Wall clock time and date at job start Tue Mar 31 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33408 * 121.24736 * 2 1 4 4 C 1.50545 * 119.55402 * 180.41668 * 3 2 1 5 5 C 1.53000 * 109.18418 * 84.80195 * 4 3 2 6 6 C 1.53001 * 109.18374 * 204.04967 * 4 3 2 7 7 N 1.46441 * 110.93632 * 324.42221 * 4 3 2 8 8 C 1.46899 * 111.00244 * 287.97682 * 7 4 3 9 9 C 1.38064 * 112.35148 * 52.92992 * 7 4 3 10 10 C 1.39284 * 120.69347 * 143.45656 * 9 7 4 11 11 C 1.36553 * 120.25339 * 179.31448 * 10 9 7 12 12 Cl 1.73603 * 119.74125 * 180.24643 * 11 10 9 13 13 C 1.40871 * 120.50920 * 0.52582 * 11 10 9 14 14 C 1.46471 * 120.06106 * 179.89735 * 13 11 10 15 15 N 1.30878 * 120.00240 * 0.02562 * 14 13 11 16 16 N 1.40101 * 120.00176 * 179.72836 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.22043 * 119.99976 * 359.97438 * 17 16 15 19 19 C 1.40187 * 119.99578 * 179.97438 * 17 16 15 20 20 H 1.08001 * 120.00455 * 0.02562 * 19 17 16 21 21 C 1.40122 * 120.00025 * 179.97438 * 19 17 16 22 22 N 1.30654 * 119.99687 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00442 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47514 * 89.99280 * 23 21 19 25 25 H 1.48499 * 109.47117 * 210.00029 * 23 21 19 26 26 H 1.48501 * 109.46893 * 329.99642 * 23 21 19 27 27 C 1.40223 * 119.87023 * 359.62238 * 13 11 10 28 28 C 1.38350 * 119.35443 * 0.20332 * 27 13 11 29 29 H 1.09001 * 109.47224 * 270.02689 * 1 2 3 30 30 H 1.08995 * 109.46629 * 30.02837 * 1 2 3 31 31 H 1.08999 * 109.46829 * 150.02841 * 1 2 3 32 32 H 1.08004 * 120.22300 * 0.43049 * 3 2 1 33 33 H 1.08995 * 109.47044 * 60.00351 * 5 4 3 34 34 H 1.09000 * 109.46546 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47031 * 299.99597 * 5 4 3 36 36 H 1.09004 * 109.47201 * 59.99966 * 6 4 3 37 37 H 1.09000 * 109.46772 * 179.97438 * 6 4 3 38 38 H 1.08997 * 109.46972 * 299.99890 * 6 4 3 39 39 H 1.08995 * 109.47170 * 59.99513 * 8 7 4 40 40 H 1.08997 * 109.47065 * 180.02562 * 8 7 4 41 41 H 1.09000 * 109.46741 * 299.99976 * 8 7 4 42 42 H 1.08001 * 119.87000 * 359.59064 * 10 9 7 43 43 H 1.08002 * 119.99503 * 179.72223 * 14 13 11 44 44 H 0.97001 * 119.99642 * 359.97438 * 16 15 14 45 45 H 0.97004 * 119.99556 * 180.02562 * 22 21 19 46 46 H 1.07994 * 120.32376 * 180.21771 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1406 0.0000 4 6 3.7038 1.0961 -0.0095 5 6 4.1935 0.9558 -1.4522 6 6 4.2490 2.3980 0.5809 7 7 4.1989 -0.0343 0.7789 8 6 4.0077 0.2023 2.2161 9 6 3.6296 -1.2319 0.3946 10 6 4.3771 -2.4072 0.3954 11 6 3.8011 -3.5892 0.0269 12 17 4.7435 -5.0471 0.0389 13 6 2.4497 -3.6336 -0.3684 14 6 1.8424 -4.9065 -0.7639 15 7 2.5552 -6.0040 -0.7497 16 7 1.9727 -7.2225 -1.1225 17 6 2.7070 -8.3526 -1.1083 18 8 3.8793 -8.3145 -0.7712 19 6 2.1239 -9.5719 -1.4808 20 1 1.0866 -9.6055 -1.7796 21 6 2.8873 -10.7468 -1.4667 22 7 4.1426 -10.7058 -1.1067 23 14 2.1108 -12.3713 -1.9637 24 1 2.2797 -12.5743 -3.4250 25 1 2.7714 -13.4807 -1.2302 26 1 0.6637 -12.3505 -1.6310 27 6 1.6856 -2.4579 -0.3771 28 6 2.2738 -1.2640 0.0006 29 1 -0.3634 0.0005 1.0277 30 1 -0.3632 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6832 2.0894 0.0070 33 1 3.8490 1.8084 -2.0374 34 1 5.2830 0.9227 -1.4644 35 1 3.7976 0.0359 -1.8825 36 1 3.8927 2.5098 1.6050 37 1 5.3387 2.3706 0.5767 38 1 3.9041 3.2410 -0.0179 39 1 2.9462 0.3354 2.4243 40 1 4.3844 -0.6522 2.7782 41 1 4.5513 1.0996 2.5120 42 1 5.4151 -2.3842 0.6928 43 1 0.8051 -4.9400 -1.0625 44 1 1.0411 -7.2526 -1.3908 45 1 4.6712 -11.5192 -1.0973 46 1 0.6480 -2.4841 -0.6755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000208466269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:19 Heat of formation + Delta-G solvation = 37.110753 kcal Electronic energy + Delta-G solvation = -29423.651410 eV Core-core repulsion = 25339.919230 eV Total energy + Delta-G solvation = -4083.732180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09687 -39.63307 -39.02569 -37.09284 -36.76910 -35.74236 -34.70886 -33.90669 -32.52345 -31.29361 -30.33840 -28.89805 -27.98878 -27.82222 -26.27833 -24.42808 -23.80464 -22.38582 -21.75031 -21.19554 -19.63760 -18.82787 -18.02636 -18.01170 -17.53479 -16.85217 -16.31624 -16.14333 -15.69249 -15.55888 -15.27261 -15.13592 -14.83928 -14.64894 -14.41346 -14.26854 -14.07721 -14.04486 -13.70576 -13.30267 -13.22620 -13.12934 -13.03610 -12.86317 -12.74165 -12.66633 -12.59773 -12.58103 -12.40178 -12.22649 -12.12140 -12.02965 -11.93122 -11.71153 -10.99635 -10.54434 -10.35667 -10.34970 -9.88870 -9.55617 -9.19296 -8.63813 -8.40027 -7.06946 -0.42489 0.00161 1.11460 1.37420 1.38585 1.40010 1.56448 1.62973 2.08288 2.36399 2.43951 2.67095 2.80657 3.56869 3.63249 3.71023 3.73950 3.78660 3.86924 4.13991 4.21603 4.25829 4.43174 4.49526 4.52207 4.59102 4.62569 4.76930 4.80216 4.83840 4.85293 4.88370 4.90762 4.94793 4.99788 5.11114 5.16529 5.17749 5.19244 5.28231 5.32323 5.35285 5.50310 5.61373 5.74843 5.84860 6.05548 6.07405 6.30605 6.70058 6.98275 7.49223 8.43632 8.64755 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002179 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.098810 B =12848.490742 C =13609.238218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.090 4.090 3 C -0.170 4.170 4 C 0.133 3.867 5 C -0.133 4.133 6 C -0.135 4.135 7 N -0.498 5.498 8 C 0.026 3.974 9 C 0.126 3.874 10 C -0.112 4.112 11 C -0.029 4.029 12 Cl -0.045 7.045 13 C -0.049 4.049 14 C 0.036 3.964 15 N -0.218 5.218 16 N -0.597 5.597 17 C 0.545 3.455 18 O -0.604 6.604 19 C -0.562 4.562 20 H 0.092 0.908 21 C 0.030 3.970 22 N -0.799 5.799 23 Si 1.007 2.993 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.246 1.246 27 C -0.054 4.054 28 C -0.094 4.094 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.380 0.620 45 H 0.280 0.720 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 28.544 2.771 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.045 3.955 5 C -0.191 4.191 6 C -0.193 4.193 7 N -0.216 5.216 8 C -0.119 4.119 9 C 0.028 3.972 10 C -0.132 4.132 11 C -0.059 4.059 12 Cl -0.015 7.015 13 C -0.052 4.052 14 C -0.173 4.173 15 N -0.026 5.026 16 N -0.342 5.342 17 C 0.354 3.646 18 O -0.488 6.488 19 C -0.598 4.598 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.427 5.427 23 Si 0.825 3.175 24 H -0.184 1.184 25 H -0.196 1.196 26 H -0.169 1.169 27 C -0.075 4.075 28 C -0.097 4.097 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.165 0.835 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.218 0.782 45 H 0.090 0.910 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.886 27.753 3.131 28.542 hybrid contribution -1.685 -1.099 -0.375 2.046 sum -7.571 26.654 2.757 27.845 Atomic orbital electron populations 1.20768 0.88891 1.03915 1.03061 1.20729 0.96521 0.90534 1.01284 1.24149 0.95567 0.98470 1.00722 1.20142 0.90554 0.90709 0.94107 1.21829 1.01462 1.01689 0.94110 1.21957 1.01792 0.93938 1.01574 1.58750 1.56879 1.00097 1.05904 1.22536 1.00748 1.03585 0.85032 1.18756 0.90017 0.90492 0.97959 1.20427 1.00639 0.89625 1.02491 1.21275 0.92916 0.89027 1.02716 1.98516 1.71980 1.34738 1.96297 1.18562 0.91580 0.92479 1.02561 1.24514 0.98775 0.90605 1.03405 1.75836 1.26485 0.92871 1.07419 1.47591 1.13260 1.04027 1.69325 1.16992 0.86007 0.82315 0.79278 1.90688 1.18388 1.85865 1.53859 1.20179 1.00032 0.91875 1.47693 0.88953 1.27095 0.94558 1.05180 0.91974 1.70215 1.09076 1.30764 1.32694 0.84886 0.79491 0.74076 0.79036 1.18360 1.19557 1.16858 1.21311 1.00353 0.88631 0.97227 1.19543 0.92942 0.94514 1.02675 0.90598 0.89756 0.90867 0.83537 0.89988 0.92016 0.94766 0.91185 0.91589 0.89880 0.94510 0.91868 0.88048 0.84501 0.83747 0.78204 0.91018 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.93 71.24 0.71 -0.47 16 2 C -0.09 -1.43 5.78 -18.42 -0.11 -1.54 16 3 C -0.17 -2.27 7.64 24.54 0.19 -2.08 16 4 C 0.13 1.99 0.63 2.82 0.00 1.99 16 5 C -0.13 -2.21 8.36 71.98 0.60 -1.61 16 6 C -0.14 -1.29 7.68 71.98 0.55 -0.74 16 7 N -0.50 -9.70 4.45 -677.13 -3.01 -12.72 16 8 C 0.03 0.41 8.60 127.69 1.10 1.51 16 9 C 0.13 3.06 3.95 39.15 0.15 3.21 16 10 C -0.11 -3.29 9.67 22.13 0.21 -3.07 16 11 C -0.03 -1.03 6.33 22.52 0.14 -0.89 16 12 Cl -0.04 -1.98 25.65 -2.72 -0.07 -2.05 16 13 C -0.05 -1.53 5.89 -20.01 -0.12 -1.65 16 14 C 0.04 1.25 10.74 86.98 0.93 2.19 16 15 N -0.22 -10.16 7.59 -52.37 -0.40 -10.56 16 16 N -0.60 -29.65 6.26 -180.79 -1.13 -30.78 16 17 C 0.54 33.13 7.64 84.71 0.65 33.78 16 18 O -0.60 -42.29 15.18 -5.46 -0.08 -42.38 16 19 C -0.56 -31.93 9.23 23.20 0.21 -31.71 16 20 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 21 C 0.03 1.69 5.50 85.33 0.47 2.16 16 22 N -0.80 -49.05 11.70 21.85 0.26 -48.80 16 23 Si 1.01 40.21 29.56 68.60 2.03 42.23 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 26 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 27 C -0.05 -1.26 9.26 22.78 0.21 -1.05 16 28 C -0.09 -2.07 5.34 -19.98 -0.11 -2.18 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.07 0.74 6.39 -2.39 -0.02 0.73 16 32 H 0.15 1.24 8.05 -2.91 -0.02 1.22 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.03 0.73 7.18 -2.39 -0.02 0.71 16 36 H 0.07 0.56 6.37 -2.38 -0.02 0.55 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.04 0.58 7.42 -2.39 -0.02 0.56 16 40 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 41 H 0.10 1.16 6.19 -2.39 -0.01 1.14 16 42 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 43 H 0.15 3.86 8.04 -2.91 -0.02 3.84 16 44 H 0.38 15.63 8.61 -213.32 -1.84 13.79 16 45 H 0.28 15.40 8.29 -92.71 -0.77 14.63 16 46 H 0.17 2.72 6.47 -2.91 -0.02 2.70 16 Total: -1.00 -82.95 389.71 2.58 -80.37 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.81 Total: 26.83 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.80 Total: -2.15 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -4.29 Total: -102.86 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.08 Total: -42.38 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.07 Total: -2.05 kcal Total: -82.95 2.58 -80.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000208466269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.480 kcal (2) G-P(sol) polarization free energy of solvation -82.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds