 1.58181 1.57644 0.99310 1.04015 1.21813 0.98331 0.95505 0.89588 1.21447 0.96748 0.95319 1.02324 1.20604 0.96795 1.01573 0.96705 1.20572 1.01200 0.97279 0.96490 1.21981 0.96882 0.97475 1.02448 1.21819 0.92666 1.01187 0.88975 1.46015 1.10482 1.02010 1.44281 1.20094 0.71026 0.97041 1.00043 1.21005 0.98621 1.46449 0.90479 0.92204 1.24827 0.96017 0.94524 0.97901 1.69909 1.07962 1.43626 1.30959 0.86394 0.78699 0.77958 0.83836 1.20361 1.19758 1.20824 1.18664 0.92675 0.87371 1.26764 1.15448 0.87021 0.82304 0.77228 1.90987 1.12027 1.86691 1.46271 1.45831 1.05748 1.09816 1.68809 1.21831 0.98437 0.81421 1.03638 1.15407 0.81503 0.83336 0.78362 1.90950 1.66165 1.29470 1.56626 0.88547 0.90937 0.90917 0.92886 0.90934 0.90158 0.90726 0.92284 0.92179 0.92054 0.92519 0.91435 0.89756 0.89767 0.90874 0.92264 0.91709 0.92301 0.91126 0.89145 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.62 59.84 0.64 1.77 16 2 N -0.51 -8.26 3.06 -128.30 -0.39 -8.66 16 3 C 0.29 5.41 7.68 -154.60 -1.19 4.22 16 4 N -0.52 -9.28 9.94 -12.76 -0.13 -9.40 16 5 C 0.44 8.29 5.97 -320.34 -1.91 6.38 16 6 N -0.47 -7.71 4.51 -176.05 -0.79 -8.50 16 7 C 0.07 0.99 4.93 -4.49 -0.02 0.97 16 8 C -0.12 -1.27 5.63 -27.32 -0.15 -1.43 16 9 C -0.12 -1.10 5.30 -29.42 -0.16 -1.26 16 10 C -0.12 -1.13 5.30 -29.42 -0.16 -1.29 16 11 C -0.15 -1.76 5.52 -27.32 -0.15 -1.91 16 12 C 0.08 1.16 5.11 -4.49 -0.02 1.13 16 13 N -0.35 -7.72 2.82 -116.17 -0.33 -8.05 16 14 C 0.24 5.92 5.60 -5.20 -0.03 5.90 16 15 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 18 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 19 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.13 -2.83 6.91 -83.48 -0.58 -3.40 16 24 C 0.59 12.25 7.42 -15.31 -0.11 12.14 16 25 O -0.49 -11.63 15.65 5.03 0.08 -11.55 16 26 N -0.56 -9.75 2.96 -131.80 -0.39 -10.14 16 27 C 0.09 1.22 10.09 59.85 0.60 1.82 16 28 C 0.71 12.09 8.12 -87.37 -0.71 11.38 16 29 O -0.56 -9.62 15.02 5.27 0.08 -9.54 16 30 H 0.10 1.09 6.85 -51.93 -0.36 0.74 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.71 6.25 -51.93 -0.32 0.39 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.92 7.08 -51.93 -0.37 0.55 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.57 7.52 -51.93 -0.39 0.18 16 39 H 0.06 0.58 7.52 -51.93 -0.39 0.19 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.11 6.09 -51.93 -0.32 0.80 16 43 H 0.08 1.13 6.59 -51.93 -0.34 0.79 16 44 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 45 H 0.06 1.65 7.41 -51.92 -0.38 1.26 16 46 H 0.07 1.66 8.03 -51.93 -0.42 1.24 16 47 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.11 7.34 -51.93 -0.38 0.73 16 50 H 0.09 1.30 7.40 -51.93 -0.38 0.91 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -31.48 394.29 -11.97 -43.45 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.39 Total: 0.98 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: -4.37 Total: 23.59 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.29 Total: -69.11 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.16 Total: -21.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.48 -11.97 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.159 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds