Wall clock time and date at job start Tue Mar 31 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.50692 * 109.47453 * 120.00592 * 2 1 3 5 5 N 1.30500 * 125.65025 * 299.97335 * 4 2 1 6 6 C 1.34122 * 109.25759 * 180.02562 * 5 4 2 7 7 C 1.34668 * 108.02106 * 359.97438 * 6 5 4 8 8 N 1.35046 * 125.65143 * 120.28137 * 4 2 1 9 9 C 1.46491 * 126.39658 * 0.02562 * 8 4 2 10 10 C 1.50702 * 109.47620 * 85.14333 * 9 8 4 11 11 O 1.21288 * 119.99589 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00119 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00064 * 355.25858 * 12 10 9 14 14 C 1.50702 * 109.46626 * 90.00354 * 13 12 10 15 15 H 1.07995 * 120.00429 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99716 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99816 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47363 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46643 * 120.00395 * 18 16 14 21 21 H 1.48500 * 109.46790 * 240.00015 * 18 16 14 22 22 C 1.39925 * 119.99814 * 175.26514 * 12 10 9 23 23 C 1.38907 * 120.06165 * 291.84139 * 22 12 10 24 24 C 1.38094 * 119.95449 * 179.76829 * 23 22 12 25 25 C 1.38282 * 120.08346 * 0.49114 * 24 23 22 26 26 C 1.38389 * 120.12836 * 359.78700 * 25 24 23 27 27 Cl 1.73599 * 119.97580 * 179.97438 * 26 25 24 28 28 C 1.38248 * 120.04157 * 359.95569 * 26 25 24 29 29 H 1.09004 * 109.46609 * 299.99079 * 1 2 3 30 30 H 1.08993 * 109.47576 * 59.99392 * 1 2 3 31 31 H 1.09001 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46173 * 240.00610 * 2 1 3 33 33 H 1.09005 * 109.47044 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47450 * 300.00685 * 3 2 1 35 35 H 1.09005 * 109.46915 * 60.00468 * 3 2 1 36 36 H 1.08008 * 125.99045 * 179.97438 * 6 5 4 37 37 H 1.08004 * 126.59089 * 179.97438 * 7 6 5 38 38 H 1.09009 * 109.47187 * 205.14074 * 9 8 4 39 39 H 1.08998 * 109.47315 * 325.13690 * 9 8 4 40 40 H 1.09002 * 109.46971 * 209.99878 * 13 12 10 41 41 H 1.08994 * 109.47036 * 330.00717 * 13 12 10 42 42 H 0.96996 * 119.99669 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.02224 * 0.02562 * 23 22 12 44 44 H 1.08001 * 119.96378 * 180.23573 * 24 23 22 45 45 H 1.08007 * 119.93736 * 179.76325 * 25 24 23 46 46 H 1.07997 * 120.04200 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7105 1.2303 5 7 1.7866 -0.3619 2.4636 6 6 2.3943 -1.2207 3.2955 7 6 3.0409 -2.1365 2.5495 8 7 2.8166 -1.8100 1.2393 9 6 3.3290 -2.5218 0.0659 10 6 4.6016 -1.8653 -0.4039 11 8 5.0373 -0.8977 0.1834 12 7 5.2548 -2.3528 -1.4772 13 6 4.7865 -3.5810 -2.1242 14 6 3.7928 -3.2331 -3.2025 15 1 3.5362 -2.2005 -3.3876 16 6 3.2121 -4.2331 -3.9535 17 7 3.5251 -5.4905 -3.7284 18 14 1.9799 -3.8019 -5.2895 19 1 1.8014 -2.3287 -5.3416 20 1 2.4818 -4.2860 -6.6006 21 1 0.6773 -4.4485 -4.9887 22 6 6.3805 -1.6860 -1.9734 23 6 6.2433 -0.4406 -2.5730 24 6 7.3563 0.2177 -3.0577 25 6 8.6058 -0.3659 -2.9560 26 6 8.7457 -1.6091 -2.3644 27 17 10.3161 -2.3384 -2.2394 28 6 7.6357 -2.2705 -1.8727 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8898 35 1 1.6767 1.9563 0.8901 36 1 2.3694 -1.1841 4.3747 37 1 3.6281 -2.9662 2.9147 38 1 3.5318 -3.5596 0.3305 39 1 2.5870 -2.4886 -0.7319 40 1 5.6341 -4.1046 -2.5665 41 1 4.3092 -4.2225 -1.3836 42 1 3.1163 -6.1940 -4.2564 43 1 5.2674 0.0145 -2.6564 44 1 7.2503 1.1878 -3.5205 45 1 9.4742 0.1494 -3.3393 46 1 7.7449 -3.2405 -1.4106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182813850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:29 Heat of formation + Delta-G solvation = 42.788746 kcal Electronic energy + Delta-G solvation = -30563.375145 eV Core-core repulsion = 26479.889181 eV Total energy + Delta-G solvation = -4083.485964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93487 -40.12882 -38.34388 -36.39609 -35.29296 -35.15166 -33.70964 -32.87102 -30.65354 -30.13921 -28.60988 -27.62793 -27.08835 -26.97792 -23.46112 -22.93673 -22.49412 -22.33324 -21.03604 -19.73844 -18.58041 -17.47099 -16.99293 -16.84631 -16.54429 -15.80573 -15.49941 -15.06330 -14.82542 -14.61133 -14.39286 -14.16675 -14.05563 -13.59956 -13.39806 -13.31119 -13.16604 -12.98537 -12.66942 -12.62705 -12.10606 -11.97899 -11.88520 -11.75772 -11.48698 -11.34207 -11.32205 -11.17735 -11.01960 -11.01282 -10.85533 -10.75590 -10.43811 -10.07973 -9.97539 -9.68526 -9.17706 -8.92374 -8.79385 -8.61695 -8.05697 -8.02020 -6.42104 -4.51836 1.32369 1.40253 2.16566 2.28824 2.82484 2.91106 3.08048 3.18356 3.20413 3.43825 3.56259 3.79623 4.14421 4.57254 4.85123 4.88952 4.91264 4.97134 5.01867 5.11784 5.22578 5.30452 5.34906 5.38736 5.51835 5.54094 5.63096 5.71508 5.80430 5.86448 5.88124 6.00318 6.02086 6.12090 6.25226 6.37106 6.37829 6.44028 6.47099 6.55708 6.62694 6.77308 6.87975 7.03783 7.22801 7.43403 7.50719 7.72699 7.79608 8.39391 8.42756 8.58870 9.17906 10.64813 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.006980 B = 0.004230 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4010.629948 B = 6618.107328 C = 8831.151643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 C -0.136 4.136 4 C 0.230 3.770 5 N -0.492 5.492 6 C -0.034 4.034 7 C -0.053 4.053 8 N -0.436 5.436 9 C 0.089 3.911 10 C 0.507 3.493 11 O -0.535 6.535 12 N -0.556 5.556 13 C 0.235 3.765 14 C -0.548 4.548 15 H 0.065 0.935 16 C 0.070 3.930 17 N -0.885 5.885 18 Si 0.896 3.104 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.188 3.812 23 C -0.100 4.100 24 C -0.099 4.099 25 C -0.122 4.122 26 C -0.024 4.024 27 Cl -0.078 7.078 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.268 0.732 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 6.361 3.949 7.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.194 4.194 4 C -0.033 4.033 5 N -0.211 5.211 6 C -0.181 4.181 7 C -0.186 4.186 8 N -0.118 5.118 9 C -0.036 4.036 10 C 0.294 3.706 11 O -0.411 6.411 12 N -0.285 5.285 13 C 0.117 3.883 14 C -0.586 4.586 15 H 0.083 0.917 16 C -0.134 4.134 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.096 3.904 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.051 4.051 27 Cl -0.049 7.049 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.141 0.859 39 H 0.154 0.846 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.546 7.149 4.363 8.753 hybrid contribution 0.163 -1.120 -1.115 1.588 sum 2.709 6.029 3.249 7.365 Atomic orbital electron populations 1.21770 0.93287 1.02138 1.02376 1.19547 0.96337 0.95989 0.91271 1.21729 1.01600 0.94056 1.02018 1.23070 0.96337 0.88409 0.95445 1.70129 1.24918 1.27071 0.98969 1.22126 1.02076 0.94690 0.99242 1.22599 1.08147 1.04953 0.82863 1.44986 1.37506 1.23155 1.06117 1.21773 0.96311 0.97046 0.88517 1.20586 0.85310 0.84362 0.80308 1.90735 1.67273 1.27191 1.55940 1.45908 1.25692 1.28109 1.28792 1.19704 0.96171 0.79202 0.93270 1.21411 1.25020 0.93876 1.18293 0.91707 1.24927 0.96661 0.94705 0.97122 1.69910 1.42749 0.99300 1.40308 0.86449 0.80769 0.78932 0.81512 1.19427 1.20627 1.20584 1.17326 0.86011 0.92022 0.95048 1.21351 0.99398 0.94790 0.96429 1.20914 0.91430 0.99855 0.99610 1.20953 0.98359 0.94036 1.00763 1.20607 0.85960 0.95094 1.03483 1.98348 1.26381 1.83172 1.97026 1.21058 0.90273 1.01102 1.00995 0.91572 0.91984 0.92701 0.90014 0.92294 0.92223 0.91724 0.81743 0.81378 0.85942 0.84646 0.93744 0.94008 0.92203 0.85516 0.85022 0.85176 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 37.16 0.34 -1.41 16 2 C -0.01 -0.17 3.25 -91.77 -0.30 -0.46 16 3 C -0.14 -1.90 9.18 37.16 0.34 -1.56 16 4 C 0.23 3.88 6.40 -155.42 -0.99 2.89 16 5 N -0.49 -8.58 11.25 -10.82 -0.12 -8.70 16 6 C -0.03 -0.52 11.87 -17.82 -0.21 -0.73 16 7 C -0.05 -0.80 11.58 -16.56 -0.19 -0.99 16 8 N -0.44 -7.21 2.24 -115.19 -0.26 -7.47 16 9 C 0.09 1.46 4.84 -5.20 -0.03 1.43 16 10 C 0.51 9.41 7.60 -10.99 -0.08 9.33 16 11 O -0.53 -11.20 16.19 5.55 0.09 -11.11 16 12 N -0.56 -10.52 2.50 -114.74 -0.29 -10.80 16 13 C 0.23 4.90 4.88 -5.19 -0.03 4.87 16 14 C -0.55 -12.59 9.16 -34.44 -0.32 -12.90 16 15 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 16 C 0.07 1.69 5.46 -17.81 -0.10 1.59 16 17 N -0.89 -22.37 13.29 55.43 0.74 -21.63 16 18 Si 0.90 18.90 29.54 -169.99 -5.02 13.88 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 22 C 0.19 3.42 4.74 -83.70 -0.40 3.02 16 23 C -0.10 -1.67 9.56 -39.39 -0.38 -2.05 16 24 C -0.10 -1.37 10.04 -39.62 -0.40 -1.77 16 25 C -0.12 -1.65 9.83 -39.51 -0.39 -2.04 16 26 C -0.02 -0.36 6.32 -39.52 -0.25 -0.61 16 27 Cl -0.08 -1.04 28.95 -51.86 -1.50 -2.54 16 28 C -0.11 -1.92 9.47 -39.36 -0.37 -2.29 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.24 6.84 -51.93 -0.36 0.89 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.12 1.79 7.25 -51.92 -0.38 1.41 16 39 H 0.14 2.21 7.04 -51.93 -0.37 1.85 16 40 H 0.04 1.01 7.86 -51.93 -0.41 0.60 16 41 H 0.04 0.87 6.47 -51.93 -0.34 0.53 16 42 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 46 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 407.41 15.07 6.14 6.14 Total: -1.00 -28.40 407.41 -10.43 -38.83 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.46 Total: 7.11 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.74 Total: -3.70 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.07 Total: -48.60 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -28.40 -10.43 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182813850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.619 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds