Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.51062 * 2 1 4 4 C 1.53104 * 109.50260 * 239.91298 * 2 1 3 5 5 N 1.47016 * 109.25451 * 183.21825 * 4 2 1 6 6 C 1.46897 * 110.99756 * 182.39265 * 5 4 2 7 7 C 1.52996 * 109.47261 * 169.99845 * 6 5 4 8 8 N 1.46503 * 109.47604 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99943 * 270.00162 * 8 7 6 10 10 C 1.34770 * 119.99904 * 89.99548 * 8 7 6 11 11 O 1.21587 * 120.00250 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00074 * 180.02562 * 10 8 7 13 13 C 1.39238 * 120.00422 * 175.72662 * 12 10 8 14 14 C 1.39481 * 119.83731 * 215.00448 * 13 12 10 15 15 C 1.36375 * 120.16893 * 179.76049 * 14 13 12 16 16 C 1.40861 * 119.82776 * 0.50884 * 15 14 13 17 17 C 1.41167 * 120.16299 * 179.71948 * 16 15 14 18 18 H 1.07999 * 119.99690 * 214.82144 * 17 16 15 19 19 C 1.39894 * 120.00041 * 34.82117 * 17 16 15 20 20 N 1.30888 * 119.99640 * 355.52757 * 19 17 16 21 21 Si 1.86790 * 120.00124 * 175.52662 * 19 17 16 22 22 H 1.48499 * 109.47152 * 60.00009 * 21 19 17 23 23 H 1.48504 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47215 * 300.00303 * 21 19 17 25 25 C 1.40868 * 119.67586 * 359.74720 * 16 15 14 26 26 C 1.36374 * 119.82682 * 359.97438 * 25 16 15 27 27 C 1.47005 * 110.75443 * 58.61534 * 5 4 2 28 28 C 1.53098 * 109.26153 * 301.38419 * 27 5 4 29 29 H 1.09004 * 109.50475 * 296.91171 * 28 27 5 30 30 C 1.52996 * 109.51012 * 176.78421 * 28 27 5 31 31 O 1.43013 * 109.25990 * 56.84637 * 28 27 5 32 32 H 1.08996 * 109.47282 * 180.08680 * 1 2 3 33 33 H 1.09000 * 109.46663 * 300.08732 * 1 2 3 34 34 H 1.08998 * 109.47294 * 60.08140 * 1 2 3 35 35 H 1.09001 * 109.50374 * 63.28242 * 4 2 1 36 36 H 1.08998 * 109.50602 * 303.14798 * 4 2 1 37 37 H 1.09004 * 109.47197 * 49.99794 * 6 5 4 38 38 H 1.08994 * 109.47355 * 289.99715 * 6 5 4 39 39 H 1.09004 * 109.47293 * 299.99904 * 7 6 5 40 40 H 1.09004 * 109.47056 * 59.99863 * 7 6 5 41 41 H 1.08999 * 109.46815 * 89.99667 * 9 8 7 42 42 H 1.08993 * 109.47032 * 209.99559 * 9 8 7 43 43 H 1.08996 * 109.46856 * 329.99882 * 9 8 7 44 44 H 0.97000 * 119.99905 * 355.72541 * 12 10 8 45 45 H 1.07999 * 119.91354 * 0.02562 * 14 13 12 46 46 H 1.08005 * 120.08130 * 180.25684 * 15 14 13 47 47 H 0.97001 * 119.99557 * 180.02562 * 20 19 17 48 48 H 1.08003 * 120.08570 * 179.97438 * 25 16 15 49 49 H 1.08000 * 119.91496 * 179.97438 * 26 25 16 50 50 H 1.09004 * 109.51005 * 61.32031 * 27 5 4 51 51 H 1.09005 * 109.50745 * 181.44685 * 27 5 4 52 52 H 1.08998 * 109.46833 * 300.21867 * 30 28 27 53 53 H 1.09007 * 109.47392 * 60.21366 * 30 28 27 54 54 H 1.08994 * 109.47380 * 180.21612 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5092 -0.7881 -1.2048 6 6 4.0445 -1.4261 -2.4149 7 6 5.5643 -1.2540 -2.4525 8 7 6.0981 -1.8897 -3.6597 9 6 6.5041 -3.2969 -3.6280 10 6 6.2156 -1.1799 -4.7993 11 8 5.8791 -0.0118 -4.8255 12 7 6.7063 -1.7648 -5.9100 13 6 6.7450 -1.0589 -7.1095 14 6 6.5304 -1.7269 -8.3150 15 6 6.5620 -1.0413 -9.4935 16 6 6.8226 0.3430 -9.4920 17 6 6.8628 1.0585 -10.7082 18 1 7.5532 1.8803 -10.8287 19 6 6.0084 0.7032 -11.7574 20 7 5.2342 -0.3461 -11.6441 21 14 5.9723 1.7261 -13.3199 22 1 7.3212 1.7289 -13.9410 23 1 4.9914 1.1435 -14.2705 24 1 5.5762 3.1190 -12.9906 25 6 7.0436 1.0097 -8.2709 26 6 7.0033 0.3118 -7.1000 27 6 3.9639 -1.4885 0.0051 28 6 3.4335 -0.7574 1.2412 29 1 3.8535 0.2478 1.2777 30 6 3.8358 -1.5262 2.5014 31 8 2.0076 -0.6767 1.1659 32 1 -0.3633 -1.0276 0.0016 33 1 -0.3632 0.5152 0.8892 34 1 -0.3634 0.5125 -0.8907 35 1 1.7272 -0.1787 -2.1391 36 1 1.6331 -1.7338 -1.2766 37 1 3.6042 -0.9601 -3.2965 38 1 3.7993 -2.4880 -2.4046 39 1 5.8096 -0.1919 -2.4629 40 1 6.0046 -1.7200 -1.5710 41 1 5.6544 -3.9262 -3.8928 42 1 7.3119 -3.4581 -4.3417 43 1 6.8479 -3.5534 -2.6260 44 1 7.0325 -2.6776 -5.8737 45 1 6.3346 -2.7890 -8.3148 46 1 6.3916 -1.5592 -10.4258 47 1 4.6421 -0.5927 -12.3717 48 1 7.2445 2.0709 -8.2621 49 1 7.1730 0.8214 -6.1631 50 1 3.5866 -2.5111 -0.0028 51 1 5.0536 -1.5022 0.0300 52 1 3.4169 -2.5317 2.4627 53 1 4.9227 -1.5873 2.5582 54 1 3.4546 -1.0073 3.3808 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193731528.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -55.603673 kcal Electronic energy + Delta-G solvation = -32301.941490 eV Core-core repulsion = 28045.145935 eV Total energy + Delta-G solvation = -4256.795555 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.63050 -40.83774 -39.36628 -37.60046 -36.20423 -36.16051 -34.72450 -34.62344 -31.82687 -31.43460 -30.81049 -29.96447 -27.78347 -27.65829 -26.84501 -25.45488 -23.40398 -23.05228 -22.86207 -22.23701 -21.41697 -20.72127 -19.37100 -19.13302 -18.13052 -17.62012 -17.39231 -17.04543 -16.71383 -16.61065 -16.47423 -15.81170 -15.70273 -15.50429 -15.22144 -14.83395 -14.70552 -14.48309 -14.24635 -14.13189 -13.97433 -13.85254 -13.60336 -13.52186 -13.34406 -13.23066 -13.11771 -13.02534 -12.86570 -12.82988 -12.79032 -12.74657 -12.46711 -12.41781 -11.96720 -11.83812 -11.80763 -11.43712 -11.39134 -11.22146 -10.98277 -10.65023 -10.60919 -9.76774 -9.46423 -9.44022 -8.67491 -8.48574 -6.30857 0.85724 1.15712 1.39779 1.48943 1.52021 1.61085 2.17950 2.25609 2.62876 2.74501 2.82636 3.11718 3.66805 3.69644 3.80812 3.85384 3.97861 4.07677 4.15139 4.20022 4.22704 4.33411 4.39444 4.42468 4.47448 4.54023 4.59087 4.60825 4.63669 4.65375 4.75017 4.75374 4.85069 4.91464 4.95402 4.95978 5.01009 5.11633 5.14778 5.16189 5.20187 5.29648 5.32386 5.45124 5.53660 5.67467 5.77452 5.83904 5.93096 6.04938 6.09314 6.20110 6.24648 6.41400 6.69696 6.98140 7.01103 7.03049 7.62302 8.44061 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.001779 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.734586 B =15734.267773 C =16808.360097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.090 3.910 3 H 0.061 0.939 4 C 0.027 3.973 5 N -0.546 5.546 6 C 0.053 3.947 7 C 0.144 3.856 8 N -0.627 5.627 9 C 0.072 3.928 10 C 0.691 3.309 11 O -0.619 6.619 12 N -0.659 5.659 13 C 0.041 3.959 14 C -0.120 4.120 15 C -0.156 4.156 16 C 0.065 3.935 17 C -0.499 4.499 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.843 5.843 21 Si 0.988 3.012 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.266 1.266 25 C -0.219 4.219 26 C -0.098 4.098 27 C 0.023 3.977 28 C 0.083 3.917 29 H 0.061 0.939 30 C -0.138 4.138 31 O -0.395 6.395 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.412 0.588 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.284 0.716 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.044 0.956 51 H 0.104 0.896 52 H 0.061 0.939 53 H 0.092 0.908 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -9.422 24.541 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.102 4.102 5 N -0.271 5.271 6 C -0.076 4.076 7 C 0.020 3.980 8 N -0.365 5.365 9 C -0.070 4.070 10 C 0.393 3.607 11 O -0.499 6.499 12 N -0.308 5.308 13 C -0.053 4.053 14 C -0.141 4.141 15 C -0.176 4.176 16 C 0.062 3.938 17 C -0.529 4.529 18 H 0.090 0.910 19 C -0.185 4.185 20 N -0.471 5.471 21 Si 0.809 3.191 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.239 4.239 26 C -0.118 4.118 27 C -0.105 4.105 28 C 0.026 3.974 29 H 0.079 0.921 30 C -0.196 4.196 31 O -0.315 6.315 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.251 0.749 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.095 0.905 48 H 0.113 0.887 49 H 0.124 0.876 50 H 0.062 0.938 51 H 0.122 0.878 52 H 0.080 0.920 53 H 0.111 0.889 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.894 -8.377 24.599 26.277 hybrid contribution -0.279 -0.446 -1.249 1.355 sum -4.173 -8.823 23.350 25.308 Atomic orbital electron populations 1.21740 0.91395 1.03140 1.03491 1.22177 0.95872 0.95110 0.83598 0.92140 1.22807 0.87430 1.00155 0.99762 1.62082 1.09251 1.53375 1.02396 1.22313 0.96263 0.97065 0.91936 1.21257 0.92020 0.99078 0.85622 1.47018 1.67444 1.12968 1.09063 1.22049 1.00648 0.79063 1.05252 1.16186 0.78555 0.84715 0.81241 1.90892 1.57607 1.17186 1.84247 1.42059 1.64789 1.17544 1.06421 1.17112 1.11960 0.91789 0.84485 1.20516 1.02824 0.99413 0.91331 1.21153 1.05095 0.94144 0.97250 1.18031 0.90443 0.92517 0.92781 1.19680 1.19920 1.15316 0.98028 0.90985 1.26730 0.93349 0.95871 1.02520 1.69828 1.19848 1.23659 1.33728 0.85163 0.79264 0.78514 0.76162 1.18187 1.19237 1.19109 1.20921 1.12016 0.98339 0.92602 1.20518 1.00352 0.93896 0.97037 1.22967 1.02149 0.95941 0.89413 1.22313 0.80578 0.99319 0.95226 0.92062 1.21739 1.02668 1.00123 0.95027 1.87963 1.21967 1.78481 1.43060 0.91913 0.91062 0.89851 0.90243 0.94069 0.93389 0.93603 0.91730 0.87159 0.91757 0.90591 0.87745 0.74905 0.85804 0.86240 0.90536 0.88738 0.87623 0.93773 0.87806 0.91950 0.88899 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.57 71.98 0.69 -1.32 16 2 C 0.09 1.66 3.43 30.63 0.10 1.77 16 3 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.03 0.54 4.93 86.32 0.43 0.96 16 5 N -0.55 -11.22 4.73 -895.22 -4.23 -15.45 16 6 C 0.05 1.19 5.28 86.30 0.46 1.65 16 7 C 0.14 3.11 5.39 86.38 0.47 3.57 16 8 N -0.63 -15.04 2.87 -864.93 -2.49 -17.53 16 9 C 0.07 0.98 10.28 127.77 1.31 2.29 16 10 C 0.69 24.48 8.11 179.06 1.45 25.94 16 11 O -0.62 -28.20 13.34 -3.99 -0.05 -28.25 16 12 N -0.66 -22.75 5.18 -316.78 -1.64 -24.40 16 13 C 0.04 1.82 6.31 38.57 0.24 2.07 16 14 C -0.12 -5.48 9.90 22.13 0.22 -5.26 16 15 C -0.16 -8.28 8.62 22.48 0.19 -8.09 16 16 C 0.06 3.65 5.55 -21.27 -0.12 3.53 16 17 C -0.50 -27.93 9.02 23.39 0.21 -27.72 16 18 H 0.07 3.90 7.85 -2.91 -0.02 3.87 16 19 C 0.03 1.40 5.42 85.23 0.46 1.86 16 20 N -0.84 -45.15 10.60 21.82 0.23 -44.92 16 21 Si 0.99 39.84 29.56 68.60 2.03 41.86 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 C -0.22 -11.75 9.74 22.48 0.22 -11.53 16 26 C -0.10 -4.90 8.61 22.14 0.19 -4.70 16 27 C 0.02 0.35 4.72 86.32 0.41 0.76 16 28 C 0.08 1.30 3.43 30.63 0.10 1.41 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 C -0.14 -1.45 9.57 71.98 0.69 -0.76 16 31 O -0.39 -7.74 10.11 -148.98 -1.51 -9.24 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 1.42 8.04 -2.38 -0.02 1.40 16 38 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 39 H 0.06 1.82 7.42 -2.38 -0.02 1.80 16 40 H 0.11 1.52 6.27 -2.38 -0.01 1.51 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.94 6.30 -2.39 -0.02 0.93 16 43 H 0.10 0.79 7.89 -2.39 -0.02 0.77 16 44 H 0.41 10.61 6.51 -92.71 -0.60 10.01 16 45 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 46 H 0.12 6.57 6.13 -2.91 -0.02 6.55 16 47 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 48 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 49 H 0.11 5.33 6.22 -2.91 -0.02 5.31 16 50 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.10 1.20 6.38 -2.38 -0.02 1.19 16 52 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 54 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.90 424.77 0.36 -72.54 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: 0.29 Total: 38.98 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 7.73 Total: -13.59 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -8.13 Total: -102.30 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.56 Total: -37.50 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Total: -72.90 0.36 -72.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193731528.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.935 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds