Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33408 * 121.24736 * 2 1 4 4 C 1.50545 * 119.55402 * 180.41668 * 3 2 1 5 5 C 1.53000 * 109.18418 * 84.80195 * 4 3 2 6 6 C 1.53001 * 109.18374 * 204.04967 * 4 3 2 7 7 N 1.46441 * 110.93632 * 324.42221 * 4 3 2 8 8 C 1.46899 * 111.00244 * 287.97682 * 7 4 3 9 9 C 1.38064 * 112.35148 * 52.92992 * 7 4 3 10 10 C 1.39284 * 120.69347 * 143.45656 * 9 7 4 11 11 C 1.36553 * 120.25339 * 179.31448 * 10 9 7 12 12 Cl 1.73603 * 119.74125 * 180.24643 * 11 10 9 13 13 C 1.40871 * 120.50920 * 0.52582 * 11 10 9 14 14 C 1.46471 * 120.06106 * 179.89735 * 13 11 10 15 15 N 1.30878 * 120.00240 * 0.02562 * 14 13 11 16 16 N 1.40101 * 120.00176 * 179.72836 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.22043 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.40187 * 119.99578 * 179.97438 * 17 16 15 20 20 H 1.08001 * 120.00455 * 0.02562 * 19 17 16 21 21 C 1.40122 * 120.00025 * 179.97438 * 19 17 16 22 22 N 1.30654 * 119.99687 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00442 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47514 * 89.99280 * 23 21 19 25 25 H 1.48499 * 109.47117 * 210.00029 * 23 21 19 26 26 H 1.48501 * 109.46893 * 329.99642 * 23 21 19 27 27 C 1.40223 * 119.87023 * 359.62238 * 13 11 10 28 28 C 1.38350 * 119.35443 * 0.20332 * 27 13 11 29 29 H 1.09001 * 109.47224 * 270.02689 * 1 2 3 30 30 H 1.08995 * 109.46629 * 30.02837 * 1 2 3 31 31 H 1.08999 * 109.46829 * 150.02841 * 1 2 3 32 32 H 1.08004 * 120.22300 * 0.43049 * 3 2 1 33 33 H 1.08995 * 109.47044 * 60.00351 * 5 4 3 34 34 H 1.09000 * 109.46546 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47031 * 299.99597 * 5 4 3 36 36 H 1.09004 * 109.47201 * 59.99966 * 6 4 3 37 37 H 1.09000 * 109.46772 * 179.97438 * 6 4 3 38 38 H 1.08997 * 109.46972 * 299.99890 * 6 4 3 39 39 H 1.08995 * 109.47170 * 59.99513 * 8 7 4 40 40 H 1.08997 * 109.47065 * 180.02562 * 8 7 4 41 41 H 1.09000 * 109.46741 * 299.99976 * 8 7 4 42 42 H 1.08001 * 119.87000 * 359.59064 * 10 9 7 43 43 H 1.08002 * 119.99503 * 179.72223 * 14 13 11 44 44 H 0.97001 * 119.99642 * 359.97438 * 16 15 14 45 45 H 0.97004 * 119.99556 * 180.02562 * 22 21 19 46 46 H 1.07994 * 120.32376 * 180.21771 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1406 0.0000 4 6 3.7038 1.0961 -0.0095 5 6 4.1935 0.9558 -1.4522 6 6 4.2490 2.3980 0.5809 7 7 4.1989 -0.0343 0.7789 8 6 4.0077 0.2023 2.2161 9 6 3.6296 -1.2319 0.3946 10 6 4.3771 -2.4072 0.3954 11 6 3.8011 -3.5892 0.0269 12 17 4.7435 -5.0471 0.0389 13 6 2.4497 -3.6336 -0.3684 14 6 1.8424 -4.9065 -0.7639 15 7 2.5552 -6.0040 -0.7497 16 7 1.9727 -7.2225 -1.1225 17 6 2.7070 -8.3526 -1.1083 18 8 3.8793 -8.3145 -0.7712 19 6 2.1239 -9.5719 -1.4808 20 1 1.0866 -9.6055 -1.7796 21 6 2.8873 -10.7468 -1.4667 22 7 4.1426 -10.7058 -1.1067 23 14 2.1108 -12.3713 -1.9637 24 1 2.2797 -12.5743 -3.4250 25 1 2.7714 -13.4807 -1.2302 26 1 0.6637 -12.3505 -1.6310 27 6 1.6856 -2.4579 -0.3771 28 6 2.2738 -1.2640 0.0006 29 1 -0.3634 0.0005 1.0277 30 1 -0.3632 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6832 2.0894 0.0070 33 1 3.8490 1.8084 -2.0374 34 1 5.2830 0.9227 -1.4644 35 1 3.7976 0.0359 -1.8825 36 1 3.8927 2.5098 1.6050 37 1 5.3387 2.3706 0.5767 38 1 3.9041 3.2410 -0.0179 39 1 2.9462 0.3354 2.4243 40 1 4.3844 -0.6522 2.7782 41 1 4.5513 1.0996 2.5120 42 1 5.4151 -2.3842 0.6928 43 1 0.8051 -4.9400 -1.0625 44 1 1.0411 -7.2526 -1.3908 45 1 4.6712 -11.5192 -1.0973 46 1 0.6480 -2.4841 -0.6755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000208466269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = 59.572888 kcal Electronic energy + Delta-G solvation = -29422.677379 eV Core-core repulsion = 25339.919230 eV Total energy + Delta-G solvation = -4082.758149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18989 -38.15996 -37.42724 -35.75691 -35.10648 -34.90795 -32.98431 -32.49638 -31.16135 -30.09109 -29.28032 -27.58200 -27.31558 -26.37024 -25.40491 -23.25431 -22.66109 -21.04101 -20.54930 -19.81992 -18.12599 -17.59996 -16.87960 -16.63812 -15.86849 -15.57919 -15.28895 -14.88616 -14.61340 -14.32701 -14.05685 -13.94736 -13.56894 -13.41545 -13.39064 -13.29682 -12.84796 -12.82199 -12.64245 -12.48595 -12.46744 -12.26428 -11.87751 -11.71216 -11.47028 -11.39746 -11.34266 -11.29022 -11.05177 -10.96264 -10.83375 -10.72023 -10.61610 -10.36428 -9.51730 -9.24792 -8.95330 -8.86165 -8.48498 -8.06432 -7.71861 -7.16310 -6.38551 -4.94462 0.69368 1.08617 2.10957 2.70471 2.85134 3.05733 3.10969 3.14827 3.58134 3.72946 3.87949 4.08967 4.42121 4.45960 4.47523 4.57466 4.72610 4.82015 4.94851 5.06390 5.18318 5.24683 5.29182 5.32916 5.36645 5.42825 5.44693 5.51924 5.58362 5.63064 5.65756 5.71854 5.79823 5.79991 5.84436 5.87233 5.94992 6.05882 6.16273 6.33577 6.40758 6.52104 6.53968 6.74478 6.86848 7.21098 7.26096 7.86600 7.99130 8.67796 8.77257 9.31810 10.39704 10.67672 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002179 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.098810 B =12848.490742 C =13609.238218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 C -0.186 4.186 4 C 0.142 3.858 5 C -0.134 4.134 6 C -0.140 4.140 7 N -0.488 5.488 8 C 0.025 3.975 9 C 0.112 3.888 10 C -0.101 4.101 11 C -0.018 4.018 12 Cl 0.000 7.000 13 C -0.014 4.014 14 C -0.009 4.009 15 N -0.151 5.151 16 N -0.588 5.588 17 C 0.557 3.443 18 O -0.547 6.547 19 C -0.536 4.536 20 H 0.069 0.931 21 C 0.088 3.912 22 N -0.742 5.742 23 Si 0.916 3.084 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.075 4.075 28 C -0.093 4.093 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.137 0.863 43 H 0.109 0.891 44 H 0.366 0.634 45 H 0.274 0.726 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 25.238 3.012 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.206 4.206 4 C 0.053 3.947 5 C -0.192 4.192 6 C -0.197 4.197 7 N -0.205 5.205 8 C -0.121 4.121 9 C 0.015 3.985 10 C -0.121 4.121 11 C -0.048 4.048 12 Cl 0.030 6.970 13 C -0.017 4.017 14 C -0.216 4.216 15 N 0.037 4.963 16 N -0.334 5.334 17 C 0.366 3.634 18 O -0.426 6.426 19 C -0.572 4.572 20 H 0.088 0.912 21 C -0.136 4.136 22 N -0.370 5.370 23 Si 0.740 3.260 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.096 4.096 28 C -0.096 4.096 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.155 0.845 43 H 0.127 0.873 44 H 0.201 0.799 45 H 0.085 0.915 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.760 24.385 3.372 24.771 hybrid contribution -2.631 -0.650 -0.507 2.757 sum -5.391 23.735 2.865 24.508 Atomic orbital electron populations 1.20728 0.90868 1.02882 1.02379 1.20564 0.95228 0.91747 0.99706 1.23881 0.95952 0.97612 1.03136 1.19917 0.89861 0.90362 0.94521 1.21821 1.01760 1.02099 0.93513 1.21969 1.01915 0.94985 1.00862 1.58736 1.56727 1.00314 1.04762 1.22488 1.00328 1.02861 0.86376 1.18592 0.89803 0.90305 0.99819 1.20395 1.00287 0.89527 1.01890 1.21145 0.92553 0.90065 1.01021 1.98527 1.70685 1.31901 1.95881 1.18426 0.91463 0.92016 0.99820 1.23828 0.97564 0.91263 1.08963 1.75698 1.25149 0.92535 1.02873 1.48349 1.13060 1.03933 1.68021 1.16637 0.86348 0.80627 0.79828 1.90746 1.16107 1.84435 1.51333 1.19635 0.98785 0.91446 1.47367 0.91233 1.25745 0.94324 1.00525 0.92958 1.70041 1.06785 1.29096 1.31057 0.86232 0.80050 0.80520 0.79225 1.19450 1.20160 1.18685 1.21007 0.99339 0.89885 0.99395 1.19182 0.93036 0.93315 1.04082 0.91156 0.91480 0.91115 0.86266 0.92023 0.91532 0.92293 0.92125 0.91363 0.91748 0.94717 0.90950 0.90342 0.84479 0.87349 0.79853 0.91526 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.93 36.01 0.36 -0.49 16 2 C -0.07 -0.71 5.78 -102.39 -0.59 -1.30 16 3 C -0.19 -1.65 7.64 -36.07 -0.28 -1.93 16 4 C 0.14 1.29 0.63 -133.08 -0.08 1.21 16 5 C -0.13 -1.27 8.36 37.16 0.31 -0.96 16 6 C -0.14 -0.95 7.68 37.16 0.29 -0.66 16 7 N -0.49 -5.23 4.45 -165.38 -0.74 -5.97 16 8 C 0.02 0.23 8.60 60.06 0.52 0.74 16 9 C 0.11 1.43 3.95 -83.54 -0.33 1.10 16 10 C -0.10 -1.45 9.67 -39.80 -0.38 -1.83 16 11 C -0.02 -0.30 6.33 -39.19 -0.25 -0.54 16 12 Cl 0.00 0.01 25.65 -51.86 -1.33 -1.32 16 13 C -0.01 -0.22 5.89 -104.84 -0.62 -0.84 16 14 C -0.01 -0.16 10.74 -14.64 -0.16 -0.32 16 15 N -0.15 -3.37 7.59 32.10 0.24 -3.13 16 16 N -0.59 -14.00 6.26 28.82 0.18 -13.82 16 17 C 0.56 16.05 7.64 -15.53 -0.12 15.93 16 18 O -0.55 -17.90 15.18 4.88 0.07 -17.83 16 19 C -0.54 -14.77 9.23 -38.14 -0.35 -15.12 16 20 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 21 C 0.09 2.39 5.50 -17.35 -0.10 2.29 16 22 N -0.74 -21.71 11.70 55.55 0.65 -21.06 16 23 Si 0.92 19.42 29.56 -169.99 -5.02 14.39 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 27 C -0.07 -0.95 9.26 -38.79 -0.36 -1.31 16 28 C -0.09 -1.14 5.34 -104.80 -0.56 -1.70 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.07 0.51 6.39 -51.93 -0.33 0.18 16 32 H 0.12 0.85 8.05 -52.48 -0.42 0.43 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.68 7.18 -51.93 -0.37 0.30 16 36 H 0.06 0.38 6.37 -51.93 -0.33 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.03 0.33 7.42 -51.93 -0.39 -0.06 16 40 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.08 0.57 6.19 -51.93 -0.32 0.25 16 42 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 44 H 0.37 7.34 8.61 -182.60 -1.57 5.77 16 45 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 46 H 0.13 1.36 6.47 -52.49 -0.34 1.02 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -34.63 389.71 -10.20 -44.83 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.42 Total: 3.76 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -2.70 Total: -5.73 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.34 Total: -43.97 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.07 Total: -17.83 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.33 Total: -1.32 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.63 -10.20 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000208466269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.399 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds